Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	1,769,478	(G)7→8	coding (405/1113 nt)	ydiK →	UPF0118 family inner membrane protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,769,471	1	.	G	100.0%	172.0 / NA	48	M133R (ATG→AGG)	ydiK	UPF0118 family inner membrane protein
Reads supporting (aligned to +/- strand):  ref base . (0/0);  new base G (20/28);  total (20/28)

TCGACGGCAGCGGCCCGCTAATTAAAGCCATTTCCAGCGGTGACATGACGTTACCCGATCTGGCGTGGCTTAATACCATTCCGGTGATTGGCGCGAAGCTGTATGCAGGCTGGCACAACTTGCTGGATAT‑‑GGGGGGGACGGCGATCATGGCGAAAGTCCGCCCTTATATTGGCACCACCACCACCTGGTTCGTTGGGCAGGCGGCGCATATCGGGCGCTTTATGGTGCATTGTGCGCTGATGCTTCTCTTCAGTGCCCTG  >  NC_000913/1769342‑1769601                                                                                                                                   |                                                                                                                                    tcgACGGCAGCGGCCCGCTAATTAAAGCCATTTCCAGCGGTGACATGGCGTTACCCGATCTGGCGTGGCTTAATACCATTCCGGTGATTGGCGCGAAGCTGTATGCAGGCTGGCACAACTTGCTGGATAT‑‑gggggggga                                                                                                                           >  1:194638/1‑137 (MQ=255)   gACGGCAGCGGCCCGCTAATTAAAGCCATTTCCAGCGGTGACATGACGTTACCCGATCTGGCGTGGCTTAATACCATTCCGGTGATTGGCGCGAAGCTGTATGCAGGCTGGCACAACTTGCTGGATAT‑‑ggggg                                                                                                                               <  2:702924/133‑1 (MQ=255)   gACGGCAGCGGCCCGCTAATTAAAGCCATTTCCAGCGGTGACATGACGTTACCCGATCTGGCGTGGCTTAATACCATTCCGGTGATTGGCGCGAAGCTGTATGCAGGCTGGCACAACTTGCTGGATAT‑‑ggggg                                                                                                                               >  1:702924/1‑133 (MQ=255)      ggCAGCGGCCCGCTAATTAAAGCCATTTCCAGCGGTGACATGACGTTACCCGATCTGGCGTGGCTTAATACCATTCCGGTGATTGGCGCGAAGCTGTATGCAGGCTGGCACAACTTGCTGGATATG‑GGGGGGGACGGCg                                                                                                                       >  2:115141/1‑139 (MQ=255)      ggCAGCGGCCCGCTAATTAAAGCCATTTCCAGCGGTGACATGACGTTACCCGATCTGGCGTGGCTTAATACCATTCCGGTGATTGGCGCGAAGCTGTATGCAGGCTGGCACAACTTGCTGGATATG‑GGGGGGGACGGCg                                                                                                                       <  1:541044/139‑1 (MQ=255)                          aGCCATTTCCAGCGGTGACATGAGGTTACCCGATCTGGCGTGGCTTAATACCATTCCGGTGATTGGCGCGAAGCTGTATGCAGGCTGGCACAACTTGCTGGATATG‑GGGGGGGACGGCGATCATGGCGAAAGTCCGccc                                                                                                   <  2:194638/139‑1 (MQ=255)                                ttCCAGCGGTGACATGACGTTACCCGATCTGGCGTGGCTTAATACCATTCCGGTGATTGGCGCGAAGCTGTATGCAGGCTGGCACAACTTGCTGGATATG‑GGGGGGGACGGCGATCATGGCGAAAGTCCg                                                                                                      <  2:250208/130‑1 (MQ=255)                                ttCCAGCGGTGACATGACGTTACCCGATCTGGCGTGGCTTAATACCATTCCGGTGATTGGCGCGAAGCTGTATGCAGGCTGGCACAACTTGCTGGATATG‑GGGGGGGACGGCGATCATGGCGAAAGTCCg                                                                                                      >  1:250208/1‑130 (MQ=255)                                   cAGCGGTGACATGACGTTACCCGATCTGGCGTGGCTTAATACCATTCCGGTGATTGGCGCGAAGCTGTATGCAGGCTGGCACAACTTGCTGGATATG‑GGGGGGGACGGCGATCATGGCGAAAGTCCGCCCTTATATTgg                                                                                          <  2:341367/139‑1 (MQ=255)                                     gCGGTGACATGACGTTACCCGATCTGGCGTGGCTTAATACCATTCCGGTGATTGGCGCGAAGCTGTATGCAGGCTGGCACAACTTGCTGGATATG‑GGGGGGGACGGCGATCATGGCGAAAGTCCGCCCTTATATTGGca                                                                                        >  2:377803/1‑139 (MQ=255)                                        gTGACATGACGTTACCCGATCTGGCGTGGCTTAATACCATTCCGGTGATTGGCGCGAAGCTGTATGCAGGCTGGCACAACTTGCTGGATATG‑GGGGGGGACGGCGATCATGGCGAAAGTCCGCCCTTATATTGGcacca                                                                                     <  2:41210/139‑1 (MQ=255)                                                   ttACCCGATCTGGCGTGGCTTAATACCATTCCGGTGATTGGCGCGAAGCTGTATGCAGGCTGGCACAACTTGCTGGATATG‑GGGGGGGACGGCGATCATGGCGAAAGTCCGCCCTTATATTGGCACCACCACCACCTgg                                                                          >  1:577341/1‑139 (MQ=255)                                                       ccGATCTGGCGTGGCTTAATACCATTCCGGTGATTGGCGCGAAGCTGTATGCAGGCTGGCACAACTTGCTGGATAT‑‑gggg                                                                                                                                >  1:1016944/1‑80 (MQ=255)                                                       ccGATCTGGCGTGGCTTAATACCATTCCGGTGATTGGCGCGAAGCTGTATGCAGGCTGGCACAACTGGCTGGATAT‑‑gggg                                                                                                                                <  2:1016944/80‑1 (MQ=255)                                                                cGTGGCTTAATACCATTCCGGTGATTGGCGCGAAGCTGTATGCAGGCTGGCACAACTTGCTGGATATG‑GGGGGGGACGGCGATCATGGCGAAAGTCCGCCCTTATATTGGCACCACCACCACCTGGTTCGTTGGGCAgg                                                             >  2:132000/1‑139 (MQ=255)                                                                     cTTAATACCATTCCGGTGATTGGCGCGTAGCTGTATGCAGGCTGGCACAACTTGCTGGATATG‑GGGGGGGACGGCGATCATGGCGAAAGTCCGCCCTTATAtt                                                                                            <  1:683809/103‑1 (MQ=255)                                                                     cTTAATACCATTCCGGTGATTGGCGCGAAGCTGTATGCAGGCTGGCACAACTTGCTGGATATG‑GGGGGGGACGGCGATCATGGCGAAAGTCCGCCCTTATAtt                                                                                            >  2:683809/1‑103 (MQ=255)                                                                     cTTAATACCATTCCGGTGATTGGCGCGAAGCTGTATGCAGGCTGGCACAACTTGCTGGATAT‑‑gggggg                                                                                                                              >  2:465418/1‑68 (MQ=255)                                                                     cTTAATACCATTCCGGTGATTGGCGCGAAGCTGTATGCAGGCTGGCACAACTTGCTGGATAT‑‑gggggg                                                                                                                              <  1:465418/68‑1 (MQ=255)                                                                       tAATACCATTGCGGTGATTGGCGCGAAGCTGTATGCAGGCTGGCACAACTTGCTGGATATG‑GGGGGGGACGGCGATCATGGCGAAAGTCCGCCCTTATATTGGCACCACCACCACCTGGTTCGTTGGGCAGGCGGCGCa                                                      >  2:129648/1‑139 (MQ=255)                                                                               ttgcGGTGATTGGCGCGAAGCTGTATGCAGGCTGGCACAACTTGCAGGAGATG‑GGGGGGGACGGCGAAAATGGAAAAAATCCGAACTTATATAGGGACAAACACCACCTGGTTAGTTGGGCAGGCGGCGCaaagaaggc                                              >  2:540428/4‑131 (MQ=255)                                                                               ttCCGGTGATTGGCGCGAAGCTGTATGCAGGCTGGCACAACTTGCTGGATATG‑GGGGGGGACGGCGATCATGGCGAAAGTCCGCCCTTATATTGGCACCACCACCACCTGGTTCGTTGGGCAGGCGGCGCATATCggg                                               <  2:430902/138‑1 (MQ=255)                                                                               ttCCGGTGATTGGCGCGAAGCTGTATGCAGGCTGGCACAACTTGCTGGATATG‑GGGGGGGACGGCGATCATGGCGAAAGTCCGCCCTTATATTGGCACCACCACCACCTGGTTCGTTGGGCAGGCGGCGCATATCggg                                               >  1:430902/1‑138 (MQ=255)                                                                                  cGGTGATTGGCGCGAAGCTGTATGCAGGCTGGCACAACTTGCTGGATATG‑GGGGGGGACGGCGATCATGGCGAAAGTCCGCCCTTATATTGGCACCACCATCACCTGGTTCGTTGGGCAGGCGGCGCATATCGGGCGCt                                           <  2:62664/139‑1 (MQ=255)                                                                                  cGGTGATTGGCGCGAAGCTGTATGCAGGCTGGCACAACTTGCTGGATATG‑GGGGGGGACGGCGATCATGGCGAAAGTCCGCCCTTATATTGGCACCACCACCACCTGGTTCGTTGGGCAGGCGGCGCATATCGGGCGCt                                           <  1:132000/139‑1 (MQ=255)                                                                                  cGGTGATTGGCGCGAAGCTGTATGCAGGCTGGCACAACTTGCTGGATATG‑GGGGGGGACGGCGATCATGGCGAAAGTCCGCCCTTATATTGGCACCACCACCACCTGGTTCGTTGGGCAGGCGGCGCATATCGGGCGCt                                           <  2:512524/139‑1 (MQ=255)                                                                                  cGGTGATTGGCGCGAAGCTGTATGCAGGCTGGCACAACTTGCTGGATATG‑GGGGGGGACGGCGATCATGGCGAAAGTCCGCCCTTATATTGGCACCACCACCACCTGGTTCGTTGGGCAGGCGGCGCATATCGGGCGCt                                           <  1:115141/139‑1 (MQ=255)                                                                                    gTGATTGGCGCGAAGCTGTATGCAGGCTGGCACAACTTGCTGGATATG‑GGGGGGGACGGCGATCATGGCGAAAGTCCGCCCTTATATTGGCACCACCACCACCTGGTTCGTTGGGCAGGCGGCGCATATCGGGCGCttt                                         >  2:263391/1‑139 (MQ=255)                                                                                    gTGATTGGCGCGAAGCTGTAAGCAGGCTGGCACAACTTGCTGGATATG‑GGGGGGGACGGCGATCATGGCGAAAGTCCGCCCTTATATTGGCACCACCACCACCTGGTTCGTTGGGCAGGCGGCGCATATCGGGCGCttt                                         >  1:785120/1‑139 (MQ=255)                                                                                      gATTGGCGCGAAGCTGTATGCAGGCTGGCACAACTTGCTGGATATG‑GGGGGGGACGGCGATCATGGCGAAAGTCCGCCCTTATATTGGCACCACCACCACCTGGTTCGTTGGGCAGGCGGCGCATATCGGGCGCTTTAt                                       <  1:263391/139‑1 (MQ=255)                                                                                         tGGCGCGAAGCTGTATGCAGGCTGGCACAACTTGCTGGATATG‑GGGGGGGACGGCGATCATGGCGAAAGTCCGCCCTTATATTGGCACCACCACCACCTGGTTCGTTGGGCAGGCGGCGCATATCGGGCGCTTTATGGt                                    <  1:540428/139‑1 (MQ=255)                                                                                         tGGCGCGAAGCTGTATGCAGGCTGGCACAACTTGCTGGATATG‑GGGGGGGACGGCGATCATGGCGAAAGTCCGCCCTTATATTGGCACCACCACCACCTGGTTCGTTGGGCAGGCGGCGCATATCGGGCGCTTTATGGt                                    <  2:726478/139‑1 (MQ=255)                                                                                         tGGCGCGAAGCTGTAAGCAGGCTGGCACAACTTGCTGGATATG‑GGGGGGGACGGCGATCATGGCGAAAGTCCGCCCTTATATTGGCACCACCACCACCTGGTTCGTTGGGCAGGCGGCGCATATCGGGCGCTTTATGGt                                    <  2:785120/139‑1 (MQ=255)                                                                                          ggCGCGAAGCTGTATGCAGGCTGGCACAACTTGCTGGATATG‑GGGGGGGACGGCGATCATGGCGAAAGt                                                                                                         <  2:95326/69‑1 (MQ=255)                                                                                          ggCGCGAAGCTGTATGCAGGCTGGCACAACTTGCTGGATATG‑GGGGGGGACGGCGATCATGGCGAAAGt                                                                                                         >  1:95326/1‑69 (MQ=255)                                                                                          ggCGCGAAGCTGTATGCAGGCTGGCACAACTTGCTGGATATG‑GGGGGGGACGGCGATCATGGCGAAAGTCCGCCCTTATATTGGCACCACCACCACCTGGTTCGTTGGGCAGGCGGCGCATATCGGGCGCt                                           >  2:153853/1‑131 (MQ=255)                                                                                          ggCGCGAAGCTGTATGCAGGCTGGCACAACTTGCTGGATATG‑GGGGGGGACGGCGATCATGGCGAAAGTCCGCCCTTATATTGGCACCACCACCACCTGGTTCGTTGGGCAGGCGGCGCATATCGGGCGCt                                           <  1:153853/131‑1 (MQ=255)                                                                                          ggCGCGAAGCTGTATGCAGGCTGGCACAACTTGCTGGATATG‑GGGGGGGACGGCGATCATGGCGAAAGTCCGCCCTTATATTGGCACCACCACCACCTGGTTCGTTGGGCAGGCGGCGCATATCGGGCGCTTTATGGt                                    <  1:450317/138‑1 (MQ=255)                                                                                          ggCGCGAAGCTGTATGCAGGCTGGCACAACTTGCTGGATATG‑GGGGGGGACGGCGATCATGGCGAAAGTCCGCCCTTATATTGGCACCACCACCACCTGGTTCGTTGGGCAGGCGGCGCATATCGGGCGCTTTATGGt                                    >  2:450317/1‑138 (MQ=255)                                                                                            cgcgAAGCTGTATGCAGGCTGGCACAACTTGCTGGATATG‑GGGGGGGACGGCGATCATGGCGAAAGTCCGCCCTTATATTGGCACCACCACCACCTGGTTCGTTGGGCAGGCGGCGCATATCGGGCGCTTTATGGTGCa                                 >  1:403125/1‑139 (MQ=255)                                                                                              cgAAGCTGTATGCAGGCTGGCACAACTTGCTGGATATG‑GGGGGGGACGGCGATCATGGCGAAAGTCCGCCCTTATATTGGCACCACCACCACCTGGTTCGTTGGGCAGGCGGCGCATATCGGGCGCTTTATGGTGCAtt                               <  1:129648/139‑1 (MQ=255)                                                                                               gAAGCTGTATGCAGGCTGGCACAACTTGCTGGATATG‑GGGGGGGACGGCGATCATGGCGAAAGTCCGCCCTTATATTGGCACCACCACCACCTGGTTCGTTGGGCAGGCGGCGCATATCGGGCGCTTTATGGTGCATtg                              <  1:199784/139‑1 (MQ=255)                                                                                                  gcggTATGAAGGCTGGAAAAACTGGCTGAATATGGGGGGGGGACGGCGATCATGGCGAAAGTCCGCCCTTATATTGGCACCACCACCACCTGGTTCGTTGGGCAGGCGGCGCATATCGGGCGCTTTATGGTGCATtgtg                            <  2:584054/136‑1 (MQ=255)                                                                                                    tGTATGCAGGCTGGCACAACTTGCTGGATATG‑GGGGGGGACGGCGATCATGGCGAAAGTCCGCCCTTATATTGGCACCACCACCACCTGGTTCGTTGGGCAGGCGGCGCATATCGGGCGCTTTATGGTGCATTGTgcgc                         <  1:377803/139‑1 (MQ=255)                                                                                                            ggCTGGCACAACTTGCTGGATATG‑GGGGGGGACGGCGATCATGGCGAAAGTCCGCCCTTATATTGGCACCACCACCACCTGGTTCGTTGGGCAGGCGGCGCATATCGGGCGCTTTATGGTGCATTGTGCGCTGATGCtt                 <  1:526401/139‑1 (MQ=255)                                                                                                                ggCACAACTTGCTGGATATG‑GGGGGGGACGGCGATCATGGCGAAAGTCCGCCCTTATATTGGcac                                                                                       <  2:1021782/65‑1 (MQ=255)                                                                                                                ggCACAACTTGCTGGATATG‑GGGGGGGACGGCGATCATGGCGAAAGTCCGCCCTTATATTGGcac                                                                                       >  1:1021782/1‑65 (MQ=255)                                                                                                                ggCACAACTTGCTGGATATG‑GGGGGGGACGGCGATCATGGCGAAAGTCCGCCCTTATATTGGCACCACCACCACCTGGTTCGTTGGGCAggcg                                                           <  2:218846/93‑1 (MQ=255)                                                                                                                ggCACAACTTGCTGGATATG‑GGGGGGGACGGCGATCATGGCGAAAGTCCGCCCTTATATTGGCACCACCACCACCTGGTTCGTTGGGCAggcg                                                           >  1:218846/1‑93 (MQ=255)                                                                                                                  cacaACTTGCTGGATATG‑GGGGGGGACGGCGATCATGGCGAAAGTCCGCCCTTATATTGGCACCACCACCACCTGGTTCGTTGGGCAGGCGGCGCATATCGGGCGCTTTATGGTGCAtt                               <  1:806293/119‑1 (MQ=255)                                                                                                                  cacaACTTGCTGGATATG‑GGGGGGGACGGCGATCATGGCGAAAGTCCGCCCTTATATTGGCACCACCACCACCTGGTTCGTTGGGCAGGCGGCGCATATCGGGCGCTTTATGGTGCAtt                               >  2:806293/1‑119 (MQ=255)                                                                                                                        ttGCTGGATATG‑GGGGGGGACGGCGATCATGGCGAAAGTCCGCCCTTATATTGGCACCACCACCACCTGGTTCGTTGGGCAGGCGGCGCATATCGGGCGCTTTATGGTGCATTGTGCGCTGATGCTTCTCTTCAGTGcc     <  1:248876/139‑1 (MQ=255)                                                                                                                           cTGGATATG‑GGGGGGGACGGCGATCATGGCGAAAGTCCGCCCTTATATTGGCACCACCACCACCTGGTTCGTTGGGCAGGCGGCGCATATCGGGCGCTTTATGGTGCATTGTGCGCTGATGCTTCTCTTCAGTGc      <  1:288481/135‑1 (MQ=255)                                                                                                                           cTGGATATG‑GGGGGGGACGGCGATCATGGCGAAAGTCCGCCCTTATATTGGCACCACCACCACCTGGTTCGTTGGGCAGGCGGCGCATATCGGGCGCTTTATGGTGCATTGTGCGCTGATGCTTCTCTTCAGTGc      >  2:288481/1‑135 (MQ=255)                                                                                                                           cTGGATATG‑GGGGGGGACGGCGATCATGGCGAAAGTCCGCCCTTATATTGGCACCACCACCACCTGGTTCGTTGGGCAGGCGGCGCATATCGGGCGCTTTATGGTGCATTGTGCGCTGATGCTTCTCTTCAGTGCCctc  >  2:532215/1‑138 (MQ=255)                                                                                                                                   |                                                                                                                                    TCGACGGCAGCGGCCCGCTAATTAAAGCCATTTCCAGCGGTGACATGACGTTACCCGATCTGGCGTGGCTTAATACCATTCCGGTGATTGGCGCGAAGCTGTATGCAGGCTGGCACAACTTGCTGGATAT‑‑GGGGGGGACGGCGATCATGGCGAAAGTCCGCCCTTATATTGGCACCACCACCACCTGGTTCGTTGGGCAGGCGGCGCATATCGGGCGCTTTATGGTGCATTGTGCGCTGATGCTTCTCTTCAGTGCCCTG  >  NC_000913/1769342‑1769601

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑