| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 3,736,160 | +A | intergenic (+3/+193) | xylR → / ← bax | xylose divergent operon transcriptional activator/putative glucosaminidase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,736,159 | 1 | . | A | 98.2% | 172.3 / ‑4.2 | 54 | intergenic (+2/+194) | xylR/bax | xylose divergent operon transcriptional activator/putative glucosaminidase |
| Reads supporting (aligned to +/- strand): ref base . (0/1); new base A (28/25); total (28/26) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.81e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
CCACCTTGTCGATCAATGAGATATCGCAAATGTGCGGTTATCCATCGCTGCAATATTTCTACTCTGTTTTTAAAAAAGCATATGACACGACGCCAAAAGAGTATCGCGATGTAAATAGCGAGGTCATGTTGTAGC‑G‑ATGATGAGAATTGTCGGCGTCACATCAGGTAACGCTGCGTGGTTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACCCGCCAGGCATGATAAAACGCACCAACAACGCTTCAGGCTCGTAGCTCAA > NC_000913/3736024‑3736287 | ccaccTTGTCGATCAATGAGATATCGCAAATGTGCGGTTATCCATCGCTGCAATATTTCTACTCTGTTTTTAAAAAAGCATATGACACGACGCCAAAAGAGTATCGCGATGTAAATAGCGAGGTCATGTTGTAAC‑g‑aat < 1:366789/139‑3 (MQ=255) cAATGAGATATCGCAAATGTGCGGTTATCCATCGCTGCAATATTTCTACTCTGTTTTTAAAAAAGCATATGACACGACGCCAAAAGAGTATCGCGATGTAAATAGCGAGGTCATGTTGTAAC‑GAATGATGAGAATTGTc < 2:656382/139‑1 (MQ=255) cAATGAGATATCGCAAATGTGCGGTTATCCATCGCTGCAATATTTCTACTCTGTTTTTAAAAAAGCATATGACACGACGCCAAAAGAGTATCGCGATGTAAATAGCGAGGTCATGTTGTAAC‑GAATGATGAGAATTGTc < 1:259499/139‑1 (MQ=255) aaTGAGATATCGCAAATGTGCGGTTATCCATCGCTGCAATATTTCTACTCTGTTTTTAAAAAAGCATATGACACGACGCCAAAAGAGTATCGCGATGTAAATAGCGAGGTCATGTTGTAAC‑GAATGATGAGAATTGTCg > 1:543634/1‑139 (MQ=255) gagaTATCGCAAATGTGCGGTTATCCATCGCTGCAATATTTCTACTCTGTTTTTAAAAAAGCATATGACACGACGCCAAAAGAGTATCGCGATGTAAATAGCGAGGTCATGTTGTAAC‑GAATGATGAGAATTGTCGGCg < 1:727202/139‑1 (MQ=255) gagaTATCGCAAATGTGCGGTTATCCATCGCTGCAATATTTCTACTCTGTTTTTAAAAAAGCATATGACACGACGCCAAAAGAGTATCGCGATGTAAATAGCGAGGTCATGTTGTAAC‑GAATGATGAGAATTGTCGGCg < 2:307030/139‑1 (MQ=255) agaTATCGCAAATGTGCGGTTATCCATCGCTGCAATATTTCTACTCTGTTTTTAAAAAAGCATATGACACGACGCCAAAAGAGTATCGCGATGTAAATAGCGAGGTCATGTTGTAAC‑GAATGATGAGAATTGTCGGCGt > 2:324959/1‑139 (MQ=255) atCGCAAATGTGCGGTTATCCATCGCTGCAATATTTCTACTCTGTTTTTAAAAAAGCATATGACACGCCGCCAAAAGAGTATCGCGATGTAAATAGCGAGGTCATGTTGTAAC‑GAATGATGAGAATTGTCGGCGTcaca < 1:659108/139‑1 (MQ=255) atCGCAAATGTGCGGTTATCCATCGCTGCAATATTTCTACTCTGTTTTTAAAAAAGCATATGACACGACGCCAAAAGAGTATCGCGATGTAAATAGCGAGGTCATGTTGTAAC‑GAATGATGAGAATTGTCGGCGTcaca > 1:785969/1‑139 (MQ=255) cGCAAATGTGCGGTTATCCATCGCTGCAATATTTCTACTCTGTTTTTAAAAAAGCATATGACTCGACGCCAAAAGAGTATCGCGATGTAAATAGCGAGGTCATGTTGTAAC‑GAATGATGGGAATTGTCGGCGTcaca > 1:523237/1‑137 (MQ=255) cGCAAATGTGCGGTTATCCATCGCTGCAATATTTCTACTCTGTTTTTAAAAAAGCATATGACACGACGCCAAAAGAGTATCGCGATGTAAATAGCGAGGTCATGTTGTAAC‑GAATGATGAGAATTGTCGGCGTcaca < 2:523237/137‑1 (MQ=255) cGCAAATGTGCGGTTATCCATCGCTGCAATATTTCTACTCTGTTTTTAAAAAAGCATATGACACGACGCCAAAAGAGTATCGCGATGTAAATAGCGAGGTCATGTTGTAAC‑GAATGATGAGAATTGTCGGCGTCACATc > 1:44911/1‑139 (MQ=255) aaTGTGCGGTTATCCATCGCTGCAATATTTCTACTCTGTTTTTAAAAAAGCATATGACACGACGCCAAAAGAGTATCGCGATGTAAATAGCGAGGTCATGTTGTAAC‑GAATGATGAGAATTGTCGGCGTCACATCAGGt > 2:531547/1‑139 (MQ=255) tgtgCGGTTATCCATCGCTGCAATATTTCTACTCTGTTTTTAAAAAAGCATATGACACGACGCCAAAAGAGTATCGCGATGTAAATAGCGAGGTCATGTTGTAAC‑GAATGATGAGAATTGTCGGCGTCACATCAGGTaa < 1:364098/139‑1 (MQ=255) tgtgCGGTTATCCATCGCTGCAATATTTCTACTCTGTTTTTAAAAAAGCATATGACACGACGCCAAAAGAGTATCGCGATGTAAATAGCGAGGTCATGTTGTAAC‑GAATGATGAGAATTGTCGGCGTCACATCAGGTaa < 1:531547/139‑1 (MQ=255) ttATCCATCGCTGCAATATTTCTACTCTGTTTTTAAAAAAGCATATGACACGACGCCAAAAGAGTATCGCGATGTAAATAGCGAGGTCATGTTGTAAC‑GAATGATGAGAATTGTCGGCGTCACATCAGGTAACGCTGCg < 2:72221/139‑1 (MQ=255) aTCCATCGCTGCAATATTTCTACTCTGTTTTTAAAAAAGCATATGACACGACGCCAAAAGAGTATCGCGATGTAAATAGCGAGGTCATGTTGTAAC‑GAATGATGAGAATTGTCGGCGTCACATCAGGTAACGCTGCGTg > 1:180266/1‑139 (MQ=255) cAATATTTCTACTCTGTTTTTAAAAAAGCATATGACACGACGCCAAAAGAGTATCGCGATGTAAATAGCGAGGTCATGTTGTAAC‑GAATGATGAGAATTGTCGGCGTCACATCAGGTAACGCTGCGTGGTTGTCGGATg > 2:780014/1‑139 (MQ=255) cAATATTTCTACTCTGTTTTTAAAAAAGCATATGACACGACGCCAAAAGAGTATCGCGATGTAAATAGCGAGGTCATGTTGTAAC‑GAATGATGAGAATTGTCGGCGTCACATCAGGTAACGCTGCGTGGTTGTCGGATg > 1:558671/1‑139 (MQ=255) tACTCTGTTTTTAAAAAAGCATATGACACGACGCCAAAAGAGTATCGCGATGTAAATAGCGAGGTCATGTTGTAAC‑GAATGATGAGAATTGTCGGCGTCACATCAGGTAACGCTGCGTGGTTGTCGGATGCGGCGTGaa < 1:324959/139‑1 (MQ=255) aCTCTGTTTTTAAAAAAGCATATGACACGACGCCAAAAGAGTATCGCGATGTAAATAGCGAGGTCATGTTGTAAC‑GAATGATGAGAATTGTCGGCGTCACATCAGGTAACGCTGCGTGGTTGTCGGATGCGGCGTGAAc > 1:167458/1‑139 (MQ=255) aCTCTGTTTTTAAAAAAGCATATGACACGACGCCAAAAGAGTATCGCGATGTAAATAGCGAGGTCATGTTGTAAC‑GAATGATGAGAATTGTCGGCGTCACATCAGGTAACGCTGCGTGGTTGTCGGATGCGGCGTGAAc > 1:287918/1‑139 (MQ=255) ctctGTTTTTAAAAAAGCATATGACACGACGCCAAAAGAGTATCGCGATGTAAATAGCGAGGTCATGTTGTAAC‑GAATGATGAGAATTGTCGGCGTCACATCAGGTAACGCTGCGTGGTTGTCGGATGCGGCGTGAACg < 2:167458/139‑1 (MQ=255) ctGTTTTTAAAAAAGCATATGACACGACGCCAAAAGAGTATCGCGATGTAAATAGCGAGGTCATGTTGTAAC‑GAATGATGAGAATTGTCGGCGTcaca > 1:132333/1‑98 (MQ=255) ctGTTTTTAAAAAAGCATATGACACGACGCCAAAAGAGTATCGCGATGTAAATAGCGAGGTCATGTTGTAAC‑GAATGATGAGAATTGTCGGCGTcaca < 2:132333/98‑1 (MQ=255) gTTTTTAAAAAAGCATATGACACGACGCCAAAAGAGTATCGCGATGTAAATAGCGAGGTCATGTTGTAAC‑GAATGATGAGAATTGTCGGCGTCACATCAGGTAACGCTGCGTGGTTGTCGGATGCGGCGTGAACGCCtt > 2:706325/1‑139 (MQ=255) tttttAAAAAAGCATATGACACGACGCCAAAAGAGTATTGCGAAGTAAATAGCGAGGTGATGTTGTAAC‑GAATGATGAGAATTGTCTGCGTCACATCAGGTAACGCTGCGTGGTTGTCGGATGCGGCGTGAACGCCttc > 2:662750/1‑138 (MQ=255) tAAAAAAGCATATGACACGACGCCAAAAGAGTATCGCGATGTAAATAGCGAGGTCATGTTGTAAC‑GAATGATGAGAATTGTCGGCGTCACATCAGGTAACGCTGCGTGGTTGTCGGATGCGGCGTGAACGCCTTATCCg < 2:558671/139‑1 (MQ=255) aaaGCATATGACACGACGCCAAAAGAGTATCGCGATGTAAATAGCGAGGTCATGTTGTAAC‑GAATGATGAGAATTGTCGGCGTCACATCAGGTAACGCTGCGTGGTTGTCGGATGCGGCGTGAACGCCTTATCCGACCt < 2:785969/139‑1 (MQ=255) aaGCATATGACACGACGCCAAAAGAGTATCGCGATGTAAATAGCGAGGTCATGTTGTAAC‑GAATGATGAGAATTGTCGGCGTCACATCAGGTAACGCTGCGTGGTTGTCGGATGCGGCGTGAACGCCTTATCCGACCTa < 1:780014/139‑1 (MQ=255) aaGCATATGACACGACGCCAAAAGAGTATCGCGATGTAAATAGCGAGGTCATGTTGTAAC‑GAATGATGAGAATTGTCGGCGTCACATCAGGTAACGCGGCGTGGATGTCGGATGCGGCGTGAACGCCTTATCCGACCTa < 1:535212/139‑1 (MQ=39) atGACACGACGCCAAAAGAGTATCGCGATGTAAATAGCGAGGTCATGTTGTAAC‑GAATGATGAGAATTGTCGGCGTCACATCAGGTAACGCTGCGTGGTTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACCCGcc < 1:212300/139‑1 (MQ=255) atGACACGACGCCAAAAGAGTATCGCGATGTAAATAGCGAGGTCATGTTGTAAC‑GAATGATGAGAATTGTCGGCGTCACATCAGGTAACGCTGCGTGGTTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACCCGcc < 2:719345/139‑1 (MQ=255) gacgCCAAAAGAGTATCGCGATGTAAATAGCGGGGTCATGTTGTAAC‑GAATGATGAGAATTGTCGGCGTCACATCAGGTAACGCTGCGTGGTTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACCCGCCAGGCATg > 1:475708/1‑139 (MQ=255) gacgCCAAAAGAGTATCGCGATGTAAATAGCGAGGTCATGTTGTAAC‑GAATGATGAGAATTGTCGGCGTCACATCAGGTAACGCTGCGTGGTTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACCCGCCAGGCATg > 1:594011/1‑139 (MQ=255) gCCAAAAGAGTATCGCGATGTAAATAGCGAGGTCATGTTGTAAC‑GAATGATGAGAATTGTCGGCGTCACATCAGGTAACGCTGCGTGGTTGTCGGATGCGGCGTGAACGCCTTATCCGACCt > 1:355225/1‑122 (MQ=255) gCCAAAAGAGTATCGCGATGTAAATAGCGAGGTCATGTTGTAAC‑GAATGATGAGAATTGTCGGCGTCACATCAGGTAACGCTGCGTGGTTGTCGGATGCGGCGTGAACGCCTTATCCGACCt < 2:355225/122‑1 (MQ=255) aTCGCGATGTAAATAGCGAGGTCATGTTGTAAC‑GAATGATGAGAATTGTCGGCGTCACATCAGGTAACGCTGCGTGGTTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACCCGCCAGGCATGATAAAACGCACcaa > 1:546439/1‑139 (MQ=255) tCGCGATGTAAATAGCGAGGTCATGTTGTAAC‑GAATGATGAGAATTGTCGGCGTcaca < 2:466233/58‑1 (MQ=255) tCGCGATGTAAATAGCGAGGTCATGTTGTAAC‑GAATGATGAGAATTGTCGGCGTcaca > 1:466233/1‑58 (MQ=255) aaTAGCGGGGTCATGTTGTAACGG‑ATGATGAGAATTGGCGGCGTCACATCAGGTAACGCTGCGTGGTTGTCGGATGCGGCGTGAACGCGTTATCCGACCTACCCGCCAGGCATGAGAAAACGCACCAACAACGCTTCAg < 1:662750/139‑1 (MQ=39) aGCGAGGTCATGTTGTAAC‑GAATGATGAGAATTGTCGGCGTCACATCAGGTAACGCTGCGTGGTTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACCCGCCAGGCATGATAAAACGCACCAACAACGCTTCAGGCt > 2:724978/1‑139 (MQ=255) aGCGAGGTCATGTTGTAAC‑GAATGATGAGAATTGTCGGCGTCACATCAGGTAACGCTGCGTGGTTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACCCGCCAGGCATGATAAAACGCACCAACAACGCTTCAGGCt < 1:504032/139‑1 (MQ=255) gAGGTCATGTTGTAAC‑GAATGATGAGAATTGTCGGCGTCACATCAGGTaa > 1:719759/1‑50 (MQ=255) gAGGTCATGTTGTAAC‑GAATGATGAGAATTGTCGGCGTCACATCAGGTaa < 2:719759/50‑1 (MQ=255) gAGGTCATGTTGTAAC‑GAATGATGAGAATTGTCGGCGTCACATCAGGTAACGCTGCGTGGTTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACCCGCCAGGCATGATAAAACGCACCAACAACGCTTCAGGCTCGt > 1:741106/1‑139 (MQ=255) aGGTCATGTTGTAAC‑GAATGATGAGAATTGTCGGCGTCACATCAGGTAACGCTGCGTGGTTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACCCGCCAGGCATGATAAAACGCACCAACAACGCTTCAGGCTCGTa > 1:427575/1‑139 (MQ=255) ggTCATGTTGTAAC‑GAATGATGAGAATTGTCGGCGTCACATCAGGTAACGCTGCGTGGTTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACCCGCCAGGCATGATAAAACGCACCAACAACGCTTCAGGCTCGTAg > 2:654891/1‑139 (MQ=255) ggTCATGTTGTAAC‑GAATGATGAGAATTGTCGGCGTCACATCAGGTAACGCTGCGTGGTTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACCCGCCAGGCATGATAAAACGCACCAACAACGCTTCAGGCTCGTAg > 1:400125/1‑139 (MQ=255) ggTCATGTTGTAAC‑GAATGATGAGAATTGTCGGCGTCACATCAGGTAACGCTGCGTGGTTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACCCGCCAGGCATGATAAAACGCACCAACAACGCTTCAGGCTCGTAg > 2:358320/1‑139 (MQ=255) ggTCATGTTGTAAC‑GAATGATGAGAATTGTCGGCGTCACATCAGGTAACGCTACGTGGTTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACCCGCCAGGCATGATAAAACGCACCAACAACGCTTCAGGCTCGTAg > 1:17362/1‑139 (MQ=255) cATGTTGTAAC‑GAATGATGAGAATTGTCGGCGTCACATCAGGTAACGCTGCGTGGTTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACCCGCCAGGCATGATAAAACGCACCAACAACGCTTCAGGCTCGTAGCTc < 1:724978/139‑1 (MQ=255) tgttgtAAC‑GAATGATGAGAATTGTCGGCGTCACATCAGGTAACGCTGCGTGGTTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACCCGCCAGGCATGATAAAACGCACCAACAACGCTTCAGGCTCGTAGCTCaa < 2:287918/139‑1 (MQ=255) tgttgtAAC‑GAATGATGAGAATTGTCGGCGTCACATCAGGTAACGCTGCGTGGTTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACCCGCCAGGCATGATAAAACGCACCAACAACGCTTCAGGCTCGTAGCTCaa > 2:236044/1‑139 (MQ=255) tgttgtAAC‑GAATGATGAGAATTGTCGGCGTCACATCAGGTAACGCTGCGTGGTTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACCCGCCAGGCATGATAAAACGCACCAACAACGCTTCAGGCTCGTAGCTCaa < 2:180266/139‑1 (MQ=255) | CCACCTTGTCGATCAATGAGATATCGCAAATGTGCGGTTATCCATCGCTGCAATATTTCTACTCTGTTTTTAAAAAAGCATATGACACGACGCCAAAAGAGTATCGCGATGTAAATAGCGAGGTCATGTTGTAGC‑G‑ATGATGAGAATTGTCGGCGTCACATCAGGTAACGCTGCGTGGTTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACCCGCCAGGCATGATAAAACGCACCAACAACGCTTCAGGCTCGTAGCTCAA > NC_000913/3736024‑3736287 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |