| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 509,038 | G→A | A781V (GCG→GTG) | copA ← | copper transporter |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 509,038 | 0 | G | A | 97.3% | 115.7 / NA | 37 | A781V (GCG→GTG) | copA | copper transporter |
| Reads supporting (aligned to +/- strand): ref base G (0/0); major base A (19/17); minor base C (1/0); total (20/17) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
CCGGTTGGCGTTACTCACTACGGTAATCGACGAGAGCGCCATTGCCGCTCCGGCAACTACCGGGTTAAGCAGTGTTCCAGTGAACGGCCACAAAATACCGGCGGCGACCGGAATACCGATACTGTTGTAGATAAACGCACCGAGCAGGTTCTGCTTCATGTTGTGCAGCGTTGCGCGGGAAATAGCGAGCGCATCCGCAACGCCCATCAGGCTATGGCGCATCAGGGTAATCGCCGCGGTTTCAATGGCAACATCACTGCCGCCACCCATCG > NC_000913/508902‑509173 | ccGGTTGGCGTTACTCACTACGGTAATCGACGAGAGCGCCATTGCCGCTCCGGCAACTACCGGGTTAAGCAGTGTTCCAGTGAACGGCCACAAAATACCGGCGGCGACCGGAATACCGATACTGTTGTAGATAAAcaca < 2:204845/139‑1 (MQ=255) tACTCACTACGGTAATCGACGAGAGCGCCATTGCCGCTCCGGCAACTACCGGGTTAAGCAGTGTTCCAGTGAACGGCCACAAAATACCGGCGGCGACCGGAATACCGATACTGTTGTAGATAAACACACCGAGCAGGtt < 1:890815/139‑1 (MQ=255) tACTCACTACGGTAATCGACGAGAGCGCCATTGCCGCTCCGGCAACTACCGGGTTAAGCAGTGTTCCAGTGAACGGCCACAAAATACCGGCGGCGACCGGAATACCGATACTGTTGTAGATAAACACACCGAGCAGGtt < 1:2027591/139‑1 (MQ=255) tAATCGACGAGAGCGCCATTGCCGCTCCGGCAACTACCGGGTTAAGCAGTGTTCCAGTGAACGGCCACAAAATACCGGCGGCGACCGGAATACCGATACTGTTGTAGATAAACACACCGAGCAGGTTCTGCTTCAtgtt > 2:1853093/1‑139 (MQ=255) gacgaGAGCGCCATTGCCGCTCCGGCAACTACCGGGTTAAGCAGTGTTCCAGTGAACGGCCACAAAATACCGGCGGCGACCGGAATACCGATACTGTTGTAGATAAACACACCGAGCAGGTTCTGCTTCATGTTGTGCa > 1:1330660/1‑139 (MQ=255) gacgaGAGCGCCATTGCCGCTCCGGCAACTACCGGGTTAAGCAGTGTTCCAGTGAACGGCCACAAAATACCGGCGGCGACCGGAATACCGATACTGTTGTAGATAAACACACCGAGCAGGTTCTGCTTCATGTTGTGCa > 1:345348/1‑139 (MQ=255) cgcCATTGCCGCTCCGGCAACTACCGGGTTAAGCAGTGTTCCAGTGAACGGCCACAAAATACCGGCGGCGACCGGAATACCGATACTGTTGTAGATAAACACACCGAGCAGGTTCTGCTTCATGTTGTGCAGCGTTgcg < 2:346044/139‑1 (MQ=255) cgcCATTGCCGCTCCGGCAACTACCGGGTTAAGCAGTGTTCCAGTGAACGGCCACAAAATACCGGCGGCGACCGGAATACCGATACTGTTGTAGATAAACACACCGAGCAGGTTCTGCTTCATGTTGTGCAGCGTTgcg < 2:1817836/139‑1 (MQ=255) ccGCTCCGGCAACTACCGGGTTAAGCAGTGTTCCAGTGAACGGCCACAAAATACCGGCGGCGACCGGAATACCGATACTGTTGTAGATAAACACACCGAGCAGGTTCTGCTTCATGTTGTGCAGCGTTGCGCGGGAAAt > 1:1200252/1‑139 (MQ=255) gCTCCGGCAACTACCGGGTTAAGCAGTGTTCCAGTGAACGGCCACAAAATACCGGCGGCGACCGGAATACCGATACTGTTGTAGATAAACACACCGAGCAGGTTCTGCTTCATGTTGTGCAGCGTTGCGCGGGAAATag > 1:257275/1‑139 (MQ=255) cGGCAACTACCGGGTTAAGCAGTGTTCCAGTGAACGGCCACAAAATACCGGCGGCGACCGGAATACCGATACTGTTGTAGATAAACACACCGAGTAGGTTCTGCTTCATGTTGTGCAGCGTTGCGCGGGAAATagcgag < 2:1494902/139‑1 (MQ=255) gCAACTACCGGGTTAAGCAGTGTTCCAGTGAACGGCCACAAAATACCGGCGGCGACCGGAATACCGATACTGTTGTAGATAAACACACCGAGCAGGtt > 1:574071/1‑98 (MQ=255) gCAACTACCGGGTTAAGCAGTGTTCCAGTGAACGGCCACAAAATACCGGCGGCGACCGGAATACCGATACTGTTGTAGATAAACACACCGAGCAGGtt < 2:574071/98‑1 (MQ=255) gCAACTACCGGGTTAAGCAGTGTTCCAGTGAACGGCCACAAAATACCGGCGGCGACCGGAATACCGATACTGTCGTAGATAAACCCACCGCGCAGGTTCTGCTTCATGTTGTGCAGCGTTGCGCGGGAACTagcgcgcg > 1:1412627/1‑139 (MQ=255) ggTTAAGCAGTGTTCCAGTGAACGGCCACAAAATACCGGCGGCGACCGGAATACCGATACTGTTGTAGATAAACACACCGAGCAGGTTCTGCTTCATGTTGTGCAGCGTTGCGCGGGAAATAGCGAGCGCATCCGCAAc < 2:345348/139‑1 (MQ=255) ggTTAAGCAGTGTTCCAGTGAACGGCCACAAAATACCGGCGGCGACCGGAATACCGATACTGTTGTAGATAAACACACCGAGCAGGTTCTGCTTCATGTTGTGCAGCGTTGCGCGGGAAATAGCGAGCGCATCCGCAAc < 2:717753/139‑1 (MQ=255) aGCAGTGTTCCAGTGAACGGCCACAAAATACCGGCGGCGACCGGAATACCGATACTGTTGTAGATAAacacac > 1:375865/1‑73 (MQ=255) aGCAGTGTTCCAGTGAACGGCCACAAAATACCGGCGGCGACCGGAATACCGATACTGTTGTAGATAAacacac < 2:375865/73‑1 (MQ=255) tgtTCCAGTGAACGGCCACAAAATACCGGCGGCGACCGGAATACCGATACTGTTGTAGATAAACACACCGAGCAGGTTCTGCTTCATGTTGTGCAGCGTTGCGCGGGAAATagcgag < 2:1391434/117‑1 (MQ=255) tgtTCCAGTGAACGGCCACAAAATACCGGCGGCGACCGGAATACCGATACTGTTGTAGATAAACACACCGAGCAGGTTCTGCTTCATGTTGTGCAGCGTTGCGCGGGAAATagcgag > 1:1391434/1‑117 (MQ=255) aaCGGCCACAAAATACCGGCGGCGACCGGAATACCGATACTGTTGTAGATAAACACACCGAGCAGGTTCTGCTTCATGTTGTGCAGCGTTGCGCGGGAAATAGCGAGCGCATCCGCAACGCCCATCAGGCTATGGCGCa < 2:1200252/139‑1 (MQ=255) cGGCCACAAAATACCGGCGGCGACCGGAATACCGATACTGTTGTAGATAAACACACCGAGCAGGTTCTGCTTCATGTTGTGCAGCGTTGCGCGGGAAATAGCGAGCGCATCCGCAACGCCCATCAgg > 2:715091/1‑127 (MQ=255) cGGCCACAAAATACCGGCGGCGACCGGAATACCGATACTGTTGTAGATAAACACACCGAGCAGGTTCTGCTTCATGTTGTGCAGCGTTGCGCGGGAAATAGCGAGCGCATCCGCAACGCCCATCAgg < 1:715091/127‑1 (MQ=255) cGGCCACAAAATACCGGCGGCGACCGGAATACCGATACTGTTGTAGATAAACACACCGAGCAGGTTCTGCTTCATGTTGTGCAGCGTTGCGCGGGAAATAGCGAGCGCATCCGCAACGCCCATCAGGCTATGGCGCATc > 2:653605/1‑139 (MQ=255) tACCGGCGGCGACCGGAATACCGATACTGTTGTAGATAAACACACCGAGCAGGtt > 2:560794/1‑55 (MQ=255) tACCGGCGGCGACCGGAATACCGATACTGTTGTAGATAAACACACCGAGCAGGtt < 1:560794/55‑1 (MQ=255) cggcggCGACCGGAATACCGATACTGTTGTAGATAAACACACCGAGCAGGTTCTGCTTCATGTTGTGCAGCGTTGCGCGGGAAATAGCGAGCGCATCCGCAACGCCCATCAGGCTATGGCGCATCAGGGTAATcgccgc > 1:825432/1‑139 (MQ=255) gcgACCGGAATACCGATACTGTTGTAGATAAAcaca < 2:1505912/36‑1 (MQ=255) gcgACCGGAATACCGATACTGTTGTAGATAAAcaca > 1:1505912/1‑36 (MQ=255) gcgACCGGAATACCGATACTGTTGTAGATAAACACACCGAGCAGGTTCTGCTTCATGTTGTGCAGCGTTGCGCGGGAAATAGCGAGCGCATCCGCAACGCCCATCAGGCTATGGCGCATCAGGGTAATCGCCGCGGttt > 1:1901738/1‑139 (MQ=255) cTGTTGTAGATAAACACACCGAGCGGGTTCTGCTTCATGTTGTGCAGCGTTGCGCGGGAAATAGCGAGCGCATCCGCAACGCCCATCAGGCTATGGCGCATCAGGGTAATCGCCGCGGTTTCAATGGCAACATCACTgc > 1:1391371/1‑139 (MQ=255) cTGTTGTAGATAAACACACCGAGCAGGTTCTGCTTCATGTtgtg > 2:959386/1‑44 (MQ=255) cTGTTGTAGATAAACACACCGAGCAGGTTCTGCTTCATGTtgtg < 1:959386/44‑1 (MQ=255) cTGTTGTAGATAAACACACCGAGCAGGTTCTGCTTCATGTTGTGCAGCGTTGCGCGGGAAATAGCGAGCGCATCCGCAACGCCCATCAGGCTATGGCGCATCAGGGTAATCGCCGCGGTTTCAATGGCAACATCACTgc > 2:311598/1‑139 (MQ=255) cTGTTGTAGATAAACACACCGAGCAGGTTCTGCTTCATGTTGTGCAGCGTTGCGCGGGAAATAGCGAGCGCATCCGCAACGCCCATCAGGCTATGGCGCATCAGGGTAATCGCCGCGGTTTCAATGGCAACATCACTgc > 1:1414626/1‑139 (MQ=255) ttgtAGATAAACACACCGAGCAGGTTCTGCTTCATGTTGTGCAGCGTTGCGCGGGAAATAGCGAGCGCATCCGCAACGCCCATCAGGCTa > 2:1845222/1‑90 (MQ=255) ttgtAGATAAACACACCGAGCAGGTTCTGCTTCATGTTGTGCAGCGTTGCGCGGGAAATAGCGAGCGCATCCGCAACGCCCATCAGGCTa < 1:1845222/90‑1 (MQ=255) ttgtAGATAAACACACCGAGCAGGTTCTGCTTCATGTTGTGCAGCGTTGCGCGGGAAATAGCGAGCGCATCCGCAACGCCCATCAGGCTATg < 1:905064/92‑1 (MQ=255) ttgtAGATAAACACACCGAGCAGGTTCTGCTTCATGTTGTGCAGCGTTGCGCGGGAAATAGCGAGCGCATCCGCAACGCCCATCAGGCTATg > 2:905064/1‑92 (MQ=255) ttgtAGATAAACACACCGAGCAGGTTCTGCTTCATGTTGTGCAGCGTTGCGCGGGAAATAGCGAGCGCATCCGCAACGCCCATCAGGCTATGGCGCATCAGGGTAATCGCCGCGGTTTCAATGGCAACATCACTgccgc > 1:1976820/1‑139 (MQ=255) aaCACACCGAGCAGGTTCTGCTTCATGTTGTGCAGCGTTGCGCGGGAAATAGCGAGCGCATCCGCAACGCCCATCAGGCTATGGCGCATCAGGGTAATCGCCGCGGTTTCAATGGCAACATCACTGCCTCCACCCATCg < 1:311598/139‑1 (MQ=255) aaCACACCGAGCAGGTTCTGCTTCATGTTGTGCAGCGTTGCGCGGGAAATAGCGAGCGCATCCGCAACGCCCATCAGGCTATGGCGCATCAGGGTAATCGCCGCGGTTTCAATGGCAACATCACTGCCGCCACCCATCg < 2:1976820/139‑1 (MQ=255) | CCGGTTGGCGTTACTCACTACGGTAATCGACGAGAGCGCCATTGCCGCTCCGGCAACTACCGGGTTAAGCAGTGTTCCAGTGAACGGCCACAAAATACCGGCGGCGACCGGAATACCGATACTGTTGTAGATAAACGCACCGAGCAGGTTCTGCTTCATGTTGTGCAGCGTTGCGCGGGAAATAGCGAGCGCATCCGCAACGCCCATCAGGCTATGGCGCATCAGGGTAATCGCCGCGGTTTCAATGGCAACATCACTGCCGCCACCCATCG > NC_000913/508902‑509173 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |