Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 2,073,175 T→C L546P (CTG→CCG)  flu → CP4‑44 prophage, antigen 43 (Ag43) phase‑variable biofilm formation autotransporter

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009132,073,1750TC100.0% 978.1 / NA 269L546P (CTG→CCG) fluCP4‑44 prophage, antigen 43 (Ag43) phase‑variable biofilm formation autotransporter
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base C (129/140);  total (129/140)

Only 100 of 269 total aligned reads displayed.

ACTGTCAGCAACACCACACTCACCCAGAAAGCCGTCAACCTGAATGAAGGCACGCTGACGCTGAACGACAGTACCGTCACCACGGATGTCATTGCTCAGCGCGGTACAGCCCTGAAGCTGACCGGCAGCACTGTGCTGAACGGTGCCATTGACCCCACGAATGTCACTCTCGCCTCCGGTGCCACCTGGAATATCCCCGATAACGCCACGGTGCAGTCGGTGGTGGATGACCTCAGCCATGCCGGACAGATTCATTTCACCTCCACCCGCA  >  NC_000913/2073039‑2073309
                                                                                                                                        |                                                                                                                                      
  tGTCAGCAACACCACACTCACCCAGAAAGCCGTCAACCTGAATGAAGGCACGCTGACGCTGAACGACAGTACCGTCACCACGGATGTCATTGCTCAGCGCGGTACAGCCCTGAAGCTGACCGGCAGCACTGTGCCGAAc                                                                                                                                    >  2:42420/1‑139 (MQ=255)
        cAACACCACACTCACCCAGAAAGCCGTCAACCTGAATGAAGGCACGCTGACGCTGAACGACAGTACCGTCACCACGGATGTCATTGCTCAGCGCGGTACAGCCCTGAAGCTGACCGGCAGCACTGTGCCGAACGGTGcc                                                                                                                              >  2:1510922/1‑139 (MQ=255)
        cAACACCACACTCACCCAGAAAGCCGTCAACCTGAATGAAGGCACGCTGACGCTGAACGACAGTACCGTCACCACGGATGTCATTGCTCAGCGCGGTACAGCCCTGAAGCTGACCGGCAGCACTGTGCCGAACGGTGcc                                                                                                                              >  1:1591596/1‑139 (MQ=255)
              cacaCTCACCCAGAAAGCCGTCAACCTGAATGAAGGCACGCTGACGCTGAACGACAGTACCGTCACCACGGATGTCATTGCTCAGCGCGGTACAGCCCTGAAGCTGACCGGCAGCACTGTGCCGAACGGTGCCATTGAc                                                                                                                        >  1:57180/1‑139 (MQ=255)
              cacaCTCACCCAGAAAGCCGTCAACCTGAATGAAGGCACGCTGACGCTGAACGACAGTACCGTCACCACGGATGTCATTGCTCAGCGCGGTACAGCCCTGAAGCTGACCGGCAGCACTGTGCCGAACGGTGCCATTGAc                                                                                                                        <  2:1059211/139‑1 (MQ=255)
                   tCACCCAGAAAGCCGTCAACCTGAATGAAGGCACGCTGACGCTGAACGACAGTACCGTCACCACGGATGTCATTGCTCAGCGCGGTACAGCCCTGAAGCTGACCGGCAGCACTGTGCCGAACGGTGCCATTGACCCCAc                                                                                                                   <  2:742732/139‑1 (MQ=255)
                     aCCCAGAAAGCCGTCAACCTGAATGAAGGCACGCTGACGCTGAACGACAGTACCGTCACCACGGATGTCATTGCTCAGCGCGGTACAGCCCTGAAGCTGACCGGCAGCACTGTGCCGAACGGTGCCAtt                                                                                                                           <  2:1339587/129‑1 (MQ=255)
                     aCCCAGAAAGCCGTCAACCTGAATGAAGGCACGCTGACGCTGAACGACAGTACCGTCACCACGGATGTCATTGCTCAGCGCGGTACAGCCCTGAAGCTGACCGGCAGCACTGTGCCGAACGGTGCCATTGACCCCACGa                                                                                                                 >  2:1799778/1‑139 (MQ=255)
                     aCCCAGAAAGCCGTCAACCTGAATGAAGGCACGCTGACGCTGAACGACAGTACCGTCACCACGGATGTCATTGCTCAGCGCGGTACAGCCCTGAAGCTGACCGGCAGCACTGTGCCGAACGGTGCCATTGACCCCACGa                                                                                                                 >  1:1096903/1‑139 (MQ=255)
                          gAAAGCCGTCAACCTGAATGAAGGCACGCTGACGCTGAACGACAGTACCGTCACCACGGATGTCATTGCTCAGCGCGGTACAGCCCTGAAGCTGACCGGCAGCACTGTGCCGAACGGTGCCATTGACCCCACGAATGTc                                                                                                            >  1:98669/1‑139 (MQ=255)
                           aaaGCCGTCAACCTGAATGAAGGCACGCTGACGCTGAACGACAGTACCGTCACCACGGATGTCATTGCTCAGCGCGGTACAGCCCTGAAGCTGACCGGCAGCACTGTGCCGAACGGTGCCATTGACCCCACGAATGTCa                                                                                                           <  2:251142/139‑1 (MQ=255)
                             aGCCGTCAACCTGAATGAAGGCACGCTGACGCTGAACGACAGTACCGTCACCACGGATGTCATTGCTCAGCGCGGTACAGCCCTGAAGCTGACCGGCAGCACTGTGCCGAACGGTGCCATTGACCCCACGAATGTCAct                                                                                                         <  2:69124/139‑1 (MQ=255)
                               tcGTCAACCTGAATGAAGGCACGCTGACGCTGAACGACAGTACCGTCACCACGGATGTCATTGCTCAGCGCGGTACAGCCCTGAAGCTGACCGGCAGCACTGTGCCGAACGGTGCCATTGACCCCACGAATGTCActct                                                                                                       >  2:896631/2‑139 (MQ=255)
                                cGTCAACCTGAATGAAGGCACGCTGACGCTGAACGACAGTACCGTCACCACGGATGTCATTGCTCAGCGCGGTACAGCCCTGAAGCTGACCGGCAGCACTGTGCCGAACGGTGCCATTGACCCCACGAATGTCActct                                                                                                       >  2:476039/1‑138 (MQ=255)
                                 gTCAACCTGAATGAAGGCACGCTGACGCTGAACGACAGTACCGTCACCACGGATGTCATTGCTCAGCGCGGTACAGCCCTGAAGCTGACCGGCAGCACTGTGCCGaa                                                                                                                                     <  1:1064838/107‑1 (MQ=255)
                                         gaatgaaGGCACGCTGACGCTGAACGACAGTACCGTCACCACGGATGTCATTGCTCAGCGCGGTACAGCCCTGAAGCTGACCGGCAGCACTGTGCCGAACGGTGCCATTGACCCCACGAATGTCACTCTCGCCTCCGGt                                                                                             <  1:866435/139‑1 (MQ=255)
                                         gaatgaaGGCACGCTGACGCTGAACGACAGTACCGTCACCACGGATGTCATTGCTCAGCGCGGTACAGCCCTGAAGCTGACCGGCAGCACTGTGCCGAACGGTGCCATTGACCCCACGAATGTCACTCTCGCCTCCGGt                                                                                             <  1:1164845/139‑1 (MQ=255)
                                               aGGCACGCTGACGCTGAACGACAGTACCGTCACCACGGATGTCATTGCTCAGCGCGGTACAGCCCTGAAGCTGACCGGCAGCACTGTGCCGAACGGTGCCATTGACCCCACGAATGTCACTCTCGCCTCCGGTGCCAcc                                                                                       <  1:605652/139‑1 (MQ=255)
                                                ggCACGCTGACGCTGAACGACAGTACCGTCACCACGGATGTCATTGCTCAGCGCGGTACAGCCCTGAAGCTGACCGGCAGCACTGTGCCGaa                                                                                                                                     <  1:411765/92‑1 (MQ=255)
                                                ggCACGCTGACGCTGAACGACAGTACCGTCACCACGGATGTCATTGCTCAGCGCGGTACAGCCCTGAAGCTGACCGGCAGCACTGTGCCGaa                                                                                                                                     >  2:411765/1‑92 (MQ=255)
                                                ggCACGCTGACGCTGAACGACAGTACCGTCACCACGGATGTCATTGCTCAGCGCGGTACAGCCCTGAAGCTGACCGGCAGCACTGTGCCGAACGGTGCCATTGACCCCACGAATGTCACTCTCGCCTCCGGTGCCACCt                                                                                      >  2:269038/1‑139 (MQ=255)
                                                ggCACGCTGACGCTGAACGACAGTACCGTCACCACGGATGTCATTGCTCAGCGCGGTACAGCCCTGAAGCTGACCGGCAGCACTGTGCCGAACGGCGCCAtt                                                                                                                           >  1:968597/1‑102 (MQ=255)
                                                ggCACGCTGACGCTGAACGACAGTACCGTCACCACGGATGTCATTGCTCAGCGCGGTACAGCCCTGAAGCTGACCGGCAGCACTGTGCCGAACGGCGCCAtt                                                                                                                           <  2:968597/102‑1 (MQ=255)
                                                 gCACGCTGACGCTGAACGACAGTACCGTCACCACGGATGTCATTGCTCAGCGCGGTACAGCCCTGAAGCTGACCGGCAGCACTGTGCCGAACGGTGCCATTGACCCCAc                                                                                                                   <  1:1986932/109‑1 (MQ=255)
                                                 gCACGCTGACGCTGAACGACAGTACCGTCACCACGGATGTCATTGCTCAGCGCGGTACAGCCCTGAAGCTGACCGGCAGCACTGTGCCGAACGGTGCCATTGACCCCAc                                                                                                                   >  2:1986932/1‑109 (MQ=255)
                                                 gCACGCTGACGCTGAACGACAGTACCGTCACCACGGATGTCATTGCTCAGCGCGGTACAGCCCTGAAGCTGACCGGCAGCACTGTGCCGAACGGTGCCATTGACCCCACGAATGTCACTCTCGCCTCCGGt                                                                                             <  1:1260244/131‑1 (MQ=255)
                                                   acgctgacgctgAACGACAGTACCGTCACCACGGATGTCATTGCTCAGCGCGGTACAGCCCTGAAGCTGACCGGCAGCACTGTGCCGAACGGTGCCATTGACCCCACGAATGTCACTCTCGCCTCCGGTGCCACCTGGa                                                                                   <  2:1732912/139‑1 (MQ=255)
                                                    cgctgacgctgaACGACAGTACCGTCACCACGGATGTCATTGCTCAGCGCGGTACAGCCCTGAAGCTGACCGGCAGCACTGTGCCGAACGGTGCCAtt                                                                                                                           <  1:222257/98‑1 (MQ=255)
                                                    cgctgacgctgaACGACAGTACCGTCACCACGGATGTCATTGCTCAGCGCGGTACAGCCCTGAAGCTGACCGGCAGCACTGTGCCGAACGGTGCCATTGACCCCACGAATGTCACTCTCGCCTCCGGTGc                                                                                           >  2:362841/1‑130 (MQ=255)
                                                    cgctgacgctgaACGACAGTACCGTCACCACGGATGTCATTGCTCAGCGCGGTACAGCCCTGAAGCTGACCGGCAGCACTGTGCCGAACGGTGCCATTGACCCCACGAATGTCACTCTCGCCTCCGGTGc                                                                                           <  1:362841/130‑1 (MQ=255)
                                                    cgctgacgctgaACGACAGTACCGTCACCACGGATGTCATTGCTCAGCGCGGTACAGCCCTGAAGCTGACCGGCAGCACTGTGCCGAACGGTGCCATTGACCCCACGAATGTCACTCTCGCCTCCGGTGCCACCTGGaa                                                                                  >  1:893356/1‑139 (MQ=255)
                                                    cgctgacgctgaACGACAGTACCGTCACCACGGATGTCATTGCTCAGCGCGGTACAGCCCTGAAGCTGACCGGCAGCACTGTGCCGAACGGTGCCATTGACCCCACGAATGTCACTCTCGCCTCCGGTGCCACCTGGaa                                                                                  >  1:460448/1‑139 (MQ=255)
                                                         acgctgaACGACAGTACCGTCACCACGGATGTCATTGCTCAGCGCGGTACAGCCCTGAAGCTGACCGGCAGCACTGTGCCGAACGGTGCCATTGACCCCACGAATGTCACTCTCGCCTCCGGTGCCACCTGGAATATcc                                                                             >  2:866108/1‑139 (MQ=255)
                                                         acgctgaACGACAGTACCGTCACCACGGATGTCATTGCTCAGCGCGGTACAGCCCTGAAGCTGACCGGCAGCACTGTGCCGAACGGTGCCATTGACCCCACGAATGTCACTCTCGCCTCCGGTGCCACCTGGAATATcc                                                                             >  1:238769/1‑139 (MQ=255)
                                                             tgaACGACAGTACCGTCACCACGGATGTCATTGCTCAGCGCGGTACAGCCCTGAAGCTGACCGGCAGCACTGTGCCGAACGGTGCCATTGACCCCACGAATGTCACTCTCGCCTCCGGTGCCACCTGGAATATCCCCGa                                                                         <  2:1293269/139‑1 (MQ=255)
                                                               aaCGACAGTACCGTCACCACGGATGTCATTGCTCAGCGCGGTACAGCCCTGAAGCTGACCGGCAGCACTGTGCCGAACGGTGCCATTGACCCCACGAATGTCACTCTCGCCTc                                                                                                 >  1:1714214/1‑113 (MQ=255)
                                                               aaCGACAGTACCGTCACCACGGATGTCATTGCTCAGCGCGGTACAGCCCTGAAGCTGACCGGCAGCACTGTGCCGAACGGTGCCATTGACCCCACGAATGTCACTCTCGCCTCCGGTGCCACCTGGa                                                                                   >  1:834088/1‑127 (MQ=255)
                                                                   aCAGTACCGTCACCACGGATGTCATTGCTCAGCGCGGTACAGCCCTGAAGCTGACCGGCAGCACTGTGCCGAACGGTGCCATTGACCCCACGAATGTCACTCTCGCCTCCGGTGCCACCTGGa                                                                                   <  1:1740567/123‑1 (MQ=255)
                                                                   aCAGTACCGTCACCACGGATGTCATTGCTCAGCGCGGTACAGCCCTGAAGCTGACCGGCAGCACTGTGCCGAACGGTGCCATTGACCCCACGAATGTCACTCTCGCCTCCGGTGCCACCTGGAATATCCCCGATAACGc                                                                   <  1:2039236/139‑1 (MQ=255)
                                                                    cAGTACCGTCACCACGGATGTCATTGCTCAGCGCGGTACAGCCCTGAAGCTGACCGGCAGCACTGTGCCGAACGGTGCCATTGACCCCACGAATGTCACTCTCGCCTCCGGTGCCACCTGGAATATCCCCGATAACGcc                                                                  <  2:1710794/139‑1 (MQ=255)
                                                                         ccGTCACCACGGATGTCATTGCTCAGCGCGGTACAGCCCTGAAGCTGACCGGCAGCACTGTGCCGAACGGTGCCATTGACCCCACGAATGTCACTCTCGCCTCCGGTGCCACCTGGAATATCCCCGATAACGCCACGGt                                                             >  2:956553/1‑139 (MQ=255)
                                                                         ccGTCACCACGGATGTCATTGCTCAGCGCGGTACAGCCCTGAAGCTGACCGGCAGCACTGTGCCGAACGGTGCCATTGACCCCACGAATGTCACTCTCGCCTCCGGTGCCACCTGGAATATCCCCGATAACGCCACGGt                                                             >  2:1611456/1‑139 (MQ=255)
                                                                            tCACCACGGATGTCATTGCTCAGCGCGGTACAGCCCTGAAGCTGACCGGCAGCACTGTGCCGAACgg                                                                                                                                  >  2:1775611/1‑67 (MQ=255)
                                                                            tCACCACGGATGTCATTGCTCAGCGCGGTACAGCCCTGAAGCTGACCGGCAGCACTGTGCCGAACGGTGCCATTGAc                                                                                                                        <  2:1851034/77‑1 (MQ=255)
                                                                            tCACCACGGATGTCATTGCTCAGCGCGGTACAGCCCTGAAGCTGACCGGCAGCACTGTGCCGAACGGTGCCATTGACCCCACGAATGTCACTCTCGCCTCCGGTg                                                                                            <  1:647327/105‑1 (MQ=255)
                                                                            tCACCACGGATGTCATTGCTCAGCGCGGTACAGCCCTGAAGCTGACCGGCAGCACTGTGCCGAACGGTGCCATTGACCCCACGAATGTCACTCTCGCCTCCGGTg                                                                                            >  2:647327/1‑105 (MQ=255)
                                                                            tCACCACGGATGTCATTGCTCAGCGCGGTACAGCCCTGAAGCTGACCGGCAGCACTGTGCCGAACGGTGCCATTGACCCCACGAATGTCACTCTCGCCTCCGGTg                                                                                            <  2:574687/105‑1 (MQ=255)
                                                                              accacGGATGTCATTGCTCAGCGCGGTACAGCCCTGAAGCTGACCGGCAGCACTGTGCCGAACg                                                                                                                                   >  1:732249/1‑64 (MQ=255)
                                                                              accacGGATGTCATTGCTCAGCGCGGTACAGCCCTGAAGCTGACCGGCAGCACTGTGCCGAACGGTGCCATTGACCCCACGAATGTCACTCTCGCCTCCGGTGCCACCTGGAATATCCCCGATAACGCCACGGTGCAGt                                                        <  1:1611456/139‑1 (MQ=255)
                                                                                       gTCATTGCTCAGCGCGGTACAGCCCTGAAGCTGACCGGCAGCACTGTGCCGAACGGTGCCATTGACCCCACGAATGTCACTCTCGCCTCCGGTGCCACCTGGAATATCCCCGATAACGCCACGGTGCAGTCGGtggtgg                                               <  1:956553/139‑1 (MQ=255)
                                                                                        tCATTGCTCAGCGCGGTACAGCCCTGAAGCTGACCGGCAGCACTGTGCCGAACGGTGCCATTGACCCCACGAATGTCACTCTCGCCTCCGGt                                                                                             >  2:1179733/1‑92 (MQ=255)
                                                                                        tCATTGCTCAGCGCGGTACAGCCCTGAAGCTGACCGGCAGCACTGTGCCGAACGGTGCCATTGACCCCACGAATGTCACTCTCGCCTCCGGTGCCACCTGGAATATCCCCGATAACGCCACGGTGCAGTCGGTGGTGGa                                              <  1:149899/139‑1 (MQ=255)
                                                                                        tCATTGCTCAGCGCGGTACAGCCCTGAAGCTGACCGGCAGCACTGTGCCGAACGGTGCCATTGACCCCACGAATGTCACTCTCGCCTCCGGTGCCACCTGGAATATCCCCGATAACGCCACGGTGCAGTCGGTGGTGGa                                              <  2:301766/139‑1 (MQ=255)
                                                                                           ttGCTCAGCGCGGTACAGCCCTGAAGCTGACCGGCAGCACTGTGCCGAACGGTGCCATTGACCCCACGAATGTCACTCTCGCCTCCGGTGCCACCTGGa                                                                                   >  1:271746/1‑99 (MQ=255)
                                                                                             gCTCAGCGCGGTACAGCCCTGAAGCTGACCGGCAGCACTGTGCCGAACg                                                                                                                                   <  2:1664903/49‑1 (MQ=255)
                                                                                              cTCAGCGCGGTACAGCCCTGAAGCTGACCGGCAGCACTGTGCCGAACGGTGCCATTGACCCCACGAATGTCACTCTCGCCTCCGGTg                                                                                            <  2:496125/87‑1 (MQ=255)
                                                                                              cTCAGCGCGGTACAGCCCTGAAGCTGACCGGCAGCACTGTGCCGAACGGTGCCATTGACCCCACGAATGTCACTCTCGCCTCCGGTGCCACCTGGAATATCCCCGATAACGCCACGGTGCAGt                                                        >  1:250036/1‑123 (MQ=255)
                                                                                              cTCAGCGCGGTACAGCCCTGAAGCTGACCGGCAGCACTGTGCCGAACGGTGCCATTGACCCCACGAATGTCACTCTCGCCTCCGGTGCCACCTGGAATATCCCCGATAACGCCACGGTGCAGTCGGTGGTGGATGACCt                                        >  2:111924/1‑139 (MQ=255)
                                                                                                   cgcgGTACAGCCCTGAAGCTGACCGGCAGCACTGTGCCGaa                                                                                                                                     <  1:1817290/41‑1 (MQ=255)
                                                                                                   cgcgGTACAGCCCTGAAGCTGACCGGCAGCACTGTGCCGAACGGTGCCATTGACCCCACGAATGTCActct                                                                                                       >  2:1242214/1‑71 (MQ=255)
                                                                                                   cgcgGTACAGCCCTGAAGCTGACCGGCAGCACTGTGCCGAACGGTGCCATTGACCCCACGAATGTCActct                                                                                                       <  1:1242214/71‑1 (MQ=255)
                                                                                                   cgcgGTACAGCCCTGAAGCTGACCGGCAGCACTGTGCCGAACGGTGCCATTGACCCCACGAATGTCACTCTCGCCTCCGGTGCCACCTGGAATATCCCCGATAACGCCACGGt                                                             >  1:1476381/1‑113 (MQ=255)
                                                                                                   cgcgGTACAGCCCTGAAGCTGACCGGCAGCACTGTGCCGAACGGTGCCATTGACCCCACGAATGTCACTCTCGCCTCCGGTGCCACCTGGAATATCCCCGATAACGCCACGGt                                                             <  2:1476381/113‑1 (MQ=255)
                                                                                                   cgcgGTACAGCCCTGAAGCTGACCGGCAGCACTGTGCCGAACGGTGCCATTGACCCCACGAATGTCACTCTCGCCTCCGGTGCCACCTGGAATATCCCCGATAACGCCACGGTGCAGTCGGTGGTGGATGACCTCAGcc                                   >  2:127272/1‑139 (MQ=255)
                                                                                                    gcgGTACAGCCCTGAAGCTGACCGGCAGCACTGTGCCGAACGGTGCCATTGACCCCACGAATGTCACTCTCGCCTCCGGTGCCACCTGGAATATc                                                                              <  2:189878/95‑1 (MQ=255)
                                                                                                       gTACAGCCCTGAAGCTGACCGGCAGCACTGTGCCGAACGGTGCCATTGACCCCACGAATGTCACTCTCGCCTCCGGTGCCACCTGGAATATCCCCGATAACGCCACGGTGCAGTCGGTGGTGGATGACCTCAGCCATGc                               <  1:1649289/139‑1 (MQ=255)
                                                                                                             cccTGAAGCTGACCGGCAGCACTGTGCCGAACGGTGCCATTGACCCCACGAATGTCACTCTCGCCTCCGGTGCCACCTGGAATATCCCCGATAACGCCACGGTGCAGTc                                                       <  1:1870448/109‑1 (MQ=255)
                                                                                                             cccTGAAGCTGACCGGCAGCACTGTGCCGAACGGTGCCATTGACCCCACGAATGTCACTCTCGCCTCCGGTGCCACCTGGAATATCCCCGATAACGCCACGGTGCAGTCGGTGGTGGa                                              <  2:1024381/118‑1 (MQ=255)
                                                                                                             cccTGAAGCTGACCGGCAGCACTGTGCCGAACGGTGCCATTGACCCCACGAATGTCACTCTCGCCTCCGGTGCCACCTGGAATATCCCCGATAACGCCACGGTGCAGTCGGTGGTGGa                                              >  1:1024381/1‑118 (MQ=255)
                                                                                                                 gAAGCTGACCGGCAGCACTGTGCCGAACGGTGCCATTGACCCCACGAATGTCACTCTCGCCTCCGGTGCCACCTGGAATATCCCCGATAACGCCACGGTGCAGTCGGTGGTGGATGACCTCAGCCATGCCGGACAGAtt                     <  1:135481/139‑1 (MQ=255)
                                                                                                                  aaGCTGACCGGCAGCACTGTGCCGAACGGTGCCAtt                                                                                                                           >  2:586210/1‑36 (MQ=255)
                                                                                                                  aaGCTGACCGGCAGCACTGTGCCGAACGGTGCCATTGACCCCACg                                                                                                                  >  2:334760/1‑45 (MQ=255)
                                                                                                                  aaGCTGACCGGCAGCACTGTGCCGAACGGTGCCATTGACCCCACg                                                                                                                  <  1:334760/45‑1 (MQ=255)
                                                                                                                  aaGCTGACCGGCAGCACTGTGCCGAACGGTGCCATTGACCCCACGAATg                                                                                                              >  1:578659/1‑49 (MQ=255)
                                                                                                                  aaGCTGACCGGCAGCACTGTGCCGAACGGTGCCATTGACCCCACGAATGTCACTCTCGCCTc                                                                                                 <  1:144109/62‑1 (MQ=255)
                                                                                                                  aaGCTGACCGGCAGCACTGTGCCGAACGGTGCCATTGACCCCACGAATGTCACTCTCGCCTCCGGt                                                                                             <  1:1006974/66‑1 (MQ=255)
                                                                                                                  aaGCTGACCGGCAGCACTGTGCCGAACGGTGCCATTGACCCCACGAATGTCACTCTCGCCTCCGGTg                                                                                            >  2:758507/1‑67 (MQ=255)
                                                                                                                  aaGCTGACCGGCAGCACTGTGCCGAACGGTGCCATTGACCCCACGAATGTCACTCTCGCCTCCGGTGCCACCTGGa                                                                                   <  2:1972655/76‑1 (MQ=255)
                                                                                                                  aaGCTGACCGGCAGCACTGTGCCGAACGGTGCCATTGACCCCACGAATGTCACTCTCGCCTCCGGTGCCACCTGGa                                                                                   >  1:1972655/1‑76 (MQ=255)
                                                                                                                  aaGCTGACCGGCAGCACTGTGCCGAACGGTGCCATTGACCCCACGAATGTCACTCTCGCCTCCGGTGCCACCTGGAATATCCCCGATAACGCCACGGTGCAGTCGGTGGTGGATGACCTCAGCCATGCCGGa                           <  1:1854501/132‑1 (MQ=255)
                                                                                                                  aaGCTGACCGGCAGCACTGTGCCGAACGGTGCCATTGACCCCACGAATGTCACTCTCGCCTCCGGTGCCACCTGGAATATCCCCGATAACGCCACGGTGCAGTCGGTGGTGGATGACCTCAGCCATGCCGGACAGAtt                     <  2:1407265/138‑1 (MQ=255)
                                                                                                                  aaGCTGACCGGCAGCACTGTGCCGAACGGTGCCATTGACCCCACGAATGTCACTCTCGCCTCCGGTGCCACCTGGAATATCCCCGATAACGCCACGGTGCAGTCGGTGGTGGATGACCTCAGCCATGCCGGACAGATTc                    >  2:1560431/1‑139 (MQ=255)
                                                                                                                  aaGCTGACCGGCAGCACTGTGCCGAACGGTGCCATTGACCCCACGAATGTCACTCTCGCCTCCGGTGCCACCTGGAATATCCCCGATAACGCCACGGTGCAGTCGGTGGTGGATGACCTCAGCCATGCCGGACAGATTc                    >  2:531599/1‑139 (MQ=255)
                                                                                                                  aaGCTGACCGGCAGCACTGTGCCGAACGGTGCCATTGACCCCACGAATGTCACTCTCGCCTCCGGTGCCACCTGGAATATCCCCGATAACGCCACGGTGCAGTCGGTGGTGGATGACCTCAGCCATGCCGGACAGATTc                    >  1:487310/1‑139 (MQ=255)
                                                                                                                     cTGACCGGCAGCACTGTGCCGAACGGTGCCATTGACCCCACGAATGTCACTCTCGCCTCCGGTGCCACCTGGAATATCCCCGATAACGCCACGGTGCAGTCGGTGGTGGATGACCTCAGCCATGCCGGACAGATTCAtt                 <  1:1299613/139‑1 (MQ=255)
                                                                                                                     cTGACCGGCAGCACTGTGCCGAACGGTGCCATTGACCCCACGAATGTCACTCTCGCCTCCGGTGCCACCTGGAATATCCCCGATAACGCCACGGTGCAGTCGGTGGTGGATGACCTCAGCCATGCCGGACAGATTCAtt                 <  2:829400/139‑1 (MQ=255)
                                                                                                                      tGACCGGCAGCACTGTGCCGAACGGTGCCATTGACCCCACGAATGTCACTCTCGCCTCCGGTGCCACCTGGAATATCCCCGATAACGCCACGGTGCAGTCGGTGGTGGATGACCTCAGCCATGCCGGACAGATTCAttt                <  2:460448/139‑1 (MQ=255)
                                                                                                                       gACCGGCAGCACTGTGCCGAACGGTGCCATTGACCCCACGAATGTCACTCTCGCCTCCGGTGCCACCTGGAATATCCCCGATaa                                                                      <  2:1634566/84‑1 (MQ=255)
                                                                                                                       gACCGGCAGCACTGTGCCGAACGGTGCCATTGACCCCACGAATGTCACTCTCGCCTCCGGTGCCACCTGGAATATCCCCGATaa                                                                      >  1:1634566/1‑84 (MQ=255)
                                                                                                                       gACCGGCAGCACTGTGCCGAACGGTGCCATTGACCCCACGAATGTCACTCTCGCCTCCGGTGCCACCTGGAATATCCCCGATAACGCCACGGTGCAGTCGGTGGTGGATGACCTCAGCCATGCCGGACAGATTCATTTc               >  2:428869/1‑139 (MQ=255)
                                                                                                                       gACCGGCAGCACTGTGCCGAACGGTGCCATTGACCCCACGAATGTCACTCTCGCCTCCGGTGCCACCTGGAATATCCCCGATAACGCCACGGTGCAGTCGGTGGTGGATGACCTCAGCCATGCCGGACAGATTCATTTc               >  1:469121/1‑139 (MQ=255)
                                                                                                                          cGGCAGCACTGTGCCGAACGGTGCCATTGACCCCACGAATGTCACTCTCGCCTCCGGTGCCAcc                                                                                       <  1:1547351/64‑1 (MQ=255)
                                                                                                                          cGGCAGCACTGTGCCGAACGGTGCCATTGACCCCACGAATGTCACTCTCGCCTCCGGTGCCAcc                                                                                       >  2:1547351/1‑64 (MQ=255)
                                                                                                                          cGGCAGCACTGTGCCGAACGGTGCCATTGACCCCACGAATGTCACTCTCGCCTCCGGTGCCACCTGGAATATCCCCGATAACGCCACGGTGCAGTCGGTGGTGGATGACCTCAGCCATGCCGGACAGATTCATTTCAcc            <  2:1869895/139‑1 (MQ=255)
                                                                                                                          cGGCAGCACTGTGCCGAACGGTGCCATTGACCCCACGAATGTCACTCTCGCCTCCGGTGCCACCTGGAATATCCCCGATAACGCCACGGTGCAGTCGGTGGTGGATGACCTCAGCCATGCCGGACAGATTCATTTCAcc            <  1:681665/139‑1 (MQ=255)
                                                                                                                          cGGCAGCACTGTGCCGAACGGTGCCATTGACCCCACGAATGTCACTCTCGCCTCCGGTGCCACCTGGAATATCCCCGATAACGCCACGGTGCAGTCGGTGGTGGATGACCTCAGCCATGCCGGACAGATTCATTTCAcc            <  1:1196257/139‑1 (MQ=255)
                                                                                                                            gcagcaCTGTGCCGAACGGTGCCATTGACCCCACGAATGTCACTCTCGCCTCCGGTGCCACCTGGAATATCCCCGATAACGCCACGGTGCAGTCGGTGGTGGATGACCTCAGCCATGCCGGACAGATTCATTTCACCTc          >  1:1912383/1‑139 (MQ=255)
                                                                                                                               gtaCTGTGCCGAACGGTGCCATTGACCCCACGAATGTCACTCTCGCCTCCGGTGCCACCTGGAATATCCCCGATAACGCCACGGTGCAGTCGGTGGTGGATGACCTCAGCCATGCCGGACAGATTCATTTCACCTCCAc       <  2:1072507/137‑1 (MQ=255)
                                                                                                                               gcaCTGTGCCGAACGGTGCCATTGACCCCACGAATGTCACTCTCGCCTCCGGTGCCACCTGGAATATCCCCGATAACGCCACGGTGCAGTCGGTGGTGGATGACCTCAGCCATGCCGGACAGATTCATTTCACCTCCAc       <  2:237443/139‑1 (MQ=255)
                                                                                                                               gcaCTGTGCCGAACGGTGCCATTGACCCCACGAATGTCACTCTCGCCTCCGGTGCCACCTGGAATATCCCCGATAACGCCACGGTGCAGTCGGTGGTGGATGACCTCAGCCATGCCGGACAGATTCATTTCACCTCCAc       <  1:1510922/139‑1 (MQ=255)
                                                                                                                                        |                                                                                                                                      
ACTGTCAGCAACACCACACTCACCCAGAAAGCCGTCAACCTGAATGAAGGCACGCTGACGCTGAACGACAGTACCGTCACCACGGATGTCATTGCTCAGCGCGGTACAGCCCTGAAGCTGACCGGCAGCACTGTGCTGAACGGTGCCATTGACCCCACGAATGTCACTCTCGCCTCCGGTGCCACCTGGAATATCCCCGATAACGCCACGGTGCAGTCGGTGGTGGATGACCTCAGCCATGCCGGACAGATTCATTTCACCTCCACCCGCA  >  NC_000913/2073039‑2073309

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑