| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 3,815,888 | Δ1 bp | pseudogene (662/669 nt) | rph ← | ribonuclease PH (defective),enzyme, Degradation of RNA, RNase PH |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,815,886 | 0 | G | . | 97.8% | 349.8 / 1.8 | 89 | pseudogene (664/669 nt) | rph | ribonuclease PH (defective),enzyme, Degradation of RNA, RNase PH |
| Reads supporting (aligned to +/- strand): ref base G (0/0); major base . (42/45); minor base T (1/1); total (43/46) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
CTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGATTCCCCTCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCA > NC_000913/3815748‑3816016 | cTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGTTACAATGGATTCGATTCCCCTCg > 2:1738856/1‑139 (MQ=255) atatGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGTTACAATGGATTCGATTCCCCTC‑GGCCAGAGcc < 1:1713624/139‑1 (MQ=255) atatGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGTTACAATGGATTCGATTCCCCTC‑GGCCAGAGcc < 2:76580/139‑1 (MQ=255) aTGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGTTACAATGGATTCGATTCCCCTC‑GGCCAGAGCca < 2:1921820/130‑1 (MQ=255) aTGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGTTACAATGGATTCGATTCCCCTC‑GGCCAGAGCca > 1:1921820/1‑130 (MQ=255) aTGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGTTACAATGGATTCGATTCCCCTC‑GGCCAGAGCCAACAAGATGa > 2:1014622/1‑139 (MQ=255) aTGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGTTACAATGGATTCGATTCCCCTC‑GGCCAGAGCCAACAAGATGa > 2:1660888/1‑139 (MQ=255) aTGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGTTACAATGGATTCGATTCCCCTC‑GGCCAGAGCCAACAAGATGa > 1:769493/1‑139 (MQ=255) aTGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGTTACAATGGATTCGATTCCCCTC‑GGCCAGAGCCAACAAGATGa < 1:1738856/139‑1 (MQ=255) cTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGTTACAATGGATTCGATTCCCCTC‑GGCCAGAGCCAACAAGATGAGTAg < 2:769493/139‑1 (MQ=255) cTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGTTACAATGGATTCGATTCCCCTC‑GGCCAGAGCCAACAAGATGAGTAg < 1:1660888/139‑1 (MQ=255) ttCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGTTACAATGGATTCGATTCCCCTC‑GGCCAGAGCCAACAAGATGAGTAGc < 2:1932236/139‑1 (MQ=255) ttCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGTTACAATGGATTCGATTCCCCTC‑GGCCAGAGCCAACAAGATGAGTAGc > 1:1932236/1‑139 (MQ=255) tCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGTTACAATGGATTCGATTCCCCTC‑GGCCAGAGCCAACAAg < 2:230860/129‑1 (MQ=255) tCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGTTACAATGGATTCGATTCCCCTC‑GGCCAGAGCCAACAAg > 1:230860/1‑129 (MQ=255) aTCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGTTACAATGGATTCGATTCCCCTC‑GGCCAGAGCCAACAAg < 1:775215/120‑1 (MQ=255) aTCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGTTACAATGGATTCGATTCCCCTC‑GGCCAGAGCCAACAAg > 2:775215/1‑120 (MQ=255) aCTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGTTACAATGGATTCGATTCCCCTC‑GGCCAGAGCCAACAAGATGAg < 2:816829/120‑1 (MQ=255) aCTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGTTACAATGGATTCGATTCCCCTC‑GGCCAGAGCCAACAAGATGAg > 1:816829/1‑120 (MQ=255) aCTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGTTACAATGGATTCGATTCCCCT‑TGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAAc > 2:356156/1‑139 (MQ=255) tCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGTTACAATGGATTCGATTCCCCTC‑GGCCAGAGCcaac > 2:647633/1‑107 (MQ=255) tCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGTTACAATGGATTCGATTCCCCTC‑GGCCAGAGCcaac < 1:647633/107‑1 (MQ=255) tACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGTTACAATGGATTCGATTCCCCTC‑GGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGc > 2:420940/1‑135 (MQ=255) tACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGTTACAATGGATTCGATTCCCCTC‑GGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGc < 1:420940/135‑1 (MQ=255) aCAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGTTACAATGGATTCGATTCCCCTC‑GGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGcc < 1:1783097/139‑1 (MQ=255) cAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGTTACAATGGATTCGATTCCCCTC‑GGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCt > 1:1928229/1‑139 (MQ=255) aCAAAAAAAAGGCGACTGATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGTTACAATCGATTCGATTCCCCTC‑GGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCt > 1:1179309/1‑139 (MQ=255) aCAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGTTACAATGGATTCGATTCCCCTC‑GGCCAGAGCCAACAAGATGAGTAG‑‑CTTCATGGGTGAACGGCTCGCCTTCTGc > 1:880066/1‑139 (MQ=255) ggCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGTTACAATGGATTCGATTCCCCTC‑GGCCAGAGCCAACAAGATGAg < 2:655201/98‑1 (MQ=255) ggCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGTTACAATGGATTCGATTCCCCTC‑GGCCAGAGCCAACAAGATGAg > 1:655201/1‑98 (MQ=255) ggCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGTTACAATGGATTCGATTCCCCTC‑GGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGc > 2:1750935/1‑120 (MQ=255) ggCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGTTACAATGGATTCGATTCCCCTC‑GGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGc < 1:1750935/120‑1 (MQ=255) tcatcaGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGTTACAATGGATTCGATTCCCCTC‑GGCCAGAGCCAACAAg > 2:503284/1‑87 (MQ=255) tcatcaGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGTTACAATGGATTCGATTCCCCTC‑GGCCAGAGCCAACAAg < 1:503284/87‑1 (MQ=255) tcatcaGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGTTACAATGGATTCGATTCCCCTC‑GGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACtt < 2:1928229/139‑1 (MQ=255) gCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGTTACAATGGATTCGATTCCCCTC‑GGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGa > 2:280340/1‑100 (MQ=255) gCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGTTACAATGGATTCGATTCCCCTC‑GGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGa < 1:280340/100‑1 (MQ=255) gCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGTTACAATGGATTCGATTCCCCTC‑GGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGc > 1:1662417/1‑105 (MQ=255) gCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGTTACAATGGATTCGATTCCCCTC‑GGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGc < 2:1662417/105‑1 (MQ=255) gCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGTTACAATGGATTCGATTCCCCTC‑GGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTg > 1:873727/1‑125 (MQ=255) gCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGTTACAATGGATTCGATTCCCCTC‑GGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTg < 2:873727/125‑1 (MQ=255) ccTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGTTACAATGGATTCGATTCCCCTC‑GGCCAGAGCCAACAAGATGAGTAGct > 2:1689534/1‑87 (MQ=255) ccTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGTTACAATGGATTCGATTCCCCTC‑GGCCAGAGCCAACAAGATGAGTAGct < 1:1689534/87‑1 (MQ=255) ccTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGTTACAATGGATTCGATTCCCCTC‑GGCCAGAGCCAACAAGATGAGTAGCTCtt > 2:524494/1‑90 (MQ=255) ccTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGTTACAATGGATTCGATTCCCCTC‑GGCCAGAGCCAACAAGATGAGTAGCTCtt < 1:524494/90‑1 (MQ=255) ttAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGTTACAATGGATTCGATTCCCCTC‑GGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGcc > 1:720209/1‑139 (MQ=255) ttAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGTTACAATGGATTCGATTCCCCTC‑GGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGcc > 1:441620/1‑139 (MQ=255) aaaaaTCAGTTTGCCAGCGCCGCCTTCTGCGTCGTTACAATGGATTCGATTCCCCTCggc < 1:1475761/60‑2 (MQ=255) aaaaaTCAGTTTGCCAGCGCCGCCTTCTGCGTCGTTACAATGGATTCGATTCCCCTCggc > 2:1475761/1‑59 (MQ=255) aaaaTCAGTTTGCCAGCGCCGCCTTCTGCGTCGTTACAATGGATTCGATTCCCCTC‑GGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGt > 1:1766004/1‑139 (MQ=255) aaTCAGTTTGCCAGCGCCGCCTTCTGCGTCGTTACAATGGATTCGATTCCCCTC‑GGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCt < 2:1766004/139‑1 (MQ=255) aaTCAGTTTGCCAGCGCCGCCTTCTGCGTCGTTACAATGGATTCGATTCCCCT‑TGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCt < 1:356156/139‑1 (MQ=255) aGTTTGCCAGCGCCGCCTTCTGCGTCGTTACAATGGATTCGATTCCCCTC‑GGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCgg < 2:441620/139‑1 (MQ=255) tGCCAGCGCCGCCTTCTGCGTCGTTACAATGGATTCGATTCCCCTC‑GGCCAGAGCCAACAAg > 1:531183/1‑62 (MQ=255) tGCCAGCGCCGCCTTCTGCGTCGTTACAATGGATTCGATTCCCCTC‑GGCCAGAGCCAACAAg < 2:531183/62‑1 (MQ=255) tGCCAGCGCCGCCTTCTGCGTCGTTACAATGGATTCGATTCCCCTC‑GGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGtcat < 1:1014622/139‑1 (MQ=255) gCCAGCGCCGCCTTCTGCGTCGTTACAATGGATTCGATTCCCCTCggccag > 1:726175/1‑47 (MQ=255) gCCAGCGCCGCCTTCTGCGTCGTTACAATGGATTCGATTCCCCTCggccag < 2:726175/51‑5 (MQ=255) ccTTCTGCGTCGTTACAATGGATTCGATTCCCCTC‑GGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCa > 2:305035/1‑139 (MQ=255) tGCGTCGTTACAATGGATTCGATTCCCCTC‑GGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTc > 2:1608563/1‑133 (MQ=255) tGCGTCGTTACAATGGATTCGATTCCCCTC‑GGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTc < 1:1608563/133‑1 (MQ=255) tGCGTCGTTACAATGGATTCGATTCCCCTC‑GGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCg < 2:720209/139‑1 (MQ=255) gTCGTTACAATGGATTCGATTCCCCTC‑GGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGc > 1:939650/1‑70 (MQ=255) gTCGTTACAATGGATTCGATTCCCCTC‑GGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGc < 2:939650/70‑1 (MQ=255) aTGGATTCGATTCCCCTC‑GGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGtcat < 1:1064241/111‑1 (MQ=255) aTGGATTCGATTCCCCTC‑GGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGtcat > 2:1064241/1‑111 (MQ=255) aTGGATTCGATTCCCCTC‑GGCCAGAGCCAACAAGATGAGTAG‑‑CTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCaga < 2:880066/139‑1 (MQ=255) gattcgattcCCCTC‑GGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTccc < 1:1068074/75‑1 (MQ=255) gattcgattcCCCTC‑GGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTccc > 2:1068074/1‑75 (MQ=255) gattcgattcCCCTC‑GGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTccc > 2:810686/1‑75 (MQ=255) gattcgattcCCCTC‑GGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTccc < 1:810686/75‑1 (MQ=255) gattcgattcCCCTC‑GGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATgcgc < 2:433430/94‑1 (MQ=255) gattcgattcCCCTC‑GGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATgcgc > 1:433430/1‑94 (MQ=255) attcgattcCCCTC‑GGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTg > 2:677165/1‑51 (MQ=255) attcgattcCCCTC‑GGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTg < 1:677165/51‑1 (MQ=255) attcgattcCCCTC‑GGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTg > 2:2050959/1‑77 (MQ=255) attcgattcCCCTC‑GGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTg < 1:2050959/77‑1 (MQ=255) ttcgattcCCCTC‑GGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGt > 2:1762308/1‑49 (MQ=255) ttcgattcCCCTC‑GGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGt < 1:1762308/49‑1 (MQ=255) ttcgattcCCCTC‑GGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGaa > 1:70040/1‑52 (MQ=255) ttcgattcCCCTC‑GGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGaa < 2:70040/52‑1 (MQ=255) ttcgattcCCCTC‑GGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGc < 2:850708/56‑1 (MQ=255) ttcgattcCCCTC‑GGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGc > 1:850708/1‑56 (MQ=255) ttcgattcCCCTC‑GGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCgg < 1:725813/102‑1 (MQ=255) ttcgattcCCCTC‑GGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCgg > 2:725813/1‑102 (MQ=255) ttcgattcCCCTC‑GGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCAc < 2:1640198/109‑1 (MQ=255) ttcgattcCCCTC‑GGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCAc > 1:1640198/1‑109 (MQ=255) tcgattcCCCTC‑GGCCAGAGCCAACAAGATGAGTAg < 1:1296116/36‑1 (MQ=255) tcgattcCCCTC‑GGCCAGAGCCAACAAGATGAGTAg > 2:1296116/1‑36 (MQ=255) tcgattcCCCTC‑GGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTg > 1:2021966/1‑75 (MQ=255) tcgattcCCCTC‑GGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTg < 2:2021966/75‑1 (MQ=255) attcCCCTC‑GGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCa < 1:305035/139‑1 (MQ=255) cccTC‑GGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCTTc > 1:1549577/1‑92 (MQ=255) cccTC‑GGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCTTc < 2:1549577/92‑1 (MQ=255) | CTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGATTCCCCTCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCA > NC_000913/3815748‑3816016 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |