Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 4,105,571 C→T G34R (GGG→AGG)  cpxR ← response regulator in two‑component regulatory system with CpxA

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009134,105,5710CT100.0% 296.9 / NA 90G34R (GGG→AGG) cpxRresponse regulator in two‑component regulatory system with CpxA
Reads supporting (aligned to +/- strand):  ref base C (0/0);  new base T (44/46);  total (44/46)

GTCAACATAATGACAGGCGTCTGGTGTGTCTGGCGAAGTGCTTTTAATGTGTCGATACCATTTTTCTTCGGCATCATTACGTCAAGCAAAAGTAAATCAATGCTGTCGTCCAGAAGATCAAGCGCCTGTTCCCCATCGTGGGCAACAATCACGTTGAAGCCTTCCATCTCGAGCAGCTCCTTTAATAGGGAAGTCAGCTCTCGGTCATCATCAACTAACAGGATTTTATTCATTGTTTAAATACCTCCGAGGCAGAAATTACGTCAT  >  NC_000913/4105438‑4105704
                                                                                                                                     |                                                                                                                                     
gTCAACATAATGACAGGCGTCTGGTGTGTCTGGCGAAGTGCTTTTAATGTGTCGATACCATTTTTCTTCGGCATCATTACGTCAAGCAAAAGTAAATCAATGCTGTCGTCCAGAAGATCAAGCGCCTGTTCCCTATCGt                                                                                                                                  <  1:1628491/139‑1 (MQ=255)
      aTAATGACAGGCGTCTGGTGTGTCTGGCGAAGTGCTTTTAATGTGTCGATACCATTTTTCTTCGGCATCATTACGTCAAGCAAAAGTAAATCAATGCTGTCGTCCAGAAGATCAAGCGCCTGTTCCCTATCGTGGGcaa                                                                                                                            <  2:588317/139‑1 (MQ=255)
                gCGTCTGGTGTGTCTGGCGAAGTGCTTTTAATGTGTCGATACCATTTTTCTTCGGCATCATTACGTCAAGCAAAAGTAAATCAATGCTGTCGTCCAGAAGATCAAGCGCCTGTTCCCTATCGTGGGCAACAATCACGtt                                                                                                                  >  2:474542/1‑139 (MQ=255)
                                    aGTGCTTTTAATGTGTCGATACCATTTTTCTTCGGCATCATTACGTCAAGCAAAAGTAAATCAATGCTGTCGTCCAGAAGATCAAGCGCCTGTTCCCTATCGTGGGCAACAATCACGTTGAAGCCTTCCATCTCGagca                                                                                              <  1:324457/139‑1 (MQ=255)
                                    aGTGCTTTTAATGTGTCGATACCATTTTTCTTCGGCATCATTACGTCAAGCAAAAGTAAATCAATGCTGTCGTCCAGAAGATCAAGCGCCTGTTCCCTATCGTGGGCAACAATCACGTTGAAGCCTTCCATCTCGagca                                                                                              <  1:474542/139‑1 (MQ=255)
                                      tGCTTTTAATGTGTCGATACCATTTTTCTTCGGCATCATTACGTCAAGCAAAAGTAAATCAATGCTGTCGTCCAGAAGATCAAGCGCCTGTTCCCTATCGTGGGCAACAATCACGTTGAAGCCTTCCATCTCGagcagc                                                                                            >  1:950782/1‑139 (MQ=255)
                                      tGCTTTTAATGTGTCGATACCATTTTTCTTCGGCATCATTACGTCAAGCAAAAGTAAATCAATGCTGTCGTCCAGAAGATCAAGCGCCTGTTCCCTATCGTGGGCAACAATCACGTTGAAGCCTTCCATCTCGagcagc                                                                                            >  2:1698974/1‑139 (MQ=255)
                                      tGCTTTTAATGTGTCGATACCATTTTTCTTCGGCATCATTACGTCAAGCAAAAGTAAATCAATGCTGTCGTCCAGAAGATCAAGCGCCTGTTCCCTATCGTGGGCAACAATCACGTTGAAGCCTTCCATCTCGagcagc                                                                                            >  2:1897276/1‑139 (MQ=255)
                                      tGCTTTTAATGTGTCGATACCATTTTTCTTCGGCATCATTACGTCAAGCAAAAGTAAATCAATGCTGTCGTCCAGAAGATCAAGCGCCTGTTCCCTATCGTGGGCAACAATCACGTTGAAGCCTTCCATCTCGagcagc                                                                                            <  1:1897276/139‑1 (MQ=255)
                                          tttAATGTGTCGATACCATTTTTCTTCGGCATCATTACGTCAAGCAAAAGTAAATCAATGCTGTCGTCCAGAAGATCAAGCGCCTGTTCCCTATCGTGGGCAACAATCACGTTGAAGCCTTCCATCTCGagca                                                                                              <  1:1827961/133‑1 (MQ=255)
                                          tttAATGTGTCGATACCATTTTTCTTCGGCATCATTACGTCAAGCAAAAGTAAATCAATGCTGTCGTCCAGAAGATCAAGCGCCTGTTCCCTATCGTGGGCAACAATCACGTTGAAGCCTTCCATCTCGagca                                                                                              >  2:1827961/1‑133 (MQ=255)
                                              aTGTGTCGATACCATTTTTCTTCGGCATCATTACGTCAAGCAAAAGTAAATCAATGCTGTCGTCCAGAAGATCAAGCGCCTGTTCCCTATCGTGGGCAACAATCACGTTGAAGCCTTCCATCTCGAGCAGCTCCTTTaa                                                                                    >  2:311818/1‑139 (MQ=255)
                                                  gtCGATACCATTTTTCTTCGGCATCATTACGTCAAGCAAAAGTAAATCAATGCTGTCGTCCAGAAGATCAAGCGCCTGTTCCCTATCGTGGGCAACAATCACGTTGaa                                                                                                               <  1:496819/108‑1 (MQ=255)
                                                  gtCGATACCATTTTTCTTCGGCATCATTACGTCAAGCAAAAGTAAATCAATGCTGTCGTCCAGAAGATCAAGCGCCTGTTCCCTATCGTGGGCAACAATCACGTTGaa                                                                                                               >  2:496819/1‑108 (MQ=255)
                                                   tCGATACCATTTTTCTTCGGCATCATTACGTCAAGCAAAAGTAAATCAATGCTGTCGTCCAGAAGATCAAGCGCCTGTTCCCTATCGTGGGCAACAATCACGTTGAAGCCTTCCATCTCGagca                                                                                              >  1:662239/1‑124 (MQ=255)
                                                   tCGATACCATTTTTCTTCGGCATCATTACGTCAAGCAAAAGTAAATCAATGCTGTCGTCCAGAAGATCAAGCGCCTGTTCCCTATCGTGGGCAACAATCACGTTGAAGCCTTCCATCTCGagca                                                                                              <  2:662239/124‑1 (MQ=255)
                                                            tttttCTTCGGCATCATTACGTCAAGCAAAAGTAAATCAATGCTGTCGTCCAGAAGATCAAGCGCCTGTTCCCTATCGTGGGCAACAATCACGTTGAAGCCTTCCATCTCGAGCAGCTCCTTTAATAGGGAAGTCAGct                                                                      >  1:1656413/1‑139 (MQ=255)
                                                             ttttCTTCGGCATCATTACGTCAAGCAAAAGTAAATCAATGCTGTCGTCCAGAAGATCAAGCGCCTGTTCCCTATCGTGGGCAACAATCACGTTGAAGCCtt                                                                                                          >  2:1861618/1‑102 (MQ=255)
                                                             ttttCTTCGGCATCATTACGTCAAGCAAAAGTAAATCAATGCTGTCGTCCAGAAGATCAAGCGCCTGTTCCCTATCGTGGGCAACAATCACGTTGAAGCCtt                                                                                                          <  1:1861618/102‑1 (MQ=255)
                                                              tttCTTCGGCATCATTACGTCAAGCAAAAGTAAATCAATGCTGTCGTCCAGAAGATCAAGCGCCTGTTCCCTATCGTGGGCAACAATCACGTTGAAGCCTTCCATCTCGAGCAGCTCCTTTAATAGGGAAGTCAGctct                                                                    <  2:1656413/139‑1 (MQ=255)
                                                                               cGTCAAGCAAAAGTAAATCAATGCTGTCGTCCAGAAGATCAAGCGCCTGTTCCCTATCGTGGGCAACAATCACGTTGAAGCCTTCCATCTCGAGCAGCTCCTTTAATAGGGAAGTCAGCTCTCGGTCATCATCAACTaa                                                   <  2:1991824/139‑1 (MQ=255)
                                                                                 tCAAGCAAAAGTAAATCAATGCTGTCGTCCAGAAGCGCAAGCGCCTGTTCCCTATCGTGGGCAACAATCACGCTGAAGCCTTCCAGCTCGAGCAGCTTCTTTAATAGGGAAGTCAGCTCTCGGTCATCATCAACTAACa                                                 <  1:106570/139‑1 (MQ=255)
                                                                                 tCAAGCAAAAGTAAATCAATGCTGTCGTCCAGAAGATCAAGCGCCTGTTCCCTATCGTGGGCAACAATCACGTTGAAGCCTTCCATCTCGAGCAGCTCCTTTAATAGGGAAGTCAGCTCTCGGTCATCATCAACTAACa                                                 <  1:311818/139‑1 (MQ=255)
                                                                                    aGCAAAAGTAAATCAATGCTGTCGTCCAGAAGATCAAGCGCCTGTTCCCTATCGTGGGCAACAATCACGTTg                                                                                                                 <  1:42825/72‑1 (MQ=255)
                                                                                    aGCAAAAGTAAATCAATGCTGTCGTCCAGAAGATCAAGCGCCTGTTCCCTATCGTGGGCAACAATCACGTTg                                                                                                                 >  2:42825/1‑72 (MQ=255)
                                                                                    aGCAAAAGTAAATCAATGCTGTCGTCCAGAAGATCAAGCGCCTGTTCCCTATCGTGGGCAACAATCACGTTGAAGCCTTCCATCTCGagca                                                                                              >  1:2009859/1‑91 (MQ=255)
                                                                                    aGCAAAAGTAAATCAATGCTGTCGTCCAGAAGATCAAGCGCCTGTTCCCTATCGTGGGCAACAATCACGTTGAAGCCTTCCATCTCGagca                                                                                              <  2:2009859/91‑1 (MQ=255)
                                                                                    aGCAAAAGTAAATCAATGCTGTCGTCCAGAAGATCAAGCGCCTGTTCCCTATCGTGGGCAACAATCACGTTGAAGCCTTCCATCTCGagca                                                                                              <  2:1781110/91‑1 (MQ=255)
                                                                                    aGCAAAAGTAAATCAATGCTGTCGTCCAGAAGATCAAGCGCCTGTTCCCTATCGTGGGCAACAATCACGTTGAAGCCTTCCATCTCGagca                                                                                              >  1:1781110/1‑91 (MQ=255)
                                                                                    aGCAAAAGTAAATCAATGCTGTCGTCCAGAAGATCAAGCGCCTGTTCCCTATCGTGGGCAACAATCACGTTGAAGCCTTCCATCTCGagc                                                                                               >  1:25408/1‑90 (MQ=255)
                                                                                    aGCAAAAGTAAATCAATGCTGTCGTCCAGAAGATCAAGCGCCTGTTCCCTATCGTGGGCAACAATCACGTTGAAGCCTTCCATCTCGagc                                                                                               <  2:1720718/90‑1 (MQ=255)
                                                                                    aGCAAAAGTAAATCAATGCTGTCGTCCAGAAGATCAAGCGCCTGTTCCCTATCGTGGGCAACAATCACGTTGAAGCCTTCCATCTCGagc                                                                                               >  1:1720718/1‑90 (MQ=255)
                                                                                    aGCAAAAGTAAATCAATGCTGTCGTCCAGAAGATCAAGCGCCTGTTCCCTATCGTGGGCAACAATCACGTTGAAGCCTTCCATCTCGagc                                                                                               <  2:25408/90‑1 (MQ=255)
                                                                                    aGCAAAAGTAAATCAATGCTGTCGTCCAGAAGATCAAGCGCCTGTTCCCTATCGTGGGCAACAATCACGTTGAAGCCTTCCATCTCGAGCAGCt                                                                                           >  1:645701/1‑94 (MQ=255)
                                                                                    aGCAAAAGTAAATCAATGCTGTCGTCCAGAAGATCAAGCGCCTGTTCCCTATCGTGGGCAACAATCACGTTGAAGCCTTCCATCTCGAGCAGCt                                                                                           <  2:645701/94‑1 (MQ=255)
                                                                                    aGCAAAAGTAAATCAATGCTGTCGTCCAGAAGATCAAGCGCCTGTTCCCTATCGTGGGCAACAATCACGTTGAAGCCTTCCATCTCGAGCAGCTCCTTTAATAgg                                                                                >  2:1722979/1‑105 (MQ=255)
                                                                                    aGCAAAAGTAAATCAATGCTGTCGTCCAGAAGATCAAGCGCCTGTTCCCTATCGTGGGCAACAATCACGTTGAAGCCTTCCATCTCGAGCAGCTCCTTTAATAgg                                                                                <  1:1722979/105‑1 (MQ=255)
                                                                                    aGCAAAAGTAAATCAATGCTGTCGTCCAGAAGATCAAGCGCCTGTTCCCTATCGTGGGCAACAATCACGTTGAAGCCTTCCATCTCGAGCAGCTCCTTTAATAGGGAAGTCAGCTCTCGGTCATCATCAACTAACAGGa                                              >  1:404372/1‑139 (MQ=255)
                                                                                    aGCAAAAGTAAATCAATGCTGTCGTCCAGAAGATCAAGCGCCTGTTCCCTATCGTGGGCAACAATCACGTTGAAGCCTTCCATCTCGAGCAGCTCCTTTAATAGGGAAGTCAGCTCTCGGTCATCATCAACTAACAGGa                                              >  1:1702190/1‑139 (MQ=255)
                                                                                    aGCAAAAGTAAATCAATGCTGTCGTCCAGAAGATCAAGCGCCTGTTCCCTATCGTGGGCAACAATCACGTTGAAGCCTTCCATCTCGAGCAGCTCCTTTAATAGGGAAGTCAGCTCTCGGTCATCATCAACTAACAGGa                                              >  1:1077427/1‑139 (MQ=255)
                                                                                    aGCAAAAGTAAATCAATGCTGTCGTCCAGAAGATCAAGCGCCTGTTCCCTATCGTGGGCAACAATCACGTTGAAGCCTTCCATCTCGAGCAGCTCCTTTAATAGGGAAGTCAGCTCTCGGTCATCATCAACTAACAGGa                                              >  2:1096808/1‑139 (MQ=255)
                                                                                     gCAAAAGTAAATCAATGCTGTCGTCCAGAAGATCAAGCGCCTGTTCCCTATCGTGGGCAACAATCACGTTGAAGCCTTCCATCTCGAGCAGCTCCTTTAATAGGGAAGTCAGCTCTCGGTCATCATCAACTAACAGGAt                                             >  1:668074/1‑139 (MQ=255)
                                                                                             aaaTCAATGCTGTCGTCCAGAAGATCAAGCGCCTGTTCCCTATCGTGGGCAACAATCACGTTGAAGCCTTCCATCTCGAGCAGCTCCTTTAATAGGGAAGTCAGCTCTCGGTCATCATCAACTAACAGGATTTTATTCa                                     <  2:1077427/139‑1 (MQ=255)
                                                                                              aaTCAATGCTGTCGTCCAGAAGATCAAGCGCCTGTTCCCTATCGTGGGCAACAATCACGTTGAAGCCTTCCATCTCGagc                                                                                               >  2:898430/1‑80 (MQ=255)
                                                                                              aaTCAATGCTGTCGTCCAGAAGATCAAGCGCCTGTTCCCTATCGTGGGCAACAATCACGTTGAAGCCTTCCATCTCGagc                                                                                               <  1:898430/80‑1 (MQ=255)
                                                                                              aaTCAATGCTGTCGTCCAGAAGATCAAGCGCCTGTTCCCTATCGTGGGCAACAATCACGTTGAAGCCTTCCATCTCGAGCAGCTCCTTTAATAGGGAAGTCAGCTCTCGGTCATCATCAACTAACAGGATTTTATTCAt                                    <  2:950782/139‑1 (MQ=255)
                                                                                              aaTCAATGCTGTCGTCCAGAAGATCAAGCGCCTGTTCCCTATCGTGGGCAACAATCACGTTGAAGCCTTCCATCTCGAGCAGCTCCTTTAATAGGGAAGTCAGCTCTCGGTCATCATCAACTAACAGGATTTTATTCAt                                    <  2:1193966/139‑1 (MQ=255)
                                                                                               aTCAATGCTGTCGTCCAGAAGATCAAGCGCCTGTTCCCTATCGTGGGCAACAATCACGTTGAAGCCTTCCATCTCGAGCAGCTCCTTTAATAGGGAAGTCAGCTCTCGGTCATCATCAACTAACAGGATTTTATTCAtt                                   <  2:1702190/139‑1 (MQ=255)
                                                                                                   aTGCTGTCGTCCAGAAGATCAAGCGCCTGTTCCCTATCGTGGGCAACAATCACGTTGAAGCCTTCCATCTCGAGCAGCTCCTTTAATAGGGAAGTCAGCTCTCGGTCATCATCAACTAACAGGATTTTATTCATTGttt                               >  1:485194/1‑139 (MQ=255)
                                                                                                    tGCTGTCGTCCAGAAGATCAAGCGCCTGTTCCCTATCGTGGGCAACAATCACGTTGAAGCCTTCCATCTCGagca                                                                                              <  1:1885906/75‑1 (MQ=255)
                                                                                                    tGCTGTCGTCCAGAAGATCAAGCGCCTGTTCCCTATCGTGGGCAACAATCACGTTGAAGCCTTCCATCTCGagca                                                                                              >  2:1885906/1‑75 (MQ=255)
                                                                                                     gCTGTCGTCCAGAAGATCAAGCGCCTGTTCCCTATCGTGGGCAACAATCACGTTGAATCCTTCCATCTCGAGCAGCTCCTTTAATAGGGAAGTCAGCTCTCGGTCATCATCAACTAACAGGATTTTATTCAt                                    >  2:1494688/1‑132 (MQ=255)
                                                                                                     gCTGTCGTCCAGAAGATCAAGCGCCTGTTCCCTATCGTGGGCAACAATCACGTTGAAGCCTTCCATCTCGAGCAGCTCCTTTAATAGGGAAGTCAGCTCTCgg                                                                 >  2:1016906/1‑103 (MQ=255)
                                                                                                     gCTGTCGTCCAGAAGATCAAGCGCCTGTTCCCTATCGTGGGCAACAATCACGTTGAAGCCTTCCATCTCGAGCAGCTCCTTTAATAGGGAAGTCAGCTCTCgg                                                                 <  1:1016906/103‑1 (MQ=255)
                                                                                                     gCTGTCGTCCAGAAGATCAAGCGCCTGTTCCCTATCGTGGGCAACAATCACGTTGAAGCCTTCCATCTCGAGCAGCTCCTTTAATAGGGAAGTCAGCTCTCGGTCATCATCAACTAACAGGATTTTATTCAt                                    <  1:1494688/132‑1 (MQ=255)
                                                                                                     gCTGTCGTCCAGAAGATCAAGCGCCTGTTCCCTATCGTGGGCAACAATCACGTTGAAGCCTTCCATCTCGAGCAGCTCCTTTAATAGGGAAGTCAGCTCTCGGTCATCATCAACTAACAGGATTTTATTCATTGTTTaa                             >  1:753500/1‑139 (MQ=255)
                                                                                                      cTGTCGTCCAGAAGATCAAGCGCCTGTTCCCTATCGTGGGCAACAATCACGTTGAAGCCTTCCATCTCGagcagc                                                                                            >  1:1126774/1‑75 (MQ=255)
                                                                                                      cTGTCGTCCAGAAGATCAAGCGCCTGTTCCCTATCGTGGGCAACAATCACGTTGAAGCCTTCCATCTCGagcagc                                                                                            <  2:1126774/75‑1 (MQ=255)
                                                                                                      cTGTCGTCCAGAAGATCAAGCGCCTGTTCCCTATCGTGGGCAACAATCACGTTGAAGCCTTCCATCTCGAGCAGCTCCTTTAATAGGGAAGTCAGCTCTCGGTCATCATCAACTAACAGGATTTTATTCATTGTTTaaa                            <  2:404372/139‑1 (MQ=255)
                                                                                                         tcgtcCAGAAGATCAAGCGCCTGTTCCCTATCGTGGGCAACAATCACGTTGAAGCCTTCCATCTCGagcag                                                                                             >  1:1514192/1‑71 (MQ=255)
                                                                                                         tcgtcCAGAAGATCAAGCGCCTGTTCCCTATCGTGGGCAACAATCACGTTGAAGCCTTCCATCTCGagcag                                                                                             <  2:1514192/71‑1 (MQ=255)
                                                                                                         tcgtcCAGAAGATCAAGCGCCTGTTCCCTATCGTGGGCAACAATCACGTTGAAGCCTTCCATCTCGAGCAGCTCCTTTAATAGGGAAGTCAGctct                                                                    <  2:1299862/96‑1 (MQ=255)
                                                                                                         tcgtcCAGAAGATCAAGCGCCTGTTCCCTATCGTGGGCAACAATCACGTTGAAGCCTTCCATCTCGAGCAGCTCCTTTAATAGGGAAGTCAGctct                                                                    >  1:1299862/1‑96 (MQ=255)
                                                                                                              cAGAAGATCAAGCGCCTGTTCCCTATCGTGGGCAACAATCACGTTGAAGCCTTCCATCTCGAGCAGCTCCTTTAATAGGGAAGTCAGCTCTCGGTCATCATCAACTAACAGGATTTTATTc                                      <  1:2054855/121‑1 (MQ=255)
                                                                                                              cAGAAGATCAAGCGCCTGTTCCCTATCGTGGGCAACAATCACGTTGAAGCCTTCCATCTCGAGCAGCTCCTTTAATAGGGAAGTCAGCTCTCGGTCATCATCAACTAACAGGATTTTATTc                                      >  2:2054855/1‑121 (MQ=255)
                                                                                                              cAGAAGATCAAGCGCCTGTTCCCTATCGTGGGCAACAATCACGTTGAAGCCTTCCATCTCGAGCAGCTCCTTTAATAGGGAAGTCAGCTCTCGGTCATCATCAACTAACAGGATTTTATTCATTGTTTAAATACCTCCg                    >  1:1242667/1‑139 (MQ=255)
                                                                                                               agaagaTCAAGCGCCTGTTCCCTATCGTGGGCAACAATCACGTTGAAGCCTTCCATCTCGAGCAGCTCCTTTAATAGGGAAGTCAGCTCTCGGTCATCATCAACTAACAGGATTTTATTCATTGTTTAAATACCTCCGa                   <  2:753500/139‑1 (MQ=255)
                                                                                                                gaagaTCAAGCGCCTGTTCCCTATCGTGGGCAACAATCACGTTGAAGCCTTCCATCTCGAGCAGCTCCTTTAATAGGGAAGTCAGCTCTCGGTCATCATCAACTAACAGGATTTTATTCATTGTTTAAATACCTCCGAg                  >  1:1483141/1‑139 (MQ=255)
                                                                                                                   gaTCAAGCGCCTGTTCCCTATCGTGGGCAACAATCACGTTGAAGCCTTCCATCTCGagca                                                                                              >  1:129491/1‑60 (MQ=255)
                                                                                                                   gaTCAAGCGCCTGTTCCCTATCGTGGGCAACAATCACGTTGAAGCCTTCCATCTCGagca                                                                                              <  2:129491/60‑1 (MQ=255)
                                                                                                                   gaTCAAGCGCCTGTTCCCTATCGTGGGCAACAATCACGTTGAAGCCTTCCATCTCGAGCAGCTc                                                                                          <  1:1118277/64‑1 (MQ=255)
                                                                                                                   gaTCAAGCGCCTGTTCCCTATCGTGGGCAACAATCACGTTGAAGCCTTCCATCTCGAGCAGCTc                                                                                          >  2:1118277/1‑64 (MQ=255)
                                                                                                                      cAAGCGCCTGTTCCCTATCGTGGGCAACAATCACGTTGAAGCCTTCCATCTCGAGCAGCTCCTTTAATAGGGAAGTCAGCTCTCGGTCATCATCAACTAACAGGATTTTATTc                                      >  2:1718044/1‑113 (MQ=255)
                                                                                                                      cAAGCGCCTGTTCCCTATCGTGGGCAACAATCACGTTGAAGCCTTCCATCTCGAGCAGCTCCTTTAATAGGGAAGTCAGCTCTCGGTCATCATCAACTAACAGGATTTTATTc                                      <  1:1718044/113‑1 (MQ=255)
                                                                                                                      cAAGCGCCTGTTCCCTATCGTGGGCAACAATCACGTTGAAGCCTTCCATCTCGAGCAGCTCCTTTAATAGGGAAGTCAGCTCTCGGTCATCATCAACTAACAGGATTTTATTCATTGTTTAAATACCTCCGAGGCAGaa            <  2:668074/139‑1 (MQ=255)
                                                                                                                        aGCGCCTGTTCCCTATCGTGGGCAACAATCACGTTGAAGCCTTCCATCTCGagca                                                                                              <  2:934556/55‑1 (MQ=255)
                                                                                                                        aGCGCCTGTTCCCTATCGTGGGCAACAATCACGTTGAAGCCTTCCATCTCGagca                                                                                              >  1:934556/1‑55 (MQ=255)
                                                                                                                         gcgcCTGTTCCCTATCGTGGGCAACAATCACGTTGAAGCCTTCCATCTCGAGCAGCTCCTTTAATAGGGAAGTCAGCTCTCGGTCATCATCAACTAACAGGATTTTATTCATTGTTTAAATACCTCCGAGGCAGAAAtt         <  2:139908/139‑1 (MQ=255)
                                                                                                                           gcCTGTTCCCTATCGTGGGCAACAATCACGTTGAAGCCTTCCATCTCGagca                                                                                              <  2:328577/52‑1 (MQ=255)
                                                                                                                           gcCTGTTCCCTATCGTGGGCAACAATCACGTTGAAGCCTTCCATCTCGagca                                                                                              >  1:328577/1‑52 (MQ=255)
                                                                                                                            ccTGTTCCCTATCGTGGGCAACAATCACGTTGAAGCCTTCCATCTCGAGCAGCTCCTTTAATAGGGAAGTCAGCTCTCGGTCATCATCAACTAACAGGATTTTATTCATTGTTTAAATACCTCCGAGGCAGAAATTACg      <  2:1236780/139‑1 (MQ=255)
                                                                                                                              tGTTCCCTATCGTGGGCAACAATCACGTTGAAGCCTTCCATCTCGAGCAGCTCCTTTAATAGGGAAGTCAGCTCTCGGTCATCATCAACTAACAGGATTTTATTCATTGTTTAAATACCTCCGAGGCAGAAATTACGtc    >  2:2041006/1‑139 (MQ=255)
                                                                                                                               gTTCCCTATCGTGGGCAACAATCACGTTGAAGCCTTCCATCTCGagca                                                                                              >  2:1682752/1‑48 (MQ=255)
                                                                                                                               gTTCCCTATCGTGGGCAACAATCACGTTGAAGCCTTCCATCTCGagca                                                                                              <  1:1682752/48‑1 (MQ=255)
                                                                                                                               gTTCCCTATCGTGGGCAACAATCACGTTGAAGCCTTCCATCTCGAGCAGCTCCTTTAATAGGGAAGTCAGCTCTCGGTCATCATCAACTAACAGGATTTTATTCATTGTTTAAATACCTCCGAGGc                <  2:562419/126‑1 (MQ=255)
                                                                                                                               gTTCCCTATCGTGGGCAACAATCACGTTGAAGCCTTCCATCTCGAGCAGCTCCTTTAATAGGGAAGTCAGCTCTCGGTCATCATCAACTAACAGGATTTTATTCATTGTTTAAATACCTCCGAGGc                >  1:562419/1‑126 (MQ=255)
                                                                                                                               gTTCCCTATCGTGGGCAACAATCACGTTGAAGCCTTCCATCTCGAGCAGCTCCTTTAATAGGGAAGTCAGCTCTCGGTCATCATCAACTAACAGGATTTTATTCATTGTTTAAATACCTCCGAGGCAGAAATTACGtca   >  1:807640/1‑139 (MQ=255)
                                                                                                                                ttCCCTATCGTGGGCAACAATCACGTTGAAGCCTTCCATCTCGagcagc                                                                                            >  1:1396554/1‑49 (MQ=255)
                                                                                                                                ttCCCTATCGTGGGCAACAATCACGTTGAAGCCTTCCATCTCGagcagc                                                                                            <  2:1396554/49‑1 (MQ=255)
                                                                                                                                ttCCCTATCGTGGGCAACAATCACGTTGAAGCCTTCCATCTCGAGCAGCTCCTTTAATAGGGAAGTCAGCTCTCGGTCATCATCAACTAACAGGATTTTATTCATTGTTTAAATACCTCCGAGGCAGAAATTACGtcat  <  2:485194/139‑1 (MQ=255)
                                                                                                                                     |                                                                                                                                     
GTCAACATAATGACAGGCGTCTGGTGTGTCTGGCGAAGTGCTTTTAATGTGTCGATACCATTTTTCTTCGGCATCATTACGTCAAGCAAAAGTAAATCAATGCTGTCGTCCAGAAGATCAAGCGCCTGTTCCCCATCGTGGGCAACAATCACGTTGAAGCCTTCCATCTCGAGCAGCTCCTTTAATAGGGAAGTCAGCTCTCGGTCATCATCAACTAACAGGATTTTATTCATTGTTTAAATACCTCCGAGGCAGAAATTACGTCAT  >  NC_000913/4105438‑4105704

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑