Predicted mutation | ||||||
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evidence | seq id | position | mutation | annotation | gene | description |
RA | NC_000913 | 2,826,413 | A→G | K8E (AAA→GAA) | srlE → | glucitol/sorbitol‑specific enzyme IIB component of PTS |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_000913 | 2,826,413 | 0 | A | G | 97.2% | 241.9 / ‑2.8 | 71 | K8E (AAA→GAA) | srlE | glucitol/sorbitol‑specific enzyme IIB component of PTS |
Reads supporting (aligned to +/- strand): ref base A (1/1); new base G (34/35); total (35/36) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 4.56e-01 |
TCACCAATTTCTTCCGCGGCTGGGTGACCGATCTGACCACCGCCATTTTTGAGAAAAAGATGGGCATTCAACTTGAACAAAAAGTTCACCTGGCAGGAGCAACATCATGACGCATATTCGGATCGAAAAAGGAACGGGTGGCTGGGGCGGCCCGCTTGAGCTGAAAGCCACGCCGGGAAAAAAAATCGTCTATATCACCGCCGGTACCCGGCCTGCGATTGTTGACAAACTGGCACAGCTTACTGGCTGGCAGGCTATTGA > NC_000913/2826286‑2826546 | tcACCAATTTCTTCCGCGGCTGGGTGACCGATCTGACCACCGCCATTTTTGAGAAAAAGATGGGCATTCAACTTGAACAAAAAGTTCACCTGGCAGGAGCAACATCATGACGCATATTCGGATCGAAGAAGGAACGGGt > 2:1673602/1‑139 (MQ=255) aCCAATTTCTTCCGCGGCTGGGTGACCGATCTGACCACCGCCATTTTTGAGAAAAAGATGGGCATTCAACTTGAACAAAAAGTTCACCTGGCAGGAGCAACATCATGACGCATATTCGGATCGAAGAAGGAACGGGTgg > 1:1570843/1‑139 (MQ=255) ttcttcCGCGGCTGGGTGACCGATCTGACCACCGCCATTTTTGAGAAAAAGATGGGCATTCAACTTGAACAAAAAGTTCACCTGGCAGGAGCAACATCATGACGCATATTCGGATCGAAGAAGGAACGGGTGGCTgggg < 2:1649952/139‑1 (MQ=255) ttcCGCGGCTGGGTGACCGATCTGACCACCGCCATTTTTGAGAAAAAGATGGGCATTCAACTTGAACAAAAAGTTCACCTGGCAGGAGCAACATCATGACGCATATTCGGATCGAAGAAGGAACGGGTGGCTGGggcgg < 1:435508/139‑1 (MQ=255) ccGCGGCTGGGTGACCGATCTGACCACCGCCATTTTTGAGAAAAAGATGGGCATTCAACTTGAACAAAAAGTTCACCTGGCAGGAGCAACATCATGACGCATATTCGGATCGAAGAAGGAACGGGTGGCTGGGGCGGcc < 2:1028895/139‑1 (MQ=255) gTGACCGATCTGACCACCGCCATTTTTGAGAAAAAGATGGGCATTCAACTTGAACAAAAAGTTCACCTGGCAGGAGCAACATCATGACGCATATTCGGATCGAAGAAGGAACGGGTGGCTGGGGCGGCCCGCTTGAGCt > 1:1503565/1‑139 (MQ=255) ccGATCTGACCACCGCCATTTTTGAGAAAAAGATGGGCATTCAACTTGAACAAAAAGTTCACCTGGCAGGAGCAACATCATGACGCATATTCGGATCGAAGAAGGAACGGGTGGCTGGGGCGGCCCGCTTGAg > 1:836380/1‑133 (MQ=255) ccGATCTGACCACCGCCATTTTTGAGAAAAAGATGGGCATTCAACTTGAACAAAAAGTTCACCTGGCAGGAGCAACATCATGACGCATATTCGGATCGAAGAAGGAACGGGTGGCTGGGGCGGCCCGCTTGAg < 2:836380/133‑1 (MQ=255) gACCACCGCCATTTTTGAGAAAAAGATGGGCATTCAACTTGAACAAAAAGTTCACCTGGCAGGAGCAACATCATGACGCATATTCGGATCGAAGAAGGAACGGGTGGCTGGGGCGGCCCGCTTGAGCTGAAAGCCACGc > 1:1020558/1‑139 (MQ=255) cGCCATTTTTGAGAAAAAGATGGGCATTCAACTTGAACAAAAAGTTCACCTGGCAGGAGCAACATCATGACGCATATTCGGATCGAAGAAGGAACGGGTGGCTGGGGCGGCCCGCTTGAGCTGAAAGCCACGCCGGGaa > 2:197189/1‑139 (MQ=255) cGCCATTTTTGAGAAAAAGATGGGCATTCAACTTGAACAAAAAGTTCACCTGGCAGGAGCAACATCATGACGCATATTCGGATCGAAGAAGGAACGGGTGGCTGGGGCGGCCCGCTTGAGCTGAAAGCCACGCCGGGaa > 2:1066078/1‑139 (MQ=255) tttttGAGAAAAAGATGGGCATTCAACTTGAACAAAAAGTTCACCTGGCAGGAGCAACATCATGACGCATATTCGGATCGAAGAAGGAACGGGTGGCTGGGGCGGCCCGCTTGAGCTGAAAGCCACGCCGGGaaaaaaa < 2:1734310/139‑1 (MQ=255) ttttGAGAAAAAGATGGGCATTCAACTTGAACAAAAAGTTCACCTGGCAGGAGCAACATCATGACGCATACTCGGATCGAAGAAGGAACGGGTGGCTGGGGCGGCCCGCTTGAGCTGAAAGCCACGCCGGGaaaaaaaa < 2:1278997/139‑1 (MQ=255) tGAGAAAAAGATGGGCATTCAACTTGAACAAAAAGTTCACCTGGCAGGAGCAACATCATGACGCATATTCGGATCGAAGAAGGAACGGGTGGCTGGGGCGGCCCGCTTGAGCTGAAAGCCACGCCGGGAAAAAAAATCg < 2:722190/139‑1 (MQ=255) gagaAAAAGATGGGCATTCAACTTGAACAAAAAGTTCACCTGGCAGGAGCAACATCATTACGCATATTCGGATCGAAGAAGGAACGGGTGGCTGGGGCGGCCCGCTTGAGCTGAAAGCCACGCCGGGAAAAAAAATCGt < 1:422151/139‑1 (MQ=255) gagaAAAAGATGGGCATTCAACTTGAACAAAAAGTTCACCTGGCAGGAGCAACATCATGACGCATATTCGGATCGAAGAAGGAACGGGTGGCTGGGGCGGCCCGCTTGAGCTGAAAGCCACGCCGGGAAAAAAAATCGt > 1:1303874/1‑139 (MQ=255) aTGGGCATTCAACTTGAACAAAAAGTTCACCTGGCAGGAGCAACATCATGACGCATATTCGGATCGAAGAAGGAACGGGTGGCTGGGGCGGCCCGCTTGAGCTGAAAGCCACGCCGGGAAAAAAAATCGTCTATATCAc < 1:197189/139‑1 (MQ=255) gggCATTCAACTTGAACAAAAAGTTCACCTGGCAGGAGCAACATCATGACGCATATTCGGATCGAAGAAGGAACGGGTGGCTGGGGCGGCCCGCTTGAGCTGAAAGCCACGCCg < 2:1888665/114‑1 (MQ=255) gggCATTCAACTTGAACAAAAAGTTCACCTGGCAGGAGCAACATCATGACGCATATTCGGATCGAAGAAGGAACGGGTGGCTGGGGCGGCCCGCTTGAGCTGAAAGCCACGCCg > 1:1888665/1‑114 (MQ=255) gCATTCAACTTGAACAAAAAGTTCACCTGGCAGGAGCAACATCATGACGCATATTCGGATCGAAGAAGGAACGGGTGGCTGGGGCGGCCCGCTTGAGCTGAAAGCCACGCCGGGAAAAAAAATCGTCTATATCAccgcc > 1:1290744/1‑139 (MQ=255) ttCAACTTGAACAAAAAGTTCACCTGGCAGGAGCAACATCATGACGCATATTCGGATCGAAGAAGGAACGGGTGGCTGGGGCGGCCCGCTTGAGCTGAAAGCCACGCCGGGAAAAAAAATCGTCTATATCACCGCCGGt > 2:1626927/1‑139 (MQ=255) cAACTTGAACAAAAAGTTCACCTGGCAGGAGCAACATCATGACGCATATTCGGATCGAAGAAGGAACGGGTGGCTGGGGCGGCCCGCTTGAGCTGAAAGCCACGCCGGGAAAAAAAATCGTCTATATCACCGCCGGTAc > 1:239704/1‑139 (MQ=255) gAACAAAAAGTTCACCTGGCAGGAGCAACATCATGACGCATATTCGGATCGAAGAAGGAACGGGTGGCTGGGGCGGCCCGCTTGAGCTGAAAGCCACGCCGGGAAAAAAAATCGTCTATATCACCGCCGGTACCCGGcc > 1:730085/1‑139 (MQ=255) gAACAAAAAGTTCACCTGGCAGGAGCAACATCATGACGCATATTCGGATCGAAAAAGGAACGGGTGGCTGGGGCGGCCCGCTTGAGCTGAAAGCCACGCCGGGAAAAAAAATCGTCTATATCACCGCCGGTACCCg > 2:1562756/1‑136 (MQ=255) gAACAAAAAGTTCACCTGGCAGGAGCAACATCATGACGCATATTCGGATCGAAAAAGGAACGGGTGGCTGGGGCGGCCCGCTTGAGCTGAAAGCCACGCCGGGAAAAAAAATCGTCTATATCACCGCCGGTACCCg < 1:1562756/136‑1 (MQ=255) aaCAAAAAGTTCACCTGGCAGGAGCAACATCATGACGCATATTCGGATCGAAGAAGGAACGGGTGGCTGGGGCGGCCCGCTTGAGCTGAAAGCCACGCCGGGAAAAAAAATCGTCTATATCACCGCCGGTACCCGGCCt > 2:1628661/1‑139 (MQ=255) aaaaGTTCACCTGGCAGGAGCAACATCATGACGCATATTCGGATCGAAGAAGGAACGGGTGGCTGGGGCGGCCCGCTTGAGCTGAAAGCCACGCCGGGAAAAAAAATCGTCTATATCACCGCCGGTACCCGGCCTGCGa < 2:1570843/139‑1 (MQ=255) aaaaGTTCACCTGGCAGGAGCAACATCATGACGCATATTCGGATCGAAGAAGGAACGGGTGGCTGGGGCGGCCCGCTTGAGCTGAAAGCCACGCCGGGAAAAAAAATCGTCTATATCACCGCCGGTACCCGGCCTGCGa < 2:1290744/139‑1 (MQ=255) aaaaGTTCACCTGGCAGGAGCAACATCATGACGCATATTCGGATCGAAGAAGGAACGGGTGGCTGGGGCGGCCCGCTTGAGCTGAAAGCCACGCCGGGAAAAAAAATCGTCTATATCACCGCCGGTACCCGGCCTGCGa < 1:1626927/139‑1 (MQ=255) tCACCTGGCAGGAGCAACATCATGACGCATATTCGGATCGAAGAAGGaa < 1:1317017/49‑1 (MQ=255) tCACCTGGCAGGAGCAACATCATGACGCATATTCGGATCGAAGAAGGaa > 2:1317017/1‑49 (MQ=255) tCACCTGGCAGGAGCAACATCATGACGCATATTCGGATCGAAGAAGGAACGGGTGGCTGGGGCGGCCCGCTTGAGCTGAAAGCCACGCCGGGAAAAAAAATCGTCTATATCACCGCCGGTACCCGGCCTg < 2:108094/130‑1 (MQ=255) tCACCTGGCAGGAGCAACATCATGACGCATATTCGGATCGAAGAAGGAACGGGTGGCTGGGGCGGCCCGCTTGAGCTGAAAGCCACGCCGGGAAAAAAAATCGTCTATATCACCGCCGGTACCCGGCCTg > 1:108094/1‑130 (MQ=255) cACCTGGCAGGAGCAACATCATGACGCATATTCGGATCGAAGAAGGAACGGGTGGCTGGGGCGGCCCGCTTGAGCTGAAAGCCACGCCGGGAAAAAAAATCGTCTatat > 1:1663685/1‑109 (MQ=255) cACCTGGCAGGAGCAACATCATGACGCATATTCGGATCGAAGAAGGAACGGGTGGCTGGGGCGGCCCGCTTGAGCTGAAAGCCACGCCGGGAAAAAAAATCGTCTatat < 2:1663685/109‑1 (MQ=255) cACCTGGCAGGAGCAACATCATGACGCATATTCGGATCGAAGAAGGAACGGGTGGCTGGGGCGGCCCGCTTGAGCTGAAAGCCACGCCGGGAAAAAAAATCGTCTATATCACCGCCGGTACCCGGCCTGCGATTGTTGa < 1:1628661/139‑1 (MQ=255) aCCTGGCAGGAGCAACATCATGACGCATATTCGGATCGAAGAAGGAACGGGTGGCTGGGGCGGCCCGCTTGAGCTGAAAGCCACGCCGGGAAAAAAAATCGTCTATATCACCGCCGGTACCCGGCCTGCGATTGTTGAc > 2:141511/1‑139 (MQ=255) gCAGGAGCAACATCATGACGCATATTCGGATCGAAGAAgg < 2:1703333/40‑1 (MQ=39) gCAGGAGCAACATCATGACGCATATTCGGATCGAAGAAgg > 1:1703333/1‑40 (MQ=255) gCAGGAGCAACATCATGACGCATATTCGGATCGAAGAAGGAACGGGTGGCTGGGGCGGCCCGCTTGAGCTGAAAGCCACGCCGGGAAAAAAAATCGTCTATATCACCGCCGGTACCCGGCCTGCGATTGTTGACAAACt > 1:1031234/1‑139 (MQ=255) cAGGAGCAACATCATGACGCATATTCGGATCGAAGAAGGAACGGGTGGCTGGGGCGGCCCGCtt > 2:1710743/1‑64 (MQ=255) cAGGAGCAACATCATGACGCATATTCGGATCGAAGAAGGAACGGGTGGCTGGGGCGGCCCGCtt < 1:1710743/64‑1 (MQ=255) cAGGAGCAACATCATGACGCATATTCGGATCGAAGAAGGAACGGGTGGCTGGGGCGGCCCGCTTGAGCTGAAAGCCACGcc > 2:2051554/1‑81 (MQ=255) cAGGAGCAACATCATGACGCATATTCGGATCGAAGAAGGAACGGGTGGCTGGGGCGGCCCGCTTGAGCTGAAAGCCACGcc < 1:2051554/81‑1 (MQ=255) ggAGCAACATCATGACGCATATTCGGATCGAAGAAGGAACGGGTGGCTGGGGCGGCCCGCTTGAGCTGAAAGCCACGCCGGGAAAAAAAATCGTCTATATCACCGCCGGTACCCGGCCTGCGATTGTTGACAAACTGGc < 2:730085/139‑1 (MQ=255) gAGCAACATCATGACGCATATTCGGATCGAAGAAGGa > 1:33059/1‑37 (MQ=255) gAGCAACATCATGACGCATATTCGGATCGAAGAAGGa < 2:33059/37‑1 (MQ=255) gAGCAACATCATGACGCATATTCGGATCGAAGAAGGAACGGGTGGCTGGGGCGGCCCGCTTGAGCTGAAAGCCACGCCGGGAAAAAAAATCGTCTATATCACCGCCGGTACCCGGCCTGCGATTGTTGACAAACTGGca < 1:1066078/139‑1 (MQ=255) catcatGACGCATATTCGGATCGAAGAAGGAACGGGTGGCTGGGGCGGCCCGCTTGAGCTGAAAGCCACGCCGGGAAAAAAAATCGTCTATATCa < 2:1149907/95‑1 (MQ=255) catcatGACGCATATTCGGATCGAAGAAGGAACGGGTGGCTGGGGCGGCCCGCTTGAGCTGAAAGCCACGCCGGGAAAAAAAATCGTCTATATCa > 1:1149907/1‑95 (MQ=255) atGACGCATATTCGGATCGAAGAAGGAACGGGTGGCTGGGGCGGCCCGCTTGAGCTGAAAGCCACGCCGGGAAAAAAAATCGTCTATATCACCGCCGGTACCCGGCCTGCGATTGTTGACAAACTGGCACAGCTTActg > 1:1411684/1‑139 (MQ=255) tGACGCATATTCGGATCGAAGAAGGAACGGGTGGCTGGGGCGGCCCGCTTGAGCTGAAAGCCACGCCGGGAAAAAAAATCGTCTATATCACCGCCGGTACCCGGCCTGCGAt < 2:1387274/112‑1 (MQ=255) tGACGCATATTCGGATCGAAGAAGGAACGGGTGGCTGGGGCGGCCCGCTTGAGCTGAAAGCCACGCCGGGAAAAAAAATCGTCTATATCACCGCCGGTACCCGGCCTGCGAt > 1:1387274/1‑112 (MQ=255) cGCATATTCGGATCGAAGAAGGAACGGGTGGCTGGGGCGGCCCGCTTGAGCTGAAAGCCACGCCGGGAAAAAAAATCGTCTATATCAccgcc > 2:964468/1‑92 (MQ=255) cGCATATTCGGATCGAAGAAGGAACGGGTGGCTGGGGCGGCCCGCTTGAGCTGAAAGCCACGCCGGGAAAAAAAATCGTCTATATCAccgcc < 1:964468/92‑1 (MQ=255) cATATTCGGATCGAAGAAGGAACGGGTGGCTGGGGCGGCCCGCTTGAGCTGAAAGCCACGCCGGGAAAAAAAATCGTCTATATCACCGCCGGTACCCGGCCTg > 2:1418328/1‑103 (MQ=255) cATATTCGGATCGAAGAAGGAACGGGTGGCTGGGGCGGCCCGCTTGAGCTGAAAGCCACGCCGGGAAAAAAAATCGTCTATATCACCGCCGGTACCCGGCCTg < 1:1418328/103‑1 (MQ=255) atatTCGGATCGAAGAAGGAACGGGTGGCTGGGGCGGCCCGCTTGAGCTGAAAGCCACGCCGGGaaaaaaaa < 2:1957817/72‑1 (MQ=255) atatTCGGATCGAAGAAGGAACGGGTGGCTGGGGCGGCCCGCTTGAGCTGAAAGCCACGCCGGGaaaaaaaa > 1:1957817/1‑72 (MQ=255) atatTCGGATCGAAGAAGGAACGGGTGGCTGGGGCGGCCCGCTTGAGCTGAAAGCCACGCCGGGAAAAAAAATCGTc > 1:468448/1‑77 (MQ=255) atatTCGGATCGAAGAAGGAACGGGTGGCTGGGGCGGCCCGCTTGAGCTGAAAGCCACGCCGGGAAAAAAAATCGTc < 2:468448/77‑1 (MQ=255) atTCGGATCGAAGAAGGAACGGGTGGCTGGGGCGGCCCGCTTGAGCTGAAAGCCACGCCGGGAAAAAAAATCGTCTATATCACCGCCGGTACCCGGCCTGCGATTGTTGACAAACTGGcac < 1:713943/121‑1 (MQ=255) atTCGGATCGAAGAAGGAACGGGTGGCTGGGGCGGCCCGCTTGAGCTGAAAGCCACGCCGGGAAAAAAAATCGTCTATATCACCGCCGGTACCCGGCCTGCGATTGTTGACAAACTGGcac > 2:713943/1‑121 (MQ=255) atTCGGATCGAAGAAGGAACGGGTGGCTGGGGCGGCCCGCTTGAGCTGAAAGCCACGCCGGGAAAAAAAATCGTCTATATCACCGCCGGTACCCGGCCTGCGATTGTTGACAAACTGGCACAGCTTACTGGCTGGCAgg < 2:1031234/139‑1 (MQ=255) atTCAGATCGAAGAAGGAACGGGTGGCTGGGGCGGCCCGCTTGAGCTGAAAGCCACGCCGGGaaaaaaaa > 1:427233/1‑70 (MQ=255) atTCAGATCGAAGAAGGAACGGGTGGCTGGGGCGGCCCGCTTGAGCTGAAAGCCACGCCGGGaaaaaaaa < 2:427233/70‑1 (MQ=255) aTCGAAGAAGGAACGGGTGGCTGGGGCGGCCCGCTTGAGCTGAAAGCCACGCCGGGAAAAAAAATCGTCTATATCACCGCCGGTACCCGGCCTGCGATTGTTGACAAACTGGca > 2:270164/1‑114 (MQ=255) aTCGAAGAAGGAACGGGTGGCTGGGGCGGCCCGCTTGAGCTGAAAGCCACGCCGGGAAAAAAAATCGTCTATATCACCGCCGGTACCCGGCCTGCGATTGTTGACAAACTGGca < 1:270164/114‑1 (MQ=255) tCGAAGAAGGAACGGGTGGCTGGGGCGGCCCGCTTGAGCTGAAAGCCACGCCGGGAAAAAAAATCGTCTATATCACCGCCGGTACCCGGCCTGCGATTGTTGACAAACTGGCACAGCTTACTGGCTGGCAgg > 2:299118/1‑132 (MQ=255) tCGAAGAAGGAACGGGTGGCTGGGGCGGCCCGCTTGAGCTGAAAGCCACGCCGGGAAAAAAAATCGTCTATATCACCGCCGGTACCCGGCCTGCGATTGTTGACAAACTGGCACAGCTTACTGGCTGGCAgg < 1:299118/132‑1 (MQ=255) tCGAAGAAGGAACGGGTGGCTGGGGCGGCCCGCTTGAGCTGAAAGCCACGCCGGGAAAAAAAATCGTCTATATCACCGCCGGTACCCGGCCTGCGATTGTTGACAAACTGGCACAGCTTACTGGCTGGCAGGCTATTGa < 1:141511/139‑1 (MQ=255) | TCACCAATTTCTTCCGCGGCTGGGTGACCGATCTGACCACCGCCATTTTTGAGAAAAAGATGGGCATTCAACTTGAACAAAAAGTTCACCTGGCAGGAGCAACATCATGACGCATATTCGGATCGAAAAAGGAACGGGTGGCTGGGGCGGCCCGCTTGAGCTGAAAGCCACGCCGGGAAAAAAAATCGTCTATATCACCGCCGGTACCCGGCCTGCGATTGTTGACAAACTGGCACAGCTTACTGGCTGGCAGGCTATTGA > NC_000913/2826286‑2826546 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |