Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,665,6980TC52.4% 72.6 / 199.7 145D38G (GAT→GGT) gadXacid resistance regulon transcriptional activator; autoactivator
Reads supporting (aligned to +/- strand):  ref base T (47/22);  new base C (0/76);  total (47/98)
Fisher's exact test for biased strand distribution p-value = 1.78e-21
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 2.44e-16

Only 100 of 151 total aligned reads displayed.

CTACAGTGATGAACGAGTAATGAAGAAACTTTTTTATGTGCATGAAGATTTAATGCCTCCTCCTTGAGCATCGGGAGAAATAATGAAAGCGTGTCCCTTGACACGAATACAAAATTTTCAACACACTTATCTACTCGAATTTGGCTTGCATCCGCAAAAACCAGGTCACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATACGCAATTAGACAATTCCCATGTAGTGATTGCATAGTTGACTTAATATTACATAAACATATTACTG  >  NC_000913/3665548‑3665842
                                                                                                                                                       |                                                                                                                                                  
ctacAGTGATGAACGAGTAATGAAGAAACTTTTTTATGTGCATGAAGATTTAATGCCTCCTCCTTGAGCATCGGGAGAAATAATGAAAGCGTGTCCCTTGACACGAATACAAAATTTTCAACACACTTATCTACTCGAATTTGGCTTGCAt                                                                                                                                                    >  1:783593/1‑151 (MQ=255)
ctacAGTGATGAACGAGTAATGAAGAAACTTTTTTATGTGCATGAAGATTTAATGCCTCCTCCTTGAGCATCGGGAGAAATAATGAAAGCGTGTCCCTTGACACGAATACAAAATTTTCAACACACTTATCTACTCGAATTTGGCTTGCAt                                                                                                                                                    >  1:370786/1‑151 (MQ=255)
ctacAGTGATGAACGAGTAATGAAGAAACTTTTTTATGTGCATGAAGATTTAATGCCTCCTCCTTGAGCATCGGGAGAAATAATGAAAGCGTGTCCCTTGACACGAATACAAAATTTTCAACACACTTATCTACTCGAATTTGGCTTGCAt                                                                                                                                                    >  2:1666513/1‑151 (MQ=255)
ctacAGTGATGAACGAGTAATGAAGAAACTTTTTTATGTGCATGAAGATTTAATGCCTCCTCCTTGAGCATCGGGAGAAATAATGAAAGCGTGTCCCTTGACACGAATACAAAATTTTCAACACACTTATCTACTCGAATTTGGCTTGCAt                                                                                                                                                    >  2:240780/1‑151 (MQ=255)
ctacAGTGATGAACGAGTAATGAAGAAACTTTTTTATGTGCATGAAGATTTAATGCCTCCTCCTTGAGCATCGGGAGAAATAATGAAAGCGTGTCCCTTGACACGAATACAAAATTTTCAACACACTTATCTACTCGAATTTGGCTTGCAt                                                                                                                                                    >  2:502895/1‑151 (MQ=255)
  acAGTGATGAACGAGTAATGAAGAAACTTTTTTATGTGCATGAAGATTTAATGCCTCCTCCTTGAGCATCGGGAGAAATAATGAAAGCGTGTCCCTTGACACGAATACAAAATTTTCAACACACTTATCTACTCGAATTTGGCTTGCCTc                                                                                                                                                   >  2:1608757/1‑150 (MQ=255)
     gTGATGAACGAGTCATGAAGAAACTTTTTTATGTGAATGAAGATTTAATGCCTCCTCCTTGAGCATCGGGAGAAATAATGAAAGCGTGTCCCTTGACACGAATACAAAATTTTCAACACACTTATCTACTCGAATTTGGCTTGCATCCGCa                                                                                                                                               >  1:1296655/1‑151 (MQ=255)
     gTGATGAACGAGTAATGAAGAAACTTTTTTATGTGCATGAAGATTTAATGCCTCCTCCTTGAGCATCGGGAGAAATAATGAAAGCGTGTCCCTTGACACGAATACAAAATTTTCAACACACTTATCTACTCGAATTTGGCTTGCATCCGCa                                                                                                                                               >  1:1428454/1‑151 (MQ=255)
           aaCGAGTAATGAAGAAACTTTTTTATGTGCATGAAGATTTAATGCCTCCTCCTTGAGCATCGGGAGAAATAATGAAAGCGTGTCCCTTGACACGAATACAAAATTTTCAACACACTTATCTACTCGGATTTGGCTTGCATCCGCAAAAAcc                                                                                                                                         <  2:1516039/151‑1 (MQ=255)
           aaCGAGTAATGAAGAAACTTTTTTATGTGCATGAAGATTTAATGCCTCCTCCTTGAGCATCGGGAGAAATAATGAAAGCGTGTCCCTTGACACGAATACAAAATTTTCAACACACTTATCTACTCGAATTTGGCTTGCATCCGCAAAAAcc                                                                                                                                         <  1:165243/151‑1 (MQ=255)
           aaCGAATAATGAAGAAACTTTTTTATGTGCATGAAGATTTAATGCCTCCTCCTTGAGCATCGGGAGAAATAATGAAAGCGTGTCCCTTGACACGAATACAAAATTTTCAACACACTTATCTACTCGAATTTGGCTTGCATCCGCAAAAAc                                                                                                                                          <  2:1739418/150‑1 (MQ=255)
                   aTGAAGAAACTTTTTTATGTGCATGAAGATTTAATGCCTCCTCCTTGAGCATCGGGAGAAATAATGAAAGCGTGTCCCTTGACACGAATACAAAATTTTCAACACACTTATCTACTCGAATTTGGCTTGCATCCGCAAAAACCAGGTCAc                                                                                                                                 >  2:1073568/1‑150 (MQ=255)
                            cTTTTTTATGTGCATGAAGATTTAATGCCTCCTCCTTGAGCATCGGGAGAAATAATGAAAGCGTGTCCCTTGACACGAATACAAAATTTTCAACACACTTATCTACTCGAATTTGGCTTGCATCCGCAAAAACCAGGTCACCGCCATTaaa                                                                                                                       >  1:403696/1‑151 (MQ=255)
                            cTTTTTTATGTGCATGAAGATTTAATGCCTCCTCCTTGAGCATCGGGAGAAATAATGAAAGCGTGTCCCTTGACACGAATACAAAATTTTCAACACACTTATCTACTCGAATTTGGCTTGCATCCGCAAAAACCAGGTCACCGCCATTaaa                                                                                                                       >  2:223075/1‑151 (MQ=255)
                             ttttttATGTGCATGAAGATTTAATCCCTCCTCCTTGAGAATCGGGAAAAATAATGAAAGCGTTCCCTTTGACACAAATACAAAATTTCCAACACCCTTATCTCCCCAATTTTGGCTTGCATCCCAAAAAACCAGGTCACCGCCATTaaaa                                                                                                                      <  1:550911/151‑1 (MQ=255)
                             ttttttATGTGCATAAAGATTTAATGCCTCCTCCTTGACCATCGGGAAAAATAATAAAAGCGTTTCCCTTGACACGAATACAAAATTTTCAACACCCTTATCTACTCGATTTTGGCTTGCATCCGAAAAAACCAGGTCACCGCCATTaaaa                                                                                                                      <  2:541546/151‑1 (MQ=255)
                                           aaaGTTTTAAGGCCTCCTCTTTGAGCATGGGAAAAAAAAATAAAGGCGGGCCCTTTGACACAAATAAAAAATTTCCACCACCTTTTTCTACAAAATTTTGGTTTGCACCCGAAAAAACCGGGTCACCGCCATTAAAATAGCGATATTCAcc                                                                                                        <  1:941795/150‑1 (MQ=255)
                                              gATTTAATGCCTCCTCCTTGAGCATCGGGAGAAATAATGAAAGCGTGTCCCTTGACACGAATACAAAATTTTCAACACACTTATCTACTCGAATTTGGCTTGCATCCGCAAAAACCAGGTCACCGCCATTAAAATAGCGATATTCACCAtt                                                                                                     >  2:182114/1‑151 (MQ=255)
                                               ttttAATGCCTCCCCCTTGAGCATCGGAAAAAATAATGAAAGCGTCTCCCTTGACACAAATAAAAAATTTACAACCCACTTATCTACTAGAATTTGGCTTCCACCCAAAAAAACCAGGTCACCGCCATTAAAATAGCGATATTCACCAt                                                                                                      <  1:930621/148‑1 (MQ=255)
                                               ttttAACCCCCCCTCCTTGACCATCGGAAAAAATAATAAAAGCGTCTCCCTTGACCCAAAAACAAAATTTTCAACACACTTATCTACTCGAATTTGGCTTGCACCCGCAAAACCCAGGTCACCGCCATTAAAATAGCGATATTCACCAt                                                                                                      <  2:261334/148‑1 (MQ=255)
                                                tttAATGCCTCCTCCTTGAGCATCGGGAGAAATAATGAAAGCGTGTCCCTTGACACGAATACAAAATTTTCAACACACTTATCTACTCGAATTTGGCTTGCATCCGCAAAAACCAGGTCACCGCCATTAAAATAGCGATATTCACCATTaa                                                                                                   >  1:656557/1‑151 (MQ=255)
                                                 ttAATGCCTCCTCCTTGACCTGCGGGAAAAATAATAAAAGCGTGTCCCTTGACACAAAAAAAAAATTTTCAACCCACTTATCTCCTCGAATTTGGCTTGCTCCCGCAAAAACCAGGTCACCGCCATTAAAATAGCGATATTCACCATTAAc                                                                                                  <  2:1020234/151‑1 (MQ=255)
                                                  tattcccccctcttTGAACATCGGGAAAAAAAATAAAGGCGTGTCCTTTGACACAAATAAAAAATTTTCAACCCACTTATCTACTCAATTTTGGCTTGCACCCGAAAAAACCAGGTCCCCGCCATTAAAATAGCGATATTCACCATTAAcc                                                                                                 <  1:741422/143‑1 (MQ=255)
                                                  tAATGCCTCCTCCTGGAGCATGGGAAAAAATAATAAAAGCGTTTCCCTTGACACAAAAAAAAAATTTTAAACACACTTATCTACCCAATTTGGGTTTCCACCCCAAAAAACCGGGCCACCGCCATTAAAATAGCGATATTCACCATTAAcc                                                                                                 <  1:134141/151‑1 (MQ=255)
                                                  tAATGCCCCCTCCTTGAGCATCGGGAAAAATAATAAAGGCGTGTCCCTTGACACAAATAAAAAATTTTCAACACACTTTTCTACTCGAATTTGGCTTGCACCCGAAAAAACCAGGTCACCGCCATTAAAATAGCGATATTCACCATTAAcc                                                                                                 <  2:132552/151‑1 (MQ=255)
                                                  tAATCCCCCCCCCTGGAGCACGGGGAAAAAAAATGAAAGCGTTTCCCTTAACACAAATAAAAAATTTACAACACACTTATCTTCTCGATTTTGGCTTCCCCCCGAAAAACCCAGGCCACCGCCATTAAAATAGCGATATTCACCATTAAcc                                                                                                 <  2:1369274/151‑1 (MQ=255)
                                                  aagacacacctcctTGAGCAGGGGGAAAAAAAAGGAAGCGGTGCCCCTTACAAAAAATAAAAAATTTCCAACACATTTATCTCCTGGATTTGGGCTTCCGCCCGAAAAAACCAGCTCCCCGCCATTAAAATAGCGATATTCACCATTAAcc                                                                                                 <  2:1433344/143‑1 (MQ=255)
                                                         cccccctTGAGCATGGGGAAAAAAAAAAAAAGGGTTTCCCTTAACACAAAAAAAAAATTTTCAACCCCCTTATCTACTCAAATTTGGCTTGCACCCGAAAAAACCAGGTCACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTga                                                                                          <  2:1564374/147‑1 (MQ=255)
                                                           ctcctTGAGCATCGGGAGAAATAATGAAAGCGTGTCCCTTGACACGAATACAAAATTTTCAACACACTTATCTACTCGAATTTGGCTTGCATCCGCAAAAACCAGGTCACCGCCATTAAAATAGCGATATTCACCATTAAcc                                                                                                 >  1:176588/1‑142 (MQ=255)
                                                           ctcctTGAGCATCGGGAGAAATAATGAAAGCGTGTCCCTTGACACGAATACAAAATTTTCAACACACTTATCTACTCGAATTTGGCTTGCATCCGCAAAAACCAGGTCACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTgaga                                                                                        >  2:942320/1‑151 (MQ=255)
                                                           ctcctTGAGCATCGGGAGAAATAATGAAAGCGTGTCCCTTGACACGAATACAAAATTTTCAACACACTTATCTACTCGAATTTGGCTTGCATCCGCAAAAACCAGGTCACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTgaga                                                                                        >  2:830458/1‑151 (MQ=255)
                                                            tcctTGAGCATCGGGAGAAATAATGAAAGCGTGTCCCTTGACACGAATACAAAATTTTCAACACACTTATCTACTCGAATTTGGCTTGCATCCGCAAAAACCAGGTCACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGaa                                                                                       >  1:883153/1‑151 (MQ=255)
                                                            tcctTGAGCATCGGGAGAAATAATGAAAGCGTGTCCCTTGACACGAATACAAAATTTTCAACACACTTATCTACTCGAATTTGGCTTGCATCCGCAAAAACCAGGTCACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGaa                                                                                       >  1:233037/1‑151 (MQ=255)
                                                             cctGGAGCATGGGAAAAAATAATGAAAGCTTGCCCCTTGACAAGAATAAAAATTTTACAACCCCCTTTTCTCCTGAATTTTGGCTTGCACCCGAAAAACCGAGGCCACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAat                                                                                      <  1:1176180/151‑1 (MQ=255)
                                                                tGAGCTGCGGGAGAAAAAATAAATGCGTGTCCCTTGACACAATTACAAAATTTTCAACCCCCTTATTTACTCAAATTTGGTTGGCATCCGAAAAAACCGGGTCACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAatata                                                                                   <  2:1469805/151‑1 (MQ=255)
                                                                tGAGCATGGGGAAAAAAAATAAAAGCGTGTCCTTTAACACAAAAAAAAAATTTTCAACACACTTATCTACTCAAATTTGGCTTGCACCCGAAAAAACCAGGTCACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAatata                                                                                   <  2:593567/151‑1 (MQ=255)
                                                                   gaaTCGGGAAAAAAAAAAAAGGCGTGTCCTTTGACACAAATAAAAAATTTCCAACACACTTATCTACTCAATTTGGGTTTCCACCCAAAAAAACCGGGACACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATAtt                                                                                <  1:972979/148‑1 (MQ=255)
                                                                   gCATGGGGAAAAAAAATGAAAGCGTGTCCTTTGACACAAATACAAAATTTACAACACCTTTATCTACGCAAATTTGGTTTCCACCCAAAAAAACCAGTTCACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATAtt                                                                                <  1:1188096/150‑1 (MQ=255)
                                                                   gCATGGGGAAAAAAAAGGAAAGCGTGTCCTTTGACACAAATAAAAAATTTCAAACACATTTATCTACTCAATTTTGGTTTCCACCCAAAAAAACCGGGTCACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATAtt                                                                                <  1:404371/150‑1 (MQ=255)
                                                                    cATGGGGAAAAAAAAAAAAGGCGGGCCCCTTGACACAAAAAAAAAATTTTCAACACACTTATCTCCTCGAATTTGGCTTGCACCCGAAAAAACCAGGTCACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATAtt                                                                                <  2:440065/149‑1 (MQ=255)
                                                                      tggggAAAAAAAATAAAGGCGTTCCCCTTGACAAAAAAAAAAATTTTTCAACCCCTTTATCTACTCAATTTTGGTTTGCACCCGAAAAAACCAGGTCACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATg                                                                            <  2:652499/149‑1 (MQ=255)
                                                                       cggaaaaaaTAATGAAGGCGTGCCCCTTGACACAAATAAAAAATTTCCAACACACTTATCTACTCAATTTGGGTTTCCACCCGAAAAAACCGGGTCACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGt                                                                           <  1:240709/145‑1 (MQ=255)
                                                                         ggAGAAATAATGAAAGCGTGTCCCTTGACACGAATACAAAATTTTCAACACACTTATCTACTCGAATTTGGCTTGCATCCGCAAAAACCAGGTCACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGt                                                                           >  1:104140/1‑149 (MQ=255)
                                                                         ggAAAAATAATGAAAGCGTGCCCCTTGCCAAAAAAACAAAATTTACAACACCTTTATCTACTCGATTTTGGCTTGCACCCGAAAAACCCAGGTCACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTc                                                                          <  2:427724/150‑1 (MQ=255)
                                                                          gaaaaaTAATAAAAGCGTTTCCTTTGACACAAATAAAAAATTTACAACACACTTATCTACTCAATTTTGGTTTGCACCCGAAAAAACCGGGTCCCCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCt                                                                         <  2:559190/147‑1 (MQ=255)
                                                                          aaaaaaaaaTAAAAGCGTGCCCCTGGACAAAAAAAAAAAATTTACAACACTCTTATCTACTCAATTTGGGCTTGCACCCGAAAAAACCAGGTAACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCt                                                                         <  2:1647778/147‑1 (MQ=255)
                                                                          aaaaaaTAATGAAGGCGTTCCCTTTGACACAAAAAAAAAATTTCCAACCCCTTTATCACCTAAATTTTGGCTTCCACCCAAAAAAACAGGGTCACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCt                                                                         <  1:373162/147‑1 (MQ=255)
                                                                            gaAATAATGAAAGCGTGTCCCTTGACACGAATACAAAATTTTCAACACACTTATCTACTCGAATTTGGCTTGCATCCGCAAAAACCAGGTCACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTg                                                                       >  1:1362513/1‑150 (MQ=255)
                                                                            gaAATAATGAAAGCGTGTCCCTTGACACGAATACAAAATTTTCAACACACTTATCTACTCGAATTTGGCTTGCATCCGCAAAAACCAGGTCACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTg                                                                       >  1:75242/1‑150 (MQ=255)
                                                                              aataatGAAAGCGTGTCCCTTGACACGAATACAAAATTTTCAACACACTTATCTACTCGAATTTGGCTTGCATCCGCAAAAACCAGGTCACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCAt                                                                    >  1:1001312/1‑151 (MQ=255)
                                                                                  atGAAAGCGTGTCCCTTGACACGAATACAAAATTTTCAACACACTTATCTACTCGAATTTGGCTTGCATCCGCAAAAACCAGGTCACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATACg                                                                 >  2:1415611/1‑150 (MQ=255)
                                                                                     aaaGCGTGTCCTTTGACACAAATACAAAATTTACAACACATTTATCTACTCAAATTTGGCTTGCACCCGAAAAACCCAGGTCACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATACGCAAt                                                             <  1:1738554/151‑1 (MQ=255)
                                                                                       aGCGTGTCCCTTGACACGAATACAAAATTTTCAACACACTTATCTACTCGAATTTGGCTTGCATCCGCAAAAACCAGGTCACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATACGCAATTa                                                           >  1:660473/1‑151 (MQ=255)
                                                                                       aGCGTGTCCCTTGACACGAATACAAAATTTTCAACACACTTATCTACTCGAATTTGGCTTGCATCCGCAAAAACCAGGTCACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATACGCAATTa                                                           >  2:473775/1‑151 (MQ=255)
                                                                                           tgtCCCTTGCCACAAATAAAAATTTTTCACCACTTTTATCTACTGAATTTTGGTTTGCACCCGAAAAAACCGGGTCACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATACGCAATTAGAc                                                        <  1:1431454/150‑1 (MQ=255)
                                                                                           tgtCCCTTAACACAAAAAAAAAATTTTCAACCCCTTTATCCACTCGATTTTGGTTTGCACCCCAAAAAACCAGGTCACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATACGCAATTAGAc                                                        <  2:1041056/150‑1 (MQ=255)
                                                                                           tcccctttaacacAAATAAAAAATTTACAACACACTTATCTACTCAAATTGGGTTTGCCCCCAAAAAAACAGGTCCACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATACGCAATTAGAc                                                        <  1:810116/141‑1 (MQ=255)
                                                                                              cccTTGACACGAATACAAAATTTTCAACACACTTATCTACTCGAATTTGGCTTGCATCCGCAAAAACCAGGTCACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATACGCAATTAGACAAtt                                                    >  1:564778/1‑151 (MQ=255)
                                                                                                cttgaaaaaaaaaaaaaaTTTCAAACACACTTATCTACTCAATTTGGGTTTGCACCCGAAAAAACCAGGTCACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATACGCAATTAGACAATTcc                                                  <  2:481328/137‑1 (MQ=255)
                                                                                                    ccacaAAAACAAAATTTTAAACACCCTTTTCTACTGAATTTTGGCTTCCACCCAAAAAAACCAGGTCACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATACGCAATTAGACAATTCCCATg                                              <  2:112370/150‑1 (MQ=255)
                                                                                                    acaaaaaTAAAAAATTTACAACACACTTATCTACTAAATTTTGTCTTGCACCCAAAAAAACCAGGTCACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATACGCAATTAGACAATTCCCATg                                              <  1:1319732/146‑1 (MQ=255)
                                                                                                       caaaaaaaaaaTTTACAACCCATTCATCTACTCGATTTGGGCTTGCACCCGAAAAAACCAGGTAACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATACGCAATTAGACAATTCCCATGTAg                                           <  1:501789/144‑1 (MQ=255)
                                                                                                       cGAATACAAAATTTTCAACACACTTATCTCCTCAATTTTGGCTTGCATCCGCAAAAACCAGGTCACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATACGCAATTAGACAATTCCCATGTAg                                           <  1:1456933/151‑1 (MQ=255)
                                                                                                       aaaaTAAAAAATTTACAACACATTTATCACCTCAATTTGGGCTTCCACCCGAAAAAACCAGGTCACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATACGCAATTAGACAATTCCCATGTAg                                           <  1:1526174/149‑1 (MQ=255)
                                                                                                        gAATACAAAATTTTCAACACACTTATCTACTCGAATTTGGCTTGCATCCGCAAAAACCAGGTCACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATACGCAATTAGACAATTCCCATGTAGt                                          >  1:273936/1‑151 (MQ=255)
                                                                                                         aaTAAAAAATTTTCAACACACTTATCTACTAGATTTTGGTTTGCATCCAAAAAACCCAGGTCACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATACGCAATTAGACAATTCCCATGTAGTg                                         <  1:446187/151‑1 (MQ=255)
                                                                                                              aaaaTTTACACCCCACTTACCTACAAAATTTTGGCTTGCACCCGAAAAAACAAGGTAACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATACGCAATTAGACAATTCCCATGTAGTGATTGc                                    <  1:563752/151‑1 (MQ=255)
                                                                                                                aaTTTTCAACACCCTTATCTACTCAAATTTGGCTTGCATCCGCAAAAACCAGGTCACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATACGCAATTAGACAATTCCCATGTAGTGATTGCAt                                  <  2:964626/151‑1 (MQ=255)
                                                                                                                aaTTTACAACCCATTTATCTACTAAATTTTGTTTTGCACCCAAAAAACCCGGTTCACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATACGCAATTAGACAATTCCCATGTAGTGATTGCAt                                  <  1:1756761/151‑1 (MQ=255)
                                                                                                                 aatttCAACCCCACTTATCTACGAGATTTTGGCCTACACCCAAAAAAACCAGTACACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATACGCAATTAGACAATTCCCATGTAGTGATTGCAt                                  <  1:586935/149‑1 (MQ=255)
                                                                                                                   tttCAACCCCCTTATCTACTCAAATTTGGCTTCCACCCCAAAAACCCGGGTCACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATACGCAATTAGACAATTCCCATGTAGTGATTGCATAGt                               <  2:660764/151‑1 (MQ=255)
                                                                                                                   tttCAACCCACTTATCTCCTCAAATTTGGCTTGCACCCGAAAAACCCAGGTCCCCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATACGCAATTAGACAATTCCCATGTAGTGATTGCATAGt                               <  2:763095/151‑1 (MQ=255)
                                                                                                                   tttCAACACACTTATCTACTCGAATTTGGCTTGCATCCGCAAAAACCAGGTCACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATACGCAATTAGACAATTCCCATGTAGTGATTGCATAGt                               >  1:1201851/1‑151 (MQ=255)
                                                                                                                   ttacAACACTCTTATCTACTCGATTTTGGCTTGCATCCGCAAAAACCAGGTCACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATACGCAATTAGACAATTCCCATGTAGTGATTGCATAGt                               <  1:429821/148‑1 (MQ=255)
                                                                                                                     tCAACACTTTTTTTTATTCAACTTTGGCTGGCACCAGAAAAAACCAGTCAACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATACGCAATTAGACAATTCCCATGTAGTGATTGCATAGTTg                             <  1:1717404/151‑1 (MQ=255)
                                                                                                                         acccatttttCTACTCGATTTTGGCTTGCACCCGAAAAAACCAGGTCACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATACGCAATTAGACAATTCCCATGTAGTGATTGCATAGTTGACt                          <  2:1061141/142‑1 (MQ=255)
                                                                                                                         acccacTTATCTACTCAAATTTGGTTTGCACCCAAAAAACCCGGGTCACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATACGCAATTAGACAATTCCCATGTAGTGATTGCATAGTTGACt                          <  1:1115305/148‑1 (MQ=255)
                                                                                                                          acacTTATCTACTCGAATTTGGCTTGCATCCGCAAAAACCAGGTCACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATACGCAATTAGACAATTCCCATGTAGTGTTTGCATAGTTGACTTa                        >  2:152743/1‑151 (MQ=255)
                                                                                                                            cacTTATCTACTCGAATTTGGCTTGCATCCGCAAAAACCAGGTCACCGCCCTTAAAATAACGATATTCACCATTAACCATGGGGAGAAAATATTTTTTTTTTTCATAAGCAATTAAACAATTTCCATTTAGTGGTTGCATAGTTGACttta                       >  2:403026/1‑149 (MQ=255)
                                                                                                                            cacTTATCTACTCGAATTTGGCTTGCATCCGCAAAAACCAGGTCACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATACGCAATTAGACAATTCCCATGTCGTGATTGCATAGTTGACTTaa                       >  2:1203769/1‑151 (MQ=255)
                                                                                                                            cacTTATCTACTCGAATTTGGCTTGCATCCGCAAAAACCAGGTCACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATACGCAATTAGACAATTCCCATGTAGTGATTGCATAGTTGACTTaa                       >  1:1277684/1‑151 (MQ=255)
                                                                                                                              cTTATCTACTCGAATTTGGCTTGCATCCGCAAAAACCAGGTCACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATACGCAATTAGACAATTCCCATGTAGTGATTGCATAGTTGACTTAata                     >  1:1484799/1‑151 (MQ=255)
                                                                                                                              cTTATCTACTCGAATTTGGCTTGCATCCGCAAAAACCAGGTCACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATACGCAATTAGACAATTCCCATGTAGTGATTGCATAGTTGACTTAata                     >  2:1431892/1‑151 (MQ=255)
                                                                                                                               ttATCTTCTAAATTTGGGCTTGCATCCAAAAAACCCAGGACCCCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATACGCAATTAGACAATTCCCATGTAGTGATTGCATAGTTGACTTAatat                    <  2:1547916/151‑1 (MQ=255)
                                                                                                                               ttATCTCCTAGATTTTGGTTTGCATCCAAAAAACCCAGGTCACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATACGCAATTAGACAATTCCCATGTAGTGATTGCATAGTTGACTTAatat                    <  2:783992/151‑1 (MQ=255)
                                                                                                                               ttATCTACTGAAATTTGGCTTGCACCCGAAAAAACCAGGTCACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATACGCAATTAGACAATTCCCATGTAGTGATTGCATAGTTGACTTAatat                    <  2:380539/151‑1 (MQ=255)
                                                                                                                               ttATCTACTCAATTTGGGCTTCCACCCGAAAAAACCAGGTCACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATACGCAATTAGACAATTCCCATGTAGTGATTGCATAGTTGACTTAatat                    <  1:613049/151‑1 (MQ=255)
                                                                                                                               ttATCTACTCAAATTTGGCTTGCACCCAAAAAAACCAGGTCACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATACGCAATTAGACAATTCCCATGTAGTGATTGCATAGTTGACTTAatat                    <  2:516940/151‑1 (MQ=255)
                                                                                                                               ttATCTACTAAATTTTGTTTTGCACCCACAAAACCCAGGTCACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATACGCAATTAGACAATTCCCATGTAGTGATTGCATAGTTGACTTAatat                    <  1:962260/151‑1 (MQ=255)
                                                                                                                               ttATCTACTAAAATTTGGTTTGCACCCGAAAAAACCGGGTCACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATACGCAATTAGACAATTCCCATGTAGTGATTGCATAGTTGACTTAatat                    <  2:766984/151‑1 (MQ=255)
                                                                                                                               ttATCTACAAAATTTTGGCTTGCCTCATAAAAAACCGGGTCACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATACGCAATTAGACAATTCCCATGTAGTGATTGCATAGTTGACTTAatat                    <  1:516263/151‑1 (MQ=255)
                                                                                                                                tacctactaAAATTTGGCTTGCACCCACAAAAACCAGGTCACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTTATGTCTTGCATACGCAATTAGACAATTCCCATGTAGTGATTGCATAGTTGACTTAatat                    <  1:229326/148‑1 (MQ=255)
                                                                                                                                tATCTACTCGAATTTGGCTTGCATCCGCAAAAACCAGGTCACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATACGCAATTAGACAATTCCCATGTAGTGATTGCATAGTTGACTTAATAtt                   >  2:984594/1‑151 (MQ=255)
                                                                                                                                          aaTTGGGCTTGCACCCGAAAAAACCAGTTCACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATACGCAATTAGACAATTCCCATGTAGTGATTGCATAGTTGACTTAATATTACATAAACat         <  2:1727678/151‑1 (MQ=255)
                                                                                                                                               ggCTTGCATCCGCAAAAACCAGGTCACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATACGCAATTAGACAATTCCCATGTAGTGATTGCATAGTTGACTTAATATTACATAAACATATTa     >  2:1373628/1‑150 (MQ=255)
                                                                                                                                                gtttGCATCCGAAAAAACCAGGACACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATACGCAATTAGACAATTCCCATGTAGTGATTGCATAGTTGACTTAATATTACATAAACATATTAc    <  1:1373011/148‑1 (MQ=255)
                                                                                                                                                gCTTGCACCCGAAAAACCCAGGTCACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATACGCAATTAGACAATTCCCATGTAGTGATTGCATAGTTGACTTAATATTACATAAACATATTAc    <  2:1288030/150‑1 (MQ=255)
                                                                                                                                                gCTTGCACCCAAAAAACCCAGGTCACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATACGCAATTAGACAATTCCCATGTAGTGATTGCATAGTTGACTTAATATTACATAAACATATTAc    <  2:1285469/150‑1 (MQ=255)
                                                                                                                                                gCTTGCACCCAAAAAAACCAGGTCACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATACGCAATTAGACAATTCCCATGTAGTGATTGCATAGTTGACTTAATATTACATAAACATATTAc    <  1:473609/150‑1 (MQ=255)
                                                                                                                                                gCTTCCACCCGAAAAACCCGGGTCCCCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATACGCAATTAGACAATTCCCATGTAGTGATTGCATAGTTGACTTAATATTACATAAACATATTAc    <  2:802249/150‑1 (MQ=255)
                                                                                                                                                       |                                                                                                                                                  
CTACAGTGATGAACGAGTAATGAAGAAACTTTTTTATGTGCATGAAGATTTAATGCCTCCTCCTTGAGCATCGGGAGAAATAATGAAAGCGTGTCCCTTGACACGAATACAAAATTTTCAACACACTTATCTACTCGAATTTGGCTTGCATCCGCAAAAACCAGGTCACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATACGCAATTAGACAATTCCCATGTAGTGATTGCATAGTTGACTTAATATTACATAAACATATTACTG  >  NC_000913/3665548‑3665842

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: