| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 4,105,571 | C→T | G34R (GGG→AGG) | cpxR ← | response regulator in two‑component regulatory system with CpxA |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,105,571 | 0 | C | T | 100.0% | 135.8 / NA | 43 | G34R (GGG→AGG) | cpxR | response regulator in two‑component regulatory system with CpxA |
| Reads supporting (aligned to +/- strand): ref base C (0/0); new base T (21/22); total (21/22) | |||||||||||
ATGACAGGCGTCTGGTGTGTCTGGCGAAGTGCTTTTAATGTGTCGATACCATTTTTCTTCGGCATCATTACGTCAAGCAAAAGTAAATCAATGCTGTCGTCCAGAAGATCAAGCGCCTGTTCCCCATCGTGGGCAACAATCACGTTGAAGCCTTCCATCTCGAGCAGCTCCTTTAATAGGGAAGTCAGCTCTCGGTCATCATCAACTAACAGGATTTTATTCATTGTTTAAATACCTC > NC_000913/4105447‑4105684 | aTGACAGGCGTCTGGTGTGTCTGGCGAAGTGCTTTTAATGTGTCGATACCATTTTTCTTCGGCATCATTACGTCAAGCAAAAGTAAATCAATGCTGTCGTCCAGAAGATCAAGCGCCTGTTCCCTATGGTGGGcaacaa > 1:742301/1‑139 (MQ=255) cAGGCGTCTGGTGTGTCTGGCGAAGTGCTTTTAATGTGTCGATACCATTTTTCTTCGGCATCATTACGTCAAGCAAAAGTAAATCAATGCTGTCGTCCAGAAGATCAAGCGCCTGTTCCCTATCGTGGGCAACAATCAc > 2:119648/1‑139 (MQ=255) gCGTCTGGTGTGTCTGGCGAAGTGCTTTTAATGTGTCGATACCATTTTTCTTCGGCATCATTACGTCAAGCAAAAGTAAATCAATGCTGTCGTCCAGAAGATCAAGCGCCTGTTCCCTATCGTGGGCAACAATCACGtt > 1:1076020/1‑139 (MQ=255) gCGTCTGGTGTGTCTGGCGAAGTGCTTTTAATGTGTCGATACCATTTTTCTTCGGCATCATTACGTCAAGCAAAAGTAAATCAATGCTGTCGTCCAGAAGATCAAGCGCCTGTTCCCTATCGTGGGCAACAATCACGtt > 2:260780/1‑139 (MQ=255) gCGTCTGGTGTGTCTGGCGAAGTGCTTTTAATGTGTCGATACCATTTTTCTTCGGCATCATTACGTCAAGCAAAAGTAAATCAATGCTGTCGTCCAGAAGATCAAGCGCCTGTTCCCTATCGTGGGCAACAATCACGtt > 2:137211/1‑139 (MQ=255) tCTGGTGTGTCTGGCGAAGTGCTTTTAATGTGTCGATACCATTTTTCTTCGGCATCATTACGTCAAGCAAAAGTAAATCAATGCTGTCGTCCAGAAGATCAAGCGCCTGTTCCCTATCGTGGGCAACAATCACGTTGaa < 1:672651/139‑1 (MQ=255) tgtgtCTGGCGAAGTGCTTTTAATGTGTCGATACCATTTTTCTTCGGCATCATTACGTCAAGCAAAAGTAAATCAATGCTGTCGTCCAGAAGATCAAGCGCCTGTTCCCTATCGTGGGCAACAATCACGTTGAAGCCtt < 2:1076020/139‑1 (MQ=255) aGTGCTTTTAATGTGTCGATACCATTTTTCTTCGGCATCATTACGTCAAGCAAAAGTAAATCAATGCTGTCGTCCAGAAGATCAAGCGCCTGTTCCCTATCGTGGGCAACAATCACGTTGAAGCCTTCCATCTCGagca < 1:119648/139‑1 (MQ=255) aGTGCTTTTAATGTGTCGATACCATTTTTCTTCGGCATCATTACGTCAAGCAAAAGTAAATCAATGCTGTCGTCCAGAAGATCAAGCGCCTGTTCCCTATCGTGGGCAACAATCACGTTGAAGCCTTCCATCTCGagca < 2:242977/139‑1 (MQ=255) tGCTTTTAATGTGTCGATACCATTTTTCTTCGGCATCATTACGTCAAGCAAAAGTAAATCAATGCTGTCGTCCAGAAGATCAAGCGCCTGTTCCCTATCGTGGGCAACAATCACGTTGAAGCCTTCCATCTCGagcagc < 1:260780/139‑1 (MQ=255) tttCTTCGGCATCATTACGTCAAGCAAAAGTAAATCAATGCTGTCGTCCAGAAGATCAAGCGCCTGTTCCCTATCGTGGGCAACAATCACGTTGAAGCCTTCCATCTCGAGCAGCTCCTTTAATAGGGAAGTCAGctct < 2:40641/139‑1 (MQ=255) ttcGGCATCATTACGTCAAGCAAAAGTAAATCAATGCTGTCGTCCAGAAGATCAAGCGCCTGTTCCCTATCGTGGGCAACAATCACGTTGAAGCCTTCCATCTCGAGCAGCTCCTTTAATAGGGAAGTCAGCTCTCGGt < 2:989951/139‑1 (MQ=255) cGGCATCATTACGTCAAGCAAAAGTAAATCAATGCTGTCGTCCAGAAGATCAAGCGCCTGTTCCCTATCGTGGGCAACAATCACGTTGAAGCCTTCCATCTCGAGCAGCTCCTTTAATAGGGAAGTCAGCTCTCGGtca > 1:533528/1‑139 (MQ=255) tCAAGCAAAAGTAAATCAATGCTGTCGTCCAGAAGATCAAGCGCCTGTTCCCTATCGTGGGCAACAATCACGTTGAAGCCTTCCATCTCGAGCAGCTCCTTTAATAGGGAAGTCAGCTCTCGGTCATCATCAACTAACa < 2:105942/139‑1 (MQ=255) aGCAAAAGTAAATCAATGCTGTCGTCCAGAAGATCAAGCGCCTGTTCCCTATCGTGGGCAACAATCACGTTGAAGCCTTCCATCTCGagca < 2:786775/91‑1 (MQ=255) aGCAAAAGTAAATCAATGCTGTCGTCCAGAAGATCAAGCGCCTGTTCCCTATCGTGGGCAACAATCACGTTGAAGCCTTCCATCTCGagca > 1:786775/1‑91 (MQ=255) aaaTCAATGCTGTCGTCCAGAAGATCAAGCGCCTGTTCCCTATCGTGGGCAACAATCACGTTGAAGCCTTCCATCTCGAGCAGCTCCTTTAATAGGGAAGTCAGCTCTCGGTCATCATCATCTAACAGGATTTTATTCa < 2:533528/139‑1 (MQ=255) aaTCAATGCTGTCGTCCAGAAGATCAAGCGCCTGTTCCCTATCGTGGGCAACAATCACGTTGAAGCCTTCCATCTCGAGCAGCTCCTTTAATAGGGAAGTCAGCTCTCGGTCATCATCAACTAACAGGATTTTATTCAt > 2:218284/1‑139 (MQ=255) cAATGCTGTCGTCCAGAAGATCAAGCGCCTGTTCCCTATCGTGGGCAACAATCACGTTGAAGCCTTCCATCTCGAGCAGCTCCTTTAATAGGGAAGTCAGCTCTCGGTCATCATCAACTAACAGGATTTTATTCATTGt < 1:586401/139‑1 (MQ=255) tGCTGTCGTCCAGAAGATCAAGCGCCTGTTCCCTATCGTGGGCAACAATCACGTTGAAGCCTTCCATCTCGAGCAGCTCCTTTa < 2:409947/84‑1 (MQ=255) tGCTGTCGTCCAGAAGATCAAGCGCCTGTTCCCTATCGTGGGCAACAATCACGTTGAAGCCTTCCATCTCGAGCAGCTCCTTTa > 1:409947/1‑84 (MQ=255) gCTGTCGTCCAGAAGATCAAGCGCCTGTTCCCTATCGTGGGCAACAATCACGTTGAAGCCTTCCATCTCGa < 2:231070/71‑1 (MQ=255) gCTGTCGTCCAGAAGATCAAGCGCCTGTTCCCTATCGTGGGCAACAATCACGTTGAAGCCTTCCATCTCGa > 1:231070/1‑71 (MQ=255) gCTGTCGTCCAGAAGATCAAGCGCCTGTTCCCTATCGTGGGCAACAATCACGTTGAAGCCTTCCATCTCGAGCAGCTCCTTTAATAGGGAAGTCAg > 2:600368/1‑96 (MQ=255) gCTGTCGTCCAGAAGATCAAGCGCCTGTTCCCTATCGTGGGCAACAATCACGTTGAAGCCTTCCATCTCGAGCAGCTCCTTTAATAGGGAAGTCAg < 1:600368/96‑1 (MQ=255) tcgtcCAGAAGATCAAGCGCCTGTTCCCTATCGTGGGCAACAATCACGTTGAAGCCTTCCATCTCGAGCAGCTCCTTTAATAGGGAAGTCAGCTCTCGGTCATCATCAACTAACAGGATTTTATTCATTGTTTAAATAc > 2:452224/1‑139 (MQ=255) tcCAGAAGATCAAGCGCCTGTTCCCTATCGTGGGCAACAATCACGTTGAAGCCTTCCATCTCGAGCAGCTCCTTTAATAGGGAAGTCAGCTCTCGGTCATCATCAACTAACAGGATTTTATTCATTGTTTAAATACCTc > 1:91440/1‑139 (MQ=255) gaTCAAGCGCCTGTTCCCTATCGTGGGCAACAATCACGTTGAAGCCTTCCATCTCGAGCAGCTCCTTTAATAGGGAAGTCAGctct > 1:685937/1‑86 (MQ=255) gaTCAAGCGCCTGTTCCCTATCGTGGGCAACAATCACGTTGAAGCCTTCCATCTCGAGCAGCTCCTTTAATAGGGAAGTCAGctct < 2:685937/86‑1 (MQ=255) cAAGCGCCTGTTCCCTATCGTGGGCAACAATCACGTTGaa < 1:280270/40‑1 (MQ=255) cAAGCGCCTGTTCCCTATCGTGGGCAACAATCACGTTGaa > 2:280270/1‑40 (MQ=255) cAAGCGCCTGTTCCCTATCGTGGGCAACAATCACGTTGAAGCCTTCCAtc > 1:118173/1‑50 (MQ=255) cAAGCGCCTGTTCCCTATCGTGGGCAACAATCACGTTGAAGCCTTCCAtc < 2:118173/50‑1 (MQ=255) cAAGCGCCTGTTCCCTATCGTGGGCAACAATCACGTTGAAGCCTTCCATCTCGAGCAGCTCCTTTAATAGGGAAGTCAGctct < 2:987769/83‑1 (MQ=255) cAAGCGCCTGTTCCCTATCGTGGGCAACAATCACGTTGAAGCCTTCCATCTCGAGCAGCTCCTTTAATAGGGAAGTCAGctct > 1:987769/1‑83 (MQ=255) aaGCGCCTGTTCCCTATCGTGGGCAACAATCACGTTGAAGCCTTCCATCTCGAGCAGCTCCTTTAATAGGGAAGTCAGCTCTCGGtcatcatca > 1:723345/1‑94 (MQ=255) aaGCGCCTGTTCCCTATCGTGGGCAACAATCACGTTGAAGCCTTCCATCTCGAGCAGCTCCTTTAATAGGGAAGTCAGCTCTCGGtcatcatca < 2:723345/94‑1 (MQ=255) aGCGCCTGTTCCCTATCGTGGGCAACAATCACGTTGAAGCCTTCCATCTCGagca < 2:1028775/55‑1 (MQ=255) aGCGCCTGTTCCCTATCGTGGGCAACAATCACGTTGAAGCCTTCCATCTCGagca > 1:1028775/1‑55 (MQ=255) cgcCTGTTCCCTATCGTGGGCAACAATCACGTTGAAGCCTTCCATCTCGAGCAGCTCCTTTAATAGGGAAGTCAGCTCTCGGtcat < 2:492212/86‑1 (MQ=255) cgcCTGTTCCCTATCGTGGGCAACAATCACGTTGAAGCCTTCCATCTCGAGCAGCTCCTTTAATAGGGAAGTCAGCTCTCGGtcat > 1:492212/1‑86 (MQ=255) tGTTCCCTATCGTGGGCAACAATCACGTTGAAGCCTTCCATCTCGAGCAGCTCCTTTAATAGGGAAGTCAGCTCTCGGTCATCATCAACTAACAGGATTTTATTc < 2:436821/105‑1 (MQ=255) tGTTCCCTATCGTGGGCAACAATCACGTTGAAGCCTTCCATCTCGAGCAGCTCCTTTAATAGGGAAGTCAGCTCTCGGTCATCATCAACTAACAGGATTTTATTc > 1:436821/1‑105 (MQ=255) | ATGACAGGCGTCTGGTGTGTCTGGCGAAGTGCTTTTAATGTGTCGATACCATTTTTCTTCGGCATCATTACGTCAAGCAAAAGTAAATCAATGCTGTCGTCCAGAAGATCAAGCGCCTGTTCCCCATCGTGGGCAACAATCACGTTGAAGCCTTCCATCTCGAGCAGCTCCTTTAATAGGGAAGTCAGCTCTCGGTCATCATCAACTAACAGGATTTTATTCATTGTTTAAATACCTC > NC_000913/4105447‑4105684 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |