| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 3,815,863 | C→T | pseudogene (19/48 nt) | rph ← | ribonuclease PH (defective),enzyme, Degradation of RNA, RNase PH |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,815,863 | 0 | C | T | 100.0% | 95.2 / NA | 30 | pseudogene (19/48 nt) | rph | ribonuclease PH (defective),enzyme, Degradation of RNA, RNase PH |
| Reads supporting (aligned to +/- strand): ref base C (0/0); new base T (14/16); total (14/16) | |||||||||||
ATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGATTCCCCTCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCA > NC_000913/3815767‑3815978 | aTGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGTTACAATGGATTCGATTCCCCTC‑GGCCAGAGCCAACAAGATGa > 1:302295/1‑139 (MQ=255) cTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGTTACAATGGATTCGATTCCCCTC‑GGCCAGAGCCAACAAGATGAGTAg < 1:1050273/139‑1 (MQ=255) tCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGTTACAATGGATTCGATTCCCCTC‑GGCCAGAGCCAACAAGATGAGTAGct > 2:120757/1‑139 (MQ=255) ttttCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGTTACAATGGATTCGATTCCCCt < 1:989705/96‑1 (MQ=255) ttttCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGTTACAATGGATTCGATTCCCCt > 2:989705/1‑96 (MQ=255) ttCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAGATCAGTTTGCCAGCGCCGCCTTCTGCGTCGTTACAATGgattcgat > 2:724824/1‑88 (MQ=255) ttCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAGATCAGTTTGCCAGCGCCGCCTTCTGCGTCGTTACAATGgattcgat < 1:724824/88‑1 (MQ=255) tCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGTTACAATGGATTCGATTCCCCTC‑GGCCAGAGCCAACAAGATGAGTAGCTCtt > 1:179744/1‑123 (MQ=255) tCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGTTACAATGGATTCGATTCCCCTC‑GGCCAGAGCCAACAAGATGAGTAGCTCtt < 2:179744/123‑1 (MQ=255) cTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGTTACAATGgat > 2:217909/1‑81 (MQ=255) cTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGTTACAATGgat < 1:217909/81‑1 (MQ=255) aCAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGTTACAATGGATTCGATTCCCCTC‑GGCCaga < 1:844951/94‑1 (MQ=255) aCAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGTTACAATGGATTCGATTCCCCTC‑GGCCaga > 2:844951/1‑94 (MQ=255) cAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGTTACAATGGATTCGATTCCCCTC‑GGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTg < 1:935260/139‑1 (MQ=255) aaaaaaaaGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGTTACAATGgattcgat > 1:889706/1‑78 (MQ=255) aaaaaaaaGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGTTACAATGgattcgat < 2:889706/78‑1 (MQ=255) gACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGTTACAATGGATTCGATTCCCCTC‑GGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCa < 1:120757/139‑1 (MQ=255) aCTCTTCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGTTTCAATGgattcga < 1:566109/65‑1 (MQ=255) aCTCATCAGTCGCCTTAAAAATCAGTTTGGCAGCGCCGCCTTCTGCGTCGTTACAATGgattcga > 2:566109/1‑65 (MQ=255) gCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGTTACAATGGATTCGATTCCCCTC‑GGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGc < 2:892434/105‑1 (MQ=255) gCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGTTACAATGGATTCGATTCCCCTC‑GGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGc > 1:892434/1‑105 (MQ=255) ccTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGTTACAATGGATTCGATTCCCCTC‑GGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTg > 1:985717/1‑124 (MQ=255) ccTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGTTACAATGGATTCGATTCCCCTC‑GGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTg < 2:985717/124‑1 (MQ=255) aGTTTGCCAGCGCCGCCTTCTGCGTCGTTACAATGGATTCGATTCCCCTC‑GGCCAGAGcc > 2:152392/1‑60 (MQ=255) aGTTTGCCAGCGCCGCCTTCTGCGTCGTTACAATGGATTCGATTCCCCTC‑GGCCAGAGcc < 1:152392/60‑1 (MQ=255) aGTTTGCCAGCGCCGCCTTCTGCGTCGTTACAATGGATTCGATTCCCCTC‑GGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTg < 2:337932/113‑1 (MQ=255) aGTTTGCCAGCGCCGCCTTCTGCGTCGTTACAATGGATTCGATTCCCCTC‑GGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTg > 1:337932/1‑113 (MQ=255) ttGCCAGCGCCGCCTTCTGCGTCGTTACAATGGATTCGATTCCCCTC‑GGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGtca < 2:302295/139‑1 (MQ=255) ccTTCTGCGTCGTTACAATGGATTCGATTCCCCTC‑GGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTg < 2:434703/88‑1 (MQ=255) ccTTCTGCGTCGTTACAATGGATTCGATTCCCCTC‑GGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTg > 1:434703/1‑88 (MQ=255) | ATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGATTCCCCTCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCA > NC_000913/3815767‑3815978 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |