Predicted mutation | ||||||
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evidence | seq id | position | mutation | annotation | gene | description |
RA | NC_000913 | 2,317,140 | G→A | R913W (CGG→TGG) | rcsC ← | hybrid sensory kinase in two‑component regulatory system with RcsB and YojN |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_000913 | 2,317,140 | 0 | G | A | 100.0% | 227.3 / NA | 70 | R913W (CGG→TGG) | rcsC | hybrid sensory kinase in two‑component regulatory system with RcsB and YojN |
Reads supporting (aligned to +/- strand): ref base G (0/0); new base A (35/35); total (35/35) |
GCGTAAACGCCTTATCCGTCCTACGAATCCCGCGATTTCCTGACCCTCTCGGCATATAACGTCAGCGTCTGTTTTATCACATCCAGCGTTACCGGCTTCGACAGGCAGCTGTCCATACCGGACTCCAGACACCGCTGCTTCTCTTCAGCCAACGCATTAGCAGTTACTCCGATTACCGGCAACGTCAGTCCCAACTGACGAATGCGTTGCGTCAAGCGGTAACCATCCATATTTGGCATGTTGACGTCGCTAAGCACGATATCAATAT > NC_000913/2317007‑2317274 | gcgTAAACGCCTTATCCGTCTTACGAATCCCGCGATTTCCTGACCCTCTCGGCATATAACGTCAGCGTCTGTTTTATCACATCCAGCGTTACCGGCTTCGACAGGCAGCTGTCCATACCGGACTCCAGACACCactgct < 1:1977726/139‑1 (MQ=255) cTTATCCGTCTTACGAATCCCGCGATTTCCTGACCCTCTCGGCATATAACGTCAGCGTCTGTTTTATCACATCCAGCGTTACCGGCTTCGACAGGCAGCTGTCCATACCGGACTCCAGACACCACTGCTTCTCTTCAGc > 2:1550105/1‑139 (MQ=255) ccGTCTTACGAATCCCGCGATTTCCTGACCCTCTCGGCATATAACGTCAGCGTCTGTTTTATCACATCCAGCGTTACCGGCTTCGACAGGCAGCTGTCCATACCGGACTCCAGACACCACTGCTTCTCtt < 1:1119113/130‑1 (MQ=255) ccGTCTTACGAATCCCGCGATTTCCTGACCCTCTCGGCATATAACGTCAGCGTCTGTTTTATCACATCCAGCGTTACCGGCTTCGACAGGCAGCTGTCCATACCGGACTCCAGACACCACTGCTTCTCtt > 2:1119113/1‑130 (MQ=255) cttACGAATCCCGCGATTTCCTGACCCTCTCGGCATATAACGTCAGCGTCTGTTTTATCACATCCAGCGTTACCGGCTTCGACAGGCAGCTGTCCATACCGGACTCCAGACACCACTGCTTCTCTTCAGCCAACGCAtt > 2:544314/3‑139 (MQ=255) aTCCCGCGATTTCCTGACCCTCTCGGCATATAACGTCAGCGTCTGTTTTATCACATCCAGCGTTACCGGCTTCGACAGGCAGCTGTCCATACCGGACTCCAGACACCACTGCTTCTCTTCAGCCAACGCATTAGCAGtt < 1:1936086/139‑1 (MQ=255) cgcgATTTCCTGACCCTCTCGGCATATAACGTCAGCGTCTGTTTTATCACATCCAGCGTTACCGGCTTCGACAGGCAGCTGTCCATACCGGACTCCAGACACCACTGCTTCTCTTCAGCCAACGCATTAGCAGTTACTc < 1:544314/139‑1 (MQ=255) cgATTTCCTGACCCTCTCGGCATATAACGTCAGCGTCTGTTTGATCACATCCAGCGTTACCGGCTTCGACAGGCAGCTGTCCATACCGGACTCCAGACACCACTGCTTCTCTTCCGCCAACGCATTAGCAGTTACTCCg > 2:1341309/1‑139 (MQ=255) ccTGACCCTCTCGGCATATAACGTCAGCGTCTGTTTTATCACATCCAGCGTTACCGGCTTCGACAGGCAGCTGTCCATACCGGACTCCAGACACCACTGCTTCTCtt > 2:1490062/1‑107 (MQ=255) ccTGACCCTCTCGGCATATAACGTCAGCGTCTGTTTTATCACATCCAGCGTTACCGGCTTCGACAGGCAGCTGTCCATACCGGACTCCAGACACCACTGCTTCTCtt < 1:1490062/107‑1 (MQ=255) aCCCTCTCGGCATATAACGTCAGCGTCTGTTTTATCACATCCAGCGTTACCGGCTTCGACAGGCAGCTGTCCATACCGGACTCCAGACACCACTGCTTCTCTTCAGCCAACGCATTAGCAGTTACTCCGATTACCGGCa > 1:1371692/1‑139 (MQ=255) ctctCGGCATATAACGTCAGCGTCTGTTTTATCACATCCAGCGTTACCGGCTTCGACAGGCAGCTGTCCATACCGGACTCCAGACACCACTGCTTCTCTTCAGCCAACGCATTAGCAGTTACTCCGATTACCGGCAACg < 2:440422/139‑1 (MQ=255) ctcGGCATATAACGTCAGCGTCTGTTTTATCACATCCAGCGTTACCGGCTTCGACAGGCAGCTGTCCATACCGGACTCCAGACACCACTGCTTCTCTTCAGCCAACGCATTAGCAGTTACTCCGATTACCGGCAACGTc > 2:564482/1‑139 (MQ=255) tcGGCATATAACGTCAGCGTCTGTTTTATCACATCCAGCGTTACCGGCTTCGACAGGCAGCTGTCCATACCGGACTCCAGACACCACTGCTTCTCTTCAGCCAACGCATTAGCAGTTACTCCGATTACCGGCAACGTCa > 2:296837/1‑139 (MQ=255) aaCGTCAGCGTCTGTTTTATCACATCCAGCGTTACCGGCTTCGACAGGCAGCTGTCCATACCGGACTCCAGACACCACTGCTTCTCTTCAGCCAACGCATTAGc < 1:613424/104‑1 (MQ=255) aaCGTCAGCGTCTGTTTTATCACATCCAGCGTTACCGGCTTCGACAGGCAGCTGTCCATACCGGACTCCAGACACCACTGCTTCTCTTCAGCCAACGCATTAGc > 2:613424/1‑104 (MQ=255) aaCGTCAGCGTCTGTTTTATCACATCCAGCGTTACCGGCTTCGACAGGCAGCTGTCCATACCGGACTCCAGACACCACTGCTTCTCTTCAGCCAACGCATTAGCAGTTACTCCGATTACCGGCAACGTCAGTCCCAACt > 2:1797039/1‑139 (MQ=255) aaCGTCAGCGTCTGTTTTATCACATCCAGCGTTACCGGCTTCGACAGGCAGCTGTCCATACCGGACTCCAGACACCACTGCTTCTCTTCAGCCAACGCATTAGCAGTTACTCCGATTACCGGCAACGTCAGTCCCAACt > 1:296832/1‑139 (MQ=255) aCGTCAGCGTCTGTTTTATCACATCCAGCGTTACCGGCTTCGACAGGCAGCTGTCCATACCGGACTCCAGACACCACTGCTTCTCTTCAGCCAACGCATTAGCAGTTACTCCGATTACCGGCAACGTCa > 2:436772/1‑129 (MQ=255) aCGTCAGCGTCTGTTTTATCACATCCAGCGTTACCGGCTTCGACAGGCAGCTGTCCATACCGGACTCCAGACACCACTGCTTCTCTTCAGCCAACGCATTAGCAGTTACTCCGATTACCGGCAACGTCa < 1:436772/129‑1 (MQ=255) cAGCGTCTGTTTTATCACATCCAGCGTTACCGGCTTCGACAGGCAGCTGTCCATACCGGACTCCAGACACCACTGCTTCTCTTCAGCCAACGCATTAGCAGTTACTCCGATTACCGGCAACGTCAGTCCCAACTGACGa > 2:1073312/1‑139 (MQ=255) aGCGTCTGTTTTATCACATCCAGCGTTACCGGCTTCGACAGGCAGCTGTCCATACCGGACTCCAGACACCACTGCTTCTCTTCAGCCaa > 2:501116/1‑89 (MQ=255) aGCGTCTGTTTTATCACATCCAGCGTTACCGGCTTCGACAGGCAGCTGTCCATACCGGACTCCAGACACCACTGCTTCTCTTCAGCCaa < 1:501116/89‑1 (MQ=255) gCGTCTGTTTTATCACATCCAGCGTTACCGGCTTCGACAGGCAGCTGTCCATACCGGACTCCAGACACCACTGCTTCTCtt < 2:251182/81‑1 (MQ=255) gCGTCTGTTTTATCACATCCAGCGTTACCGGCTTCGACAGGCAGCTGTCCATACCGGACTCCAGACACCACTGCTTCTCtt > 1:251182/1‑81 (MQ=255) aTCACATCCAGCGTTACCGGCTTCGACAGGCAGCTGTCCATACCGGACTCCAGACACCACTGCTTCTCTTCAGCCAACGCATTAGCAGTTACTCCGATTACCGGCAACGTCAGTCCCAACTGACGAATGCGTTGCGTCa > 1:375148/1‑139 (MQ=255) cacaTCCAGCGTTACCGGCTTCGACAGGCAGCTGTCCATACCGGACTCCAGACACCACTGCTTCTCTTCAGCCAACGCATTAGCAGTTACTCCGATTACCGGCAACGTCAGTCCCAACTGACGAATGCGTTGCGTCAAg < 1:296837/139‑1 (MQ=255) acaTCCAGCGTTACCGGCTTCGACAGGCAGCTGTCCATACCGGACTCCAGACACCACTGCTTCTCTTCAGCCAACGCATTAGCAGTTACTCCGATTACCGGCAACGTCAGTCCCAACTGACGAATGCGTTGCGTCAAGc < 1:1797039/139‑1 (MQ=255) caTCCAGCGTTACCGGCTTCGACAGGCAGCTGTCCATACCGGACTCCAGACACCactgct < 1:2044985/60‑1 (MQ=255) caTCCAGCGTTACCGGCTTCGACAGGCAGCTGTCCATACCGGACTCCAGACACCactgct > 2:2044985/1‑60 (MQ=255) tCCAGCGTTACCGGCTTCGACAGGCAGCTGTCCATACCGGACTCCAGACACCACTGCTTCTCTTCAGCCAACGCATTAGCAGTTACTCCGATTACCgg < 1:1901662/98‑1 (MQ=255) tCCAGCGTTACCGGCTTCGACAGGCAGCTGTCCATACCGGACTCCAGACACCACTGCTTCTCTTCAGCCAACGCATTAGCAGTTACTCCGATTACCgg > 2:1901662/1‑98 (MQ=255) tCCAGCGTTACCGGCTTCGACAGGCAGCTGTCCATACCGGACTCCAGACACCACTGCTTCTCTTCAGCCAACGCATTAGCAGTTACTCCGATTACCGGCAACGTCAGTCCCAACt > 2:603244/1‑115 (MQ=255) tCCAGCGTTACCGGCTTCGACAGGCAGCTGTCCATACCGGACTCCAGACACCACTGCTTCTCTTCAGCCAACGCATTAGCAGTTACTCCGATTACCGGCAACGTCAGTCCCAACt < 1:603244/115‑1 (MQ=255) tCCAGCGTTACCGGCTTCGACAGGCAGCTGTCCATACCGGACTCCAGACACCACTGCTTCTCTTCAGCCAACGCATTAGCAGTTACTCCGATTACCGGCAACGTCAGTCCCAACTGACGAATGCGTTGCGTCAAGCGGt > 1:345016/1‑139 (MQ=255) ccAGCGTTACCGGCTTCGACAGGCAGCTGTCCATACCGGACTCCAGACACCACTGCTTCTCTTCAGCCAACGCATTAGCAGTTACTCCGATTACCGGCAACGTCAGTCCCAACTGACGAATGCGTTGCGTCAAGCGGTa < 2:345016/139‑1 (MQ=255) aGCGTTACCGGCTTCGACAGGCAGCTGTCCATACCGGACTCCAGACACCACTGCTTCTCTTCAGCCAACGCATTAGCAGTTACTCCGATTACCGGCAACGTCAGTCCCAACTGACGAATGCGTTGCGTCAAGCGGTAAc < 1:1073312/139‑1 (MQ=255) cGTTACCGGCTTCGACAGGCAGCTGTCCATACCGGACTCCAGACACCACTGCTTCTCTTCAGCCAACGCATTAGCAGTTACTCCGATTACCGGCAACGTCAGTCCCAACTGACGAATGCGTTGCGTCAAGCGGTAAcca > 2:2031803/1‑139 (MQ=255) cGTTACCGGCTTCGACAGGCAGCTGTCCATACCGGACTCCAGACACCACTGCTTCTCTTCAGCCAACGCATTAGCAGTTACTCCGATTACCGGCAACGTCAGTCCCAACTGACGAATGCGTTGCGTCAAGCGGTAAcca > 2:2036996/1‑139 (MQ=255) cGTTACCGGCTTCGACAGGCAGCTGTCCATACCGGACTCCAGACACCACTGCTTCTCTTCAGCCAACGCATTAGCAGTTACTCCGATTACCGGCAACGTCAGTCCCAACTGACGAATGCGTTGCGTCAAGCGGTAAcca > 1:269874/1‑139 (MQ=255) gTTACCGGCTTCGACAGGCAGCTGTCCATACCGGACTCCAGACACCACTGCTTCTCTTCAGCCAACGCATTAGCAGTTACTCCGATTACCGGCAACGTCAGTCCCAACTGACGAATGCGTTGCGTCAAGCGGTAAccat < 2:269874/139‑1 (MQ=255) tACCGGCTTCGACAGGCAGCTGTCCATACCGGACTCCAGACACCACTGCTTCTCTTCAGCCaa > 2:1896778/1‑63 (MQ=255) tACCGGCTTCGACAGGCAGCTGTCCATACCGGACTCCAGACACCACTGCTTCTCTTCAGCCaa < 1:1896778/63‑1 (MQ=255) aCCGGCTTCGACAGGCAGCTGTCCATACCGGACTCCAGACACCACTGCTTCTCTTCAGcc < 1:108648/60‑1 (MQ=255) aCCGGCTTCGACAGGCAGCTGTCCATACCGGACTCCAGACACCACTGCTTCTCTTCAGcc > 2:108648/1‑60 (MQ=255) aCCGGCTTCGACAGGCAGCCGTCCATACCGGACTCCAGACACCACTGCTTCTCTTCAGCCAACGCATTAGCAGTTACTCCGATTACCGGCAACGTCAGTCCCAACTGACGAATGCGTTGCGTCAAGCGGTAAccatcca > 2:1370083/1‑139 (MQ=255) gCTTCGACAGGCAGCTGTCCATACCGGACTCCAGACACCACTGCTTCTCTTCAGCCAACGCATTAGCAGTTACTCCGATTACCGGCAACGTCAGTCCCAACTGACGAATGCGTTGCGTc < 2:467666/119‑1 (MQ=255) gCTTCGACAGGCAGCTGTCCATACCGGACTCCAGACACCACTGCTTCTCTTCAGCCAACGCATTAGCAGTTACTCCGATTACCGGCAACGTCAGTCCCAACTGACGAATGCGTTGCGTc > 1:467666/1‑119 (MQ=255) ttCGACAGGCAGCTGTCCATACCGGACTCCAGACACCACTGCTTCTCTTCAGCCAACGCAtt > 2:1756599/1‑62 (MQ=255) ttCGACAGGCAGCTGTCCATACCGGACTCCAGACACCACTGCTTCTCTTCAGCCAACGCAtt < 1:1756599/62‑1 (MQ=255) gACAGGCAGCTGTCCATACCGGACTCCAGACACCACTGCTTCTCTTCAGCCAACGCATTAGCAGTTACTCCGATTACCGGCAACGTCAGt < 2:737414/90‑1 (MQ=255) gACAGGCAGCTGTCCATACCGGACTCCAGACACCACTGCTTCTCTTCAGCCAACGCATTAGCAGTTACTCCGATTACCGGCAACGTCAGt > 1:737414/1‑90 (MQ=255) gCAGCTGTCCATACCGGACTCCAGACACCACTGCTTCTCTTCAGCCAACGCATTAGCAGTTACTCCGATTACCGGCAACGTCAGTCCCAACTGACGAATGCGTTGCGTCAAGCGGTAACCATCCATATTTGGCATGTTg > 2:845588/1‑139 (MQ=255) aGCTGTCCATACCGGACTCCAGACACCACTGCTTCTCTTCAGCCAACGCATTAGCAGTTACTCCGATTACCGGCAACGTCAGTCCCAACTGACGAATGCGTTGCGTCAAGCGGTAACCATCCATATTTGGCATGTTGAc < 1:2031803/139‑1 (MQ=255) gCTGTCCATACCGGACTCCAGACACCACTGCTTCTCTTCAGCCAACGCATTAGCAGTTACTCCGATTACCGGCAACGTCAGTCCCAACTGACGAATGCGTTGCGTCAAGCGGTAACCATCCATATTTGGCATGTTGACg < 2:1454614/139‑1 (MQ=255) ccGGACTCCAGACACCACTGCTTCTCTTCAGCCAACGCATTAGCAGTTACTCCGATTACCGGCAACGTCAGTCCCAACTGACGAATGCGTTGCGTCAAGCGGTAACCATCCATATTTGGCATGTTGACGTCGCTAAGCa < 2:296832/139‑1 (MQ=255) cGGACTCCAGACACCACTGCTTCTCTTCAGCCAACGCATTAGCAGTTACTCCGATTACCGGCAACGTCAGTCCCAACTGACGAATGCGTTGCGTCAAGCGGTAACCATCCATATTTGGCATGTTGACGTCGCTAAGCAc < 1:564482/139‑1 (MQ=255) ggACTCCAGACACCACTGCTTCTCTTCAGCCAACGCATTAGCAGTTACTCCGATTACCGGCAACGTCAGTCCCAACTGACGAATGCGTTGCGTCAAGCGGTAACCATCCATATTTGGCATGTTGACGTCGCTAAGCACg < 2:1106536/139‑1 (MQ=255) ggACTCCAGACACCACTGCTTCTCTTCAGCCAACGCATTAGCAGTTACTCCGATTACCGGCAACGTCAGTCCCAACTGACGAATGCGTTGCGTCAAGCGGTAACCATCCATATTTGGCATGTTGACGTCGCTAAGCACg < 2:1371692/139‑1 (MQ=255) aCTCCAGACACCACTGCTTCTCTTCAGCCAACGCATTAGCAGTTACTCCGATTACCGGc < 1:624563/59‑1 (MQ=255) aCTCCAGACACCACTGCTTCTCTTCAGCCAACGCATTAGCAGTTACTCCGATTACCGGc > 2:624563/1‑59 (MQ=255) aCTCCAGACACCACTGCTTCTCTTCAGCCAACGCATTAGCAGTTACTCCGATTACCGGCa < 1:819478/60‑1 (MQ=255) aCTCCAGACACCACTGCTTCTCTTCAGCCAACGCATTAGCAGTTACTCCGATTACCGGCa > 2:819478/1‑60 (MQ=255) aCTCCAGACACCACTGCTTCTCTTCAGCCAACGCATTAGCAGTTACTCCGATTACCGGCAACGTCAGTCCCAACTGa > 2:1357909/1‑77 (MQ=255) aCTCCAGACACCACTGCTTCTCTTCAGCCAACGCATTAGCAGTTACTCCGATTACCGGCAACGTCAGTCCCAACTGa < 1:1357909/77‑1 (MQ=255) aCTCCAGACACCACTGCTTCTCTTCAGCCAACGCATTAGCAGTTACTCCGATTACCGGCAACGTCAGTCCCAACTGACGAATGCGTTGCGTCAAGCGGTAACCATCCATATTTGGCATGTTGACGTCGCTAAGCACGat > 2:1510079/1‑139 (MQ=255) tCCAGACACCACTGCTTCTCTTCAGCCAACGCATTAGCAGTTACTCCGATTACCGGCAACGTCAGTCCCAACTGACGAATGCGTTGCGTCAAGCGGTAACCATCCATATTTGGCATGTTGACGTCGCTAAGCACGatat < 1:1550105/139‑1 (MQ=255) tCCAGACACCACTGCTTCTCTTCAGCCAACGCATTAGCAGTTACTCCGATTACCGGCAACGTCAGGCACAACTGACAAATGCGTTGCGTCAAGCGGTAACCATCCATATTTGGAATGTTGACGGCGCTAAGCACGatat < 1:1341309/139‑1 (MQ=255) cAGACACCACTGCTTCTCTTCAGCCAACGCATTAGCAGTTACTCCGATTACCGGCAACGTCAGTCCCAACTGACGAATGCGTTGCGTCAAGCGGTAAc > 2:113909/1‑98 (MQ=255) cAGACACCACTGCTTCTCTTCAGCCAACGCATTAGCAGTTACTCCGATTACCGGCAACGTCAGTCCCAACTGACGAATGCGTTGCGTCAAGCGGTAAc < 1:113909/98‑1 (MQ=255) gACACCACTGCTTCTCTTCAGCCAACGCATTAGCAGTTACTCCGATTACCGGCAACGTCAGTCCCAACTGACGAAtgcgttgcgt > 2:983136/1‑85 (MQ=255) gACACCACTGCTTCTCTTCAGCCAACGCATTAGCAGTTACTCCGATTACCGGCAACGTCAGTCCCAACTGACGAAtgcgttgcgt < 1:983136/85‑1 (MQ=255) gACACCACTGCTTCTCTTCAGCCAACGCATTAGCAGTTACTCCGATTACCGGCAACGTCAGTCCCAACTGACGAATGCGTTGCGTCAAGCGGTAACCATCCATATTTGGCATGTTGACGTCGCTAAGCACGATATCAat < 1:1510079/139‑1 (MQ=255) caccacTGCTTCTCTTCAGCCAACGCATTAGCAGTTACTCCGATTACCGGCAACGTCAGTCCCAACTGACGAATGCGTTGCGTCAAGCGGTAACCATCCATATTTGGCATGTTGACGTCGCTAAGCACGATATCAatat < 1:1370083/139‑1 (MQ=255) | GCGTAAACGCCTTATCCGTCCTACGAATCCCGCGATTTCCTGACCCTCTCGGCATATAACGTCAGCGTCTGTTTTATCACATCCAGCGTTACCGGCTTCGACAGGCAGCTGTCCATACCGGACTCCAGACACCGCTGCTTCTCTTCAGCCAACGCATTAGCAGTTACTCCGATTACCGGCAACGTCAGTCCCAACTGACGAATGCGTTGCGTCAAGCGGTAACCATCCATATTTGGCATGTTGACGTCGCTAAGCACGATATCAATAT > NC_000913/2317007‑2317274 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |