Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 2,979,478 A→G H153R (CAT→CGT)  lysR → transcriptional activator of lysA, autorepressor

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009132,979,4780AG100.0% 406.2 / NA 110H153R (CAT→CGT) lysRtranscriptional activator of lysA, autorepressor
Reads supporting (aligned to +/- strand):  ref base A (0/0);  new base G (51/59);  total (51/59)

Only 100 of 110 total aligned reads displayed.

CGCAGCTCCTGCAACCCTTTCTGGCACGTTATCCCGATGTCAGCTTAAATATCGTGCCCCAGGAATCACCGCTACTTGAAGAGTGGCTCTCGGCCCAGCGTCATGATTTAGGACTCACTGAAACGCTCCATACGCCTGCGGGAACAGAACGTACCGAATTACTCTCTTTAGATGAAGTGTGTGTGTTACCTCCGGGTCATCCGCTGGCGGTAAAAAAGGTATTAACGCCGGATGATTTTCAGGGTGAGAACTACATCAGCCT  >  NC_000913/2979349‑2979610
                                                                                                                                 |                                                                                                                                    
cGCAGCTCCTGCAACCCTTTCTGGCACGTTATCCCGATGTCAGCTTAAATATCGTGCCCCAGGAATCACCGCTACTTGAAGAGTGGCTCTCGGCCCAGCGTCATGATTTAGGACTCACTGAAACGCTCCGTACGCCTGc                                                                                                                             <  2:1680299/139‑1 (MQ=255)
  cAGCTCCTGCAACCCTTTCTGGCACGTTATCCCGATGTCAGCTTAAATATCGTGCCCCAGGAATCACCGCTACTTGAAGAGTGGCTCTCGGCCCAGCGTCATGATTTAGGACTCACTGAAACGCTCCGTACGCCTGCgg                                                                                                                           >  1:127284/1‑139 (MQ=255)
    gCTCCTGC‑ACCCTTTCTGGCACGTTATCCCGATGTCAGCTTAAATATCGTGCCCCAGGAATCACCGCTACTTGAAGAGTGGCTCTCGGCCCAGCGTCATGATTTAGGACTCACTGAAACGCTCCGTACGCCTGCGGGaa                                                                                                                        <  2:1951511/139‑1 (MQ=255)
        cTGCAACCCTTTCTGGCACGTTATCCCGATGTCAGCTTAAATATCGTGCCCCAGGAATCACCGCTACTTGAAGAGTGGCTCTCGGCCCAGCGTCATGATTTAGGACTCACTGAAACGCTCCGTACGCCTGCGGGAACAg                                                                                                                     >  2:755991/1‑139 (MQ=255)
          gCAACCCTTTCTGGCACGTTATCCCGATGTCAGCTTAAATATCGTGCCCCAGGAATCACCGCTACTTGAAGAGTGGCTCTCGGCCCAGCGTCATGATTTAGGACTCACTGAAACGCTCCGTACGCCTGCGGGAACAGaa                                                                                                                   <  1:1626035/139‑1 (MQ=255)
             aCCCTTTCTGGCACGTTATCCCGATGTCAGCTTAAATATCGTGCCCCAGGAATCACCGCTACTTGAAGAGTGGCTCTCGGCCCAGCGTCATGATTTAGGACTCACTGAAACGCTCCGTACg                                                                                                                                  >  2:892981/1‑121 (MQ=255)
             aCCCTTTCTGGCACGTTATCCCGATGTCAGCTTAAATATCGTGCCCCAGGAATCACCGCTACTTGAAGAGTGGCTCTCGGCCCAGCGTCATGATTTAGGACTCACTGAAACGCTCCGTACg                                                                                                                                  <  1:892981/121‑1 (MQ=255)
                      ggCACGTTATCCCGATGTCAGCTTAAATATCGTGCCCCAGGAATCACCGCTACTTGAAGAGTGGCTCTCGGCCCAGCGTCATGATTTAGGACTCACTGAAACGCTCCGTACGCCTGCGGGAACAGAACGTACCGACTTa                                                                                                       <  1:529400/139‑1 (MQ=255)
                       gCACGTTATCCCGATGTCAGCTTAAATATCGTGCCCCAGGAATCACCGCTACTTGAAGAGTGGCTCTCGGCCCAGCGTCATGATTTAGGACTCACTGAAACGCTCCGTACGCCTGCGGGAACAGAACGTACCGAATTAc                                                                                                      <  1:1120138/139‑1 (MQ=255)
                         aCGTTATCCCGATGTCAGCTTAAATATCGTGCCCCAGGAATCACCGCTACTTGAAGAGTGGCTCTCGGCCCAGCGTCATGATTTAGGACTCACTGAAACGCTCCGTACGCCTGCGGGAACAGAACGTACCGAATTActc                                                                                                    >  1:1490421/1‑139 (MQ=255)
                             tATCCCGATGTCAGCTTAAATATCGTGCCCCAGGAATCACCGCTACTTGAAGAGTGGCTCTTGGCCCAGCGTCATGATTTAGGACTCACTGAAACGCTCCGTACGCCTGCGGGAACAGAACGTACCGaa                                                                                                          >  1:82831/1‑129 (MQ=255)
                             tATCCCGATGTCAGCTTAAATATCGTGCCCCAGGAATCACCGCTACTTGAAGAGTGGCTCTTGGCCCAGCGTCATGATTTAGGACTCACTGAAACGCTCCGTACGCCTGCGGGAACAGAACGTACCGaa                                                                                                          <  2:82831/129‑1 (MQ=255)
                             tATCCCGATGTCAGCTTAAATATCGTGCCCCAGGAATCACCGCTACTTGAAGAGTGGCTCTCGGCCCAGCGTCATGATTTAGGACTCACTGAAACGCTCCGTACGCCTGCGGGAACAGAACGTACCGAATTACTCTCtt                                                                                                >  2:1197129/1‑139 (MQ=255)
                              aTCCCGATGTCAGCTTAAATATCGTGCCCCAGGAATCACCGCTACTTGAAGAGTGGCTCTCGGCCCAGCGTCATGATTTAGGACTCACTGAAACGCTCCGTACGCCTg                                                                                                                              <  1:583258/108‑1 (MQ=255)
                              aTCCCGATGTCAGCTTAAATATCGTGCCCCAGGAATCACCGCTACTTGAAGAGTGGCTCTCGGCCCAGCGTCATGATTTAGGACTCACTGAAACGCTCCGTACGCCTg                                                                                                                              >  2:583258/1‑108 (MQ=255)
                                 ccGATGTCAGCTTAAATATCGTGCCCCAGGAATCACCGCTACTTGAAGAGTGGCTCTCGGCCCAGCGTCATGATTTAGGACTCACTGAAACGCTCCGTACGCCTGCGGGAACAGAACGTACCGAATTACTCTCTTTAGa                                                                                            >  2:242128/1‑139 (MQ=255)
                                     tGTCAGCTTAAATATCGTGCCCCAGGAATCACCGCTACTTGAAGAGTGGCTCTCGGCCCAGCGTCATGATTTAGGACTCACTGAAACGCTCCGTACGCCTGCGGGAACAGAACGTACCGAATTACTCTCTTTAGATGaa                                                                                        <  2:423500/139‑1 (MQ=255)
                                     tGTCAGCTTAAATATCGTGCCCCAGGAATCACCGCTACTTGAAGAGTGGCTCTCGGCCCAGAGTCATGATTTAGGACTCACTGAAACGCTCCGTACGCCTGCGGGAACAGAACGTACCGAATTACTCTCTTTAGATGaa                                                                                        <  2:1268911/139‑1 (MQ=255)
                                        cAGCTTAAATATCGTGCCCCAGGAATCACCGCTACTTGAAGAGTGGCTCTCGGCCCAGCGTCATGATTTAGGACTCACTGAAACGCTCCGTACGCCTGCGGGAACAGAACGTACCGAATTACTCTCTTTAGATGAAgtg                                                                                     <  1:755991/139‑1 (MQ=255)
                                         aGCTTAAATATCGTGCCCCAGGAATCACCGCTACTTGAAGAGTGGCTCTCGGCCCAGCGTCATGATTTAGGACTCACTGAAACGCTCCGTACGCCTGc                                                                                                                             >  2:1584508/1‑98 (MQ=255)
                                         aGCTTAAATATCGTGCCCCAGGAATCACCGCTACTTGAAGAGTGGCTCTCGGCCCAGCGTCATGATTTAGGACTCACTGAAACGCTCCGTACGCCTGc                                                                                                                             <  1:1584508/98‑1 (MQ=255)
                                              aaaTATCGTGCCCCAGGAATCACCGCTACTTGAAGAGTGGCTCTCGGCCCAGCGTCATGATTTAGGACTCACTGAAACGCTCCGTACGCCTGCGGGAACAGAACGTACCGAATTACTCTCTTTAGATGAAgtgtgtgtg                                                                               <  2:867866/139‑1 (MQ=255)
                                               aaTATCGTGCCCCAGGAATCACCGCTACTTGAAGAGTGGCTCTCGGCCCAGCGTCATGATTTAGGACTCACTGAAACGCTCCGTACGCCTGCGGGAACAGAACGTACCGAATTACTCTCTTTAGATGAAgtgtgtgtgt                                                                              <  2:405842/139‑1 (MQ=255)
                                                    cGTGCCCCAGGAATCACCGCTGCTTGAAGAGTGGCTCTCGGCCCAGCGTCATGATTTAGGACTCACTGATACGCTCCGTACGCCTGCGGGAACAGAACGTACCGAATTACTCTCTTTAGATGAAGTGTGTGTGTCACCt                                                                         <  1:1197129/139‑1 (MQ=255)
                                                    cGTGCCCCAGGAATCACCGCTACTTGAAGAGTGGCTCTCGGCCCAGCGTCATGATTTAGGACTCACTGAAACGCTCCGTACGCCTGCGGGAACAGAACGTACCGAATTACTCTCTTTAGATGAAGTGTGTGTGTTACCt                                                                         >  2:1758528/1‑139 (MQ=255)
                                                     gTGCCCCAGGAATCACCGCTACTTGAAGAGTGGCTCTCGGTCCAGCGTCATGATTTAGGACTCACTGAAACGCTCCGTACGCCTGCGGGAACAGa                                                                                                                    >  2:1254362/1‑95 (MQ=255)
                                                     gTGCCCCAGGAATCACCGCTACTTGAAGAGTGGCTCTCGGCCCAGCGTCATGATTTAGGACTCACTGAAACGCTCCGTACg                                                                                                                                  >  1:1852605/1‑81 (MQ=255)
                                                     gTGCCCCAGGAATCACCGCTACTTGAAGAGTGGCTCTCGGCCCAGCGTCATGATTTAGGACTCACTGAAACGCTCCGTACg                                                                                                                                  <  2:1852605/81‑1 (MQ=255)
                                                     gTGCCCCAGGAATCACCGCTACTTGAAGAGTGGCTCTCGGCCCAGCGTCATGATTTAGGACTCACTGAAACGCTCCGTACGCCTGc                                                                                                                             <  1:22943/86‑1 (MQ=255)
                                                     gTGCCCCAGGAATCACCGCTACTTGAAGAGTGGCTCTCGGCCCAGCGTCATGATTTAGGACTCACTGAAACGCTCCGTACGCCTGc                                                                                                                             <  1:319108/86‑1 (MQ=255)
                                                     gTGCCCCAGGAATCACCGCTACTTGAAGAGTGGCTCTCGGCCCAGCGTCATGATTTAGGACTCACTGAAACGCTCCGTACGCCTGc                                                                                                                             >  2:22943/1‑86 (MQ=255)
                                                     gTGCCCCAGGAATCACCGCTACTTGAAGAGTGGCTCTCGGCCCAGCGTCATGATTTAGGACTCACTGAAACGCTCCGTACGCCTGc                                                                                                                             >  2:319108/1‑86 (MQ=255)
                                                     gTGCCCCAGGAATCACCGCTACTTGAAGAGTGGCTCTCGGCCCAGCGTCATGATTTAGGACTCACTGAAACGCTCCGTACGCCTGCGGGAACAGa                                                                                                                    <  1:1254362/95‑1 (MQ=255)
                                                     gTGCCCCAGGAATCACCGCTACTTGAAGAGTGGCTCTCGGCCCAGCGTCATGATTTAGGACTCACTGAAACGCTCCGTACGCCTGCGGGAACAGAACGTACCGAATTACTCTCTTTAGATGAAgtgtgtgtgt                                                                              <  2:1335483/133‑1 (MQ=255)
                                                     gTGCCCCAGGAATCACCGCTACTTGAAGAGTGGCTCTCGGCCCAGCGTCATGATTTAGGACTCACTGAAACGCTCCGTACGCCTGCGGGAACAGAACGTACCGAATTACTCTCTTTAGATGAAgtgtgtgtgt                                                                              >  1:1335483/1‑133 (MQ=255)
                                                     gTGCCCCAGGAATCACCGCTACTTGAAGAGTGGCTCTCGGCCCAGCGTCATGATTTAGGACTCACTGAAACGCTCCGTACGCCTGCGGGAACAGAACGTACCGAATTACTCTCTTTAGATGAAg                                                                                       >  2:1323527/1‑124 (MQ=255)
                                                     gTGCCCCAGGAATCACCGCTACTTGAAGAGTGGCTCTCGGCCCAGCGTCATGATTTAGGACTCACTGAAACGCTCCGTACGCCTGCGGGAACAGAACGTACCGAATTACTCTCTTTAGATGAAg                                                                                       <  1:1323527/124‑1 (MQ=255)
                                                      tGCCCCAGGAATCACCGCTACTTGAAGAGTGGCTCTCGGCCCAGCGTCATGATTTAGGACTCACTGAAACGCTCCGTACGCCTGc                                                                                                                             >  1:454689/1‑85 (MQ=255)
                                                      tGCCCCAGGAATCACCGCTACTTGAAGAGTGGCTCTCGGCCCAGCGTCATGATTTAGGACTCACTGAAACGCTCCGTACGCCTGc                                                                                                                             <  2:454689/85‑1 (MQ=255)
                                                      tGCCCCAGGAATCACCGCTACTTGAAGAGTGGCTCTCGGCCCAGCGTCATGATTTAGGACTCACTGAAACGCTCCGTACGCCTGCGGGAACAGAACg                                                                                                                 <  1:979768/97‑1 (MQ=255)
                                                      tGCCCCAGGAATCACCGCTACTTGAAGAGTGGCTCTCGGCCCAGCGTCATGATTTAGGACTCACTGAAACGCTCCGTACGCCTGCGGGAACAGAACGTACCGAATTAct                                                                                                     <  2:810732/109‑1 (MQ=255)
                                                      tGCCCCAGGAATCACCGCTACTTGAAGAGTGGCTCTCGGCCCAGCGTCATGATTTAGGACTCACTGAAACGCTCCGTACGCCTGCGGGAACAGAACGTACCGAATTAct                                                                                                     >  1:810732/1‑109 (MQ=255)
                                                        ccccAGGAATCACCGCTACTTGAAGAGTGGCTCTCGGCCCAGCGTCATGATTTAGGACTCACTGAAACGCTCCGTACGCCTGCGGGAACAGAACGTACCGAATTACTCTCTTTAGATGAAGTGTGTGTGTTACCTCCgg                                                                     >  2:1413482/1‑139 (MQ=255)
                                                             ggAATCACCGCTACTTGAAGAGTGGCTCTCGGCCCAGCGTCATGATTTAGGACTCACTGAAACGCTCCGTACGCCTGCGGGAACAGAACGTACCGAATTActctc                                                                                                  <  1:1067817/105‑1 (MQ=255)
                                                             ggAATCACCGCTACTTGAAGAGTGGCTCTCGGCCCAGCGTCATGATTTAGGACTCACTGAAACGCTCCGTACGCCTGCGGGAACAGAACGTACCGAATTActctc                                                                                                  >  2:1067817/1‑105 (MQ=255)
                                                                aTCACCGCTACTTGAAGAGTGGCTCTCGGCCCAGCGTCATGATTTAGGACTCACTGAAACGCTCCGTACGCCTGCGGGAACAGAACGTACCGAATTACTCTCTTTAGATGAAGTGTGTGTGTTACCTCCGGGTCATCCg                                                             <  2:127284/139‑1 (MQ=255)
                                                                  cACCGCTACTTGAAGAGTGGCTCTCGGCCCAGCGTCATGATTTAGGACTCACTGAAACGCTCCGTACGCCTGCGGGAACAGAACGTACCGAATTACTCTCTTTAGATGAAGTGTGTGTGTTACCTCCGGGTCATCCGCt                                                           <  1:1758528/139‑1 (MQ=255)
                                                                  cACCGCTACTTGAAGAGTGGCTCTCGGCCCAGCGTCATGATTTAGGACTCACTGAAACGCTCCGTACGCCTGCGGGAACAGAACGTACCGAATTACTCTCTTTAGATGAAGTGTGTGTGTTACCTCCGGGTCATCCGCt                                                           <  1:1413482/139‑1 (MQ=255)
                                                                   aCCGCTACTTGAAGAGTGGCTCTCGGCCCAGCGTCATGATTTAGGACTCACTGAAACGCTCCGTACGCCTGCGGGa                                                                                                                         <  2:704502/76‑1 (MQ=255)
                                                                   aCCGCTACTTGAAGAGTGGCTCTCGGCCCAGCGTCATGATTTAGGACTCACTGAAACGCTCCGTACGCCTGCGGGa                                                                                                                         <  2:20616/76‑1 (MQ=255)
                                                                   aCCGCTACTTGAAGAGTGGCTCTCGGCCCAGCGTCATGATTTAGGACTCACTGAAACGCTCCGTACGCCTGCGGGa                                                                                                                         >  1:20616/1‑76 (MQ=255)
                                                                   aCCGCTACTTGAAGAGTGGCTCTCGGCCCAGCGTCATGATTTAGGACTCACTGAAACGCTCCGTACGCCTGCGGGAACAGAACGTACCGAATTACTCTCTTTAGATGAAGTGTGTGTGTTACCTCCGGGTCATCCGCTg                                                          >  2:1783344/1‑139 (MQ=255)
                                                                     cGCTACTTGAAGAGTGGCTCTCGGCCCAGCGTCATGATTTAGGACTCACTGAAACGCTCCGTACg                                                                                                                                  >  1:1772583/1‑65 (MQ=255)
                                                                     cGCTACTTGAAGAGTGGCTCTCGGCCCAGCGTCATGATTTAGGACTCACTGAAACGCTCCGTACg                                                                                                                                  <  2:1772583/65‑1 (MQ=255)
                                                                     cGCTACTTGAAGAGTGGCTCTCGGCCCAGCGTCATGATTTAGGACTCACTGAAACGCTCCGTACGCCTGCGGGAACAGAACGTACCGAATTACTCTCTTTAGATGAAGTGTGTGTGTTACCTCCGGGTCATCCGCt                                                           >  2:1784758/1‑136 (MQ=255)
                                                                     cGCTACTTGAAGAGTGGCTCTCGGCCCAGCGTCATGATTTAGGACTCACTGAAACGCTCCGTACGCCTGCGGGAACAGAACGTACCGAATTACTCTCTTTAGATGAAGTGTGTGTGTTACCTCCGGGTCATCCGCt                                                           <  1:1784758/136‑1 (MQ=255)
                                                                       cTACTTGAAGAGTGGCTCTCGGCCCAGCGTCATGATTTAGGACTCACTGAAACGCTCCGTACGCCTGCGGGaa                                                                                                                        >  2:2015830/1‑73 (MQ=255)
                                                                       cTACTTGAAGAGTGGCTCTCGGCCCAGCGTCATGATTTAGGACTCACTGAAACGCTCCGTACGCCTGCGGGaa                                                                                                                        <  1:2015830/73‑1 (MQ=255)
                                                                               agagTGGCTCTCGGCCCAGCGTCATGATTTAGGACTCACTGAAACGCTCCGTACGCCTGCGGGAACAGAACGTa                                                                                                               >  2:470943/1‑74 (MQ=255)
                                                                               agagTGGCTCTCGGCCCAGCGTCATGATTTAGGACTCACTGAAACGCTCCGTACGCCTGCGGGAACAGAACGTa                                                                                                               <  1:470943/74‑1 (MQ=255)
                                                                                  gTGGCTCTCGGCCCAGCGTCATGATTTAGGACTCACTGAAACGCTCCGTACGCCTGCGGGAACAGAACGTa                                                                                                               <  1:1717876/71‑1 (MQ=255)
                                                                                  gTGGCTCTCGGCCCAGCGTCATGATTTAGGACTCACTGAAACGCTCCGTACGCCTGCGGGAACAGAACGTa                                                                                                               >  2:1717876/1‑71 (MQ=255)
                                                                                    ggCTCTCGGCCCAGCGTCATGATTTAGGACTCACTGAAACGCTCCGTACGcc                                                                                                                                >  1:921040/1‑52 (MQ=255)
                                                                                    ggCTCTCGGCCCAGCGTCATGATTTAGGACTCACTGAAACGCTCCGTACGcc                                                                                                                                <  2:921040/52‑1 (MQ=255)
                                                                                    ggCTCTCGGCCCAGCGTCATGATTTAGGACTCACTGAAACGCTCCGTACGCCTGCGGGAACAGAACGTACCGAATTACTCTCTTTAGATGaa                                                                                        <  2:93247/92‑1 (MQ=255)
                                                                                    ggCTCTCGGCCCAGCGTCATGATTTAGGACTCACTGAAACGCTCCGTACGCCTGCGGGAACAGAACGTACCGAATTACTCTCTTTAGATGaa                                                                                        >  1:93247/1‑92 (MQ=255)
                                                                                    ggCTCTCGGCCCAGCGTCATGATTTAGGACTCACTGAAACGCTCCGTACGCCTGCGGGAACAGAACGTACCGAATTACTCTCTTTAGATGAAgtgtgtgtgt                                                                              <  2:1420504/102‑1 (MQ=255)
                                                                                     gCTCTCGGCCCAGCGTCATGATTTAGGACTCACTGAAACGCTCCGTACGCCTGCGGGAACAGAACGTACCGAATTAct                                                                                                     >  1:402529/1‑78 (MQ=255)
                                                                                     gCTCTCGGCCCAGCGTCATGATTTAGGACTCACTGAAACGCTCCGTACGCCTGCGGGAACAGAACGTACCGAATTAct                                                                                                     <  2:402529/78‑1 (MQ=255)
                                                                                     gCTCTCGGCCCAGCGTCATGATTTAGGACTCACTGAAACGCTCCGTACGCCTGCGGGAACAGAACGTACCGAATTACTCTCTTTAGATGAAGTGTGTGTGTTACCTcc                                                                       <  1:239632/108‑1 (MQ=255)
                                                                                     gCTCTCGGCCCAGCGTCATGATTTAGGACTCACTGAAACGCTCCGTACGCCTGCGGGAACAGAACGTACCGAATTACTCTCTTTAGATGAAGTGTGTGTGTTACCTcc                                                                       >  2:239632/1‑108 (MQ=255)
                                                                                        ctcGGCCCAGCGTCATGATTTAGGACTCACTGAAACGCTCCGTACg                                                                                                                                  >  2:1691188/1‑46 (MQ=255)
                                                                                        ctcGGCCCAGCGTCATGATTTAGGACTCACTGAAACGCTCCGTACg                                                                                                                                  <  1:1691188/46‑1 (MQ=255)
                                                                                         tcGGCCCAGCGTCATGATTTAGGACTCACTGAAACGCTCCGTACGCCTGCGGGAACAGAACGTACCGAATTACTCTCTTTAGATGAAGTGTGTGTGTTACCTCCGGGTCATCCGCTGGCGGTAAAAAAGGTATTAACGc                                    >  2:1918380/1‑139 (MQ=255)
                                                                                           ggCCCAGCGTCATGATTTAGGACTCACTGAAACGCTCCGTACGCCTGc                                                                                                                             <  1:397591/48‑1 (MQ=255)
                                                                                           ggCCCAGCGTCATGATTTAGGACTCACTGAAACGCTCCGTACGCCTGc                                                                                                                             >  2:397591/1‑48 (MQ=255)
                                                                                           ggCCCAGCGTCATGATTTAGGACTCACTGAAACGCTCCGTACGCCTGCGGGAACAGaa                                                                                                                   >  2:1191613/1‑58 (MQ=255)
                                                                                           ggCCCAGCGTCATGATTTAGGACTCACTGAAACGCTCCGTACGCCTGCGGGAACAGaa                                                                                                                   <  1:1191613/58‑1 (MQ=255)
                                                                                           ggCCCAGCGTCATGATTTAGGACTCACTGAAACGCTCCGTACGCCTGCGGGAACAGAACGTACCGAATTACTCTCTTTAGATGAAGTGTGTGTGTTACCTCCGGGTCATCCGCTGGCGGTaaa                                                  <  2:2046687/123‑1 (MQ=255)
                                                                                           ggCCCAGCGTCATGATTTAGGACTCACTGAAACGCTCCGTACGCCTGCGGGAACAGAACGTACCGAATTACTCTCTTTAGATGAAGTGTGTGTGTTACCTCCGGGTCATCCGCTGGCGGTaaa                                                  >  1:2046687/1‑123 (MQ=255)
                                                                                           ggCCCAGCGTCATGATTTAGGACTCACTGAAACGCTCCGTACGCCTGCGGGAACAGAACGTACCGAATTACTCTCTTTAGATGAAGTGTGTGTGTTACCTCCGGGTCATCCGCTGGCGGTAAAAAAGGTATTAACGcc                                   >  1:698619/1‑138 (MQ=255)
                                                                                             cccAGCGTCATGATTTAGGACTCACTGAAACGCTCCGTACGCCTGCGGGAACAGAACGTACCGAATTACTCTCTTTAGATGAAGTGTGTGTGTTACCTCCGGGTCATCCGCTGGCGGTAAAAAAGGTATTAACGCCGga                                >  1:326790/1‑139 (MQ=255)
                                                                                              ccAGCGTCATGATTTAGGACTCACTGAAACGCTCCGTACGCCTGCGGGAACAGAACGTACCGAATTACTCTCTTTAGATGAAGTGTGTGTGTTACCTCCGGGTCATCCGCTGGCGGTAAAAAAGGTATTAACGCCGgat                               <  1:1918380/139‑1 (MQ=255)
                                                                                                aGCGTCATGATTTAGGACTCACTGAAACGCTCCGTACGCCTGCGGGAACAGAACGTACCGAATTACTCTCTTTAGATGAAgtg                                                                                     >  1:1915190/1‑83 (MQ=255)
                                                                                                aGCGTCATGATTTAGGACTCACTGAAACGCTCCGTACGCCTGCGGGAACAGAACGTACCGAATTACTCTCTTTAGATGAAGTGTGTGTGTTACCTCCGGGTCATCCGCTGGCGGTAAAAAAGGTATTAACGCCGgatga                             >  1:856264/1‑139 (MQ=255)
                                                                                                aGCGTCATGATTTAGGACTCACTGAAACGCTCCGTACGCCTGCGGGAACAGAACGTACCGAATTACTCTCTTTAGATGAAGTGTGTGTGTTACCTCCGGGTCATCCGCTGGCGGTAAAAAAGGTATTAACGCCGgatga                             >  1:1385919/1‑139 (MQ=255)
                                                                                                  cGTCATGATTTAGGACTCACTGAAACGCTCCGTACGCCTGCGGGAACAGAACGTACCGAATTACTCTCTTTAGATGAAGTGTGTGTGTTACCTCCggg                                                                    <  2:2034750/98‑1 (MQ=255)
                                                                                                  cGTCATGATTTAGGACTCACTGAAACGCTCCGTACGCCTGCGGGAACAGAACGTACCGAATTACTCTCTTTAGATGAAGTGTGTGTGTTACCTCCggg                                                                    >  1:2034750/1‑98 (MQ=255)
                                                                                                          tttAGGACTCACTGAAACGCTCCGTACGCCTGCGGGAACAGAACGTACCGAATTACTCTCTTTAGATGAAGTGTGTGTGTTACCTCCGGGTCATCCGCTGGCGGTAAAAAAGGTATTAACGCCGGATGATTTTCAGGGt                   <  2:326790/139‑1 (MQ=255)
                                                                                                                  tCACTGAAACGCTCCGTACGCCTGCGGGAACAGAACGTACCGAATTACTCTCTTTAGATGAAGTGTGTGTGTTACCTCCGGGTCATCCGCTGGCGGTaa                                                   <  2:1958273/99‑1 (MQ=255)
                                                                                                                  tCACTGAAACGCTCCGTACGCCTGCGGGAACAGAACGTACCGAATTACTCTCTTTAGATGAAGTGTGTGTGTTACCTCCGGGTCATCCGCTGGCGGTaa                                                   >  1:1958273/1‑99 (MQ=255)
                                                                                                                   cACTGAAAGGCTCCGTACGCCTGCGGGAACAGAACGTACCGAATTACTCTCTTTAGATGAAGTGTGTGTGTTACCTCCGGGTCATCCGCTGGCGGTAAAAAAGGTATTAACGCCGGATGATTTTCAGGGTGAGAACTAc          >  1:198250/1‑139 (MQ=255)
                                                                                                                    aCTGAAACGCTCCGTACGCCTGCGGGAACAGAACGTACCGAATTACTCTCtt                                                                                                <  2:1868228/52‑1 (MQ=255)
                                                                                                                    aCTGAAACGCTCCGTACGCCTGCGGGAACAGAACGTACCGAATTACTCTCTTTAGATGAAGTGTGTGTGTTACCTCCGGGTCATCCGCTGGCGGTaaaaaa                                               >  2:777886/1‑101 (MQ=255)
                                                                                                                    aCTGAAACGCTCCGTACGCCTGCGGGAACAGAACGTACCGAATTACTCTCTTTAGATGAAGTGTGTGTGTTACCTCCGGGTCATCCGCTGGCGGTaaaaaa                                               <  1:777886/101‑1 (MQ=255)
                                                                                                                    aCTGAAACGCTCCGTACGCCTGCGGGAACAGAACGTACCGAATTACTCTCTTTAGATGAAGTGTGTGTGTTACCTCCGGGTCATCCGCTGGCGGTAAAAAAGGTATTAACGCCGGATGATTTTCAGGGTGAGAACTACa         <  1:1783344/139‑1 (MQ=255)
                                                                                                                    aCTGAAACGCTCCGTACGCCTGCGGGAACAGAACGTACCGAATTACTCTCTTTAGATGAAGTGTGTGTGTTACCTCCGGGTCATCCGCTGGCGGTAAAAAAGGTATTAACGCCGGATGATTTTCAGGGTGAGAACTACa         >  1:808726/1‑139 (MQ=255)
                                                                                                                         aaCGCTCCGTACGCCTGCGGGAACAGAACGTACCGAATTACTCTCTTTAGATGAAGTGTGTGTGTTACCTCCGGGTCATCCGCTGGCGGTAAAAAAGGTATTAACGCCGGATGATTTTCAGGGTGAGAACTACATCAGc    <  2:808726/139‑1 (MQ=255)
                                                                                                                              tCCGTACGCCTGCGGGAACAGAACGTACCGAATTACTCTCTTTAGATGAAgtgtg                                                                                   <  2:45337/55‑1 (MQ=255)
                                                                                                                              tCCGTACGCCTGCGGGAACAGAACGTACCGAATTACTCTCTTTAGATGAAgtgtg                                                                                   >  1:45337/1‑55 (MQ=255)
                                                                                                                                 |                                                                                                                                    
CGCAGCTCCTGCAACCCTTTCTGGCACGTTATCCCGATGTCAGCTTAAATATCGTGCCCCAGGAATCACCGCTACTTGAAGAGTGGCTCTCGGCCCAGCGTCATGATTTAGGACTCACTGAAACGCTCCATACGCCTGCGGGAACAGAACGTACCGAATTACTCTCTTTAGATGAAGTGTGTGTGTTACCTCCGGGTCATCCGCTGGCGGTAAAAAAGGTATTAACGCCGGATGATTTTCAGGGTGAGAACTACATCAGCCT  >  NC_000913/2979349‑2979610

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑