| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 4,507,463 | G→A | intergenic (+12/+3) | insO → / ← insI1 | pseudogene, IS911 transposase B,IS, phage, Tn, Transposon‑related functions, extrachromosomal, transposon related/IS30 transposase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,507,463 | 0 | G | A | 95.5% | 129.5 / ‑0.3 | 44 | intergenic (+12/+3) | insO/insI1 | pseudogene, IS911 transposase B,IS, phage, Tn, Transposon‑related functions, extrachromosomal, transposon related/IS30 transposase |
| Reads supporting (aligned to +/- strand): ref base G (0/0); major base A (21/21); minor base . (1/1); total (22/22) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.71e-01 | |||||||||||
CGTGATGAGCGTCAGGGCAAAACACCAAAAGCCTCTCCGATAACACCAGAACAAATCGAAATACGTAAGCTGAGGAAAAAGCTACAACGGATTGAAATGGAGAATGAAATATTAAAAAGGCTACTGTAGATTCAATCTGTCAATGCAACACCCCTTTCAATTATCTCTTTCGGTGTTTTGAACTTCAGTGTCTTTCTCGGTCTGTTGTTTAGCTGAGCAGCAACCAGATCTAGTTCATGTTGAGTATATTGGGCAAGA > NC_000913/4507335‑4507592 | cGTGATGAGCGTCAGGGCAAAACACCAAAAGCCTCTCCGATAACACCAGAACAAATCGAAATACGTAAGCTGAGGAAAAAGCTACAACGGATTGAAATGGAGAATGAAATATTAAAAAGGCTACTGTAAATTCAATCTg > 2:250955/1‑139 (MQ=255) gTGATGAGCGTCAGGGCAAAACACCAAAAGCCTCTCCGATAACACCAGAACAAATCGAAATAAGTAAGCTGAGGAAAAAGCTACAACGGATTGAAATGGAGAATGAAATATTAAAAAGGCTACTGTAAATTCAATCTGt < 2:811801/139‑1 (MQ=255) gCGTCAGGGCAAAACACCAAAAGCCTCTCCGATAACACCAGAACAAATCGAAATACGTAAGCTGAGGAAAAAGCTACAACGGATTGAAATGGAGAATGAAATATTAAAAAGGCTACTGTAAATTCAATCTGTCAATGCa < 1:590206/139‑1 (MQ=255) tCAGGGCAAAACACCAAAAGCCTCTCCGATAACACCAGAACAAATCGAAATACGTAAGCTGAGGAAAAAGCTACAACGGATTGAAATGGAGAATGAAATATTAAAAAGGCTACTGTAAATTCAATCTGTCa < 2:527915/131‑1 (MQ=255) tCAGGGCAAAACACCAAAAGCCTCTCCGATAACACCAGAACAAATCGAAATACGTAAGCTGAGGAAAAAGCTACAACGGATTGAAATGGAGAATGAAATATTAAAAAGGCTACTGTAAATTCAATCTGTCAATGCAaca < 1:250955/139‑1 (MQ=255) tCAGGGCAAAACACCAAAAGCCTCTCCGATAACACCAGAACAAATCGAAATACGTAAGCTGAGGAAAAAGCTACAACGGATTGAAATGGAGAATGAAATATTAAAAAGGATACTGTAAATTCAATCTGTCa > 1:527915/1‑131 (MQ=255) gCAAAACACCAAAAGCCTCTCCGATAACACCAGAACAAATCGAAATACGTAAGCTGAGGAAAAAGCTACAACGGATTGAAATGGAGAATGAAATATTAAAAAGGCTACTGTAAATTCAATCTGTCAATGCAACACCCCt < 2:489556/139‑1 (MQ=255) tcCGATAACACCAGAACAAATCGAAATACGTAAGCTGAGGAAAAAGCTACAACGGATTGAAATGGAGAATGAAATATTAAAAAGGCTACTGTAAATTCAATCTGTCAATGCAac < 1:1111926/114‑1 (MQ=255) tcCGATAACACCAGAACAAATCGAAATACGTAAGCTGAGGAAAAAGCTACAACGGATTGAAATGGAGAATGAAATATTAAAAAGGCTACTGTAAATTCAATCTGTCAATGCAac > 2:1111926/1‑114 (MQ=255) aaCAAATCGAAATACGTAAGCTGAGGAAAAAGCTACAACGGATTGAAATGGAGAATGAAATATTAAAAAGGCTACTGTAAATTCAATCTGTCAATGCAACACCCCTTTCAATTATCTCTTTCGGTGTTTTGAACTTCAg > 1:177580/1‑139 (MQ=255) aTCGAAATACGTAAGCTGAGGAAAAAGCTACAACGGATTGAAATGGAGAATGAAATATTAAAAAGGCTACTGTAAATTCaa < 2:316476/81‑1 (MQ=255) aTCGAAATACGTAAGCTGAGGAAAAAGCTACAACGGATTGAAATGGAGAATGAAATATTAAAAAGGCTACTGTAAATTCaa > 1:316476/1‑81 (MQ=255) aTCGAAATACGTAAGCTGAGGAAAAAGCTACAACGGATTGAAATGGAGAATGAAATATTAAAAAGGCTACTGTAAATTCAAt < 2:387245/82‑1 (MQ=255) aTCGAAATACGTAAGCTGAGGAAAAAGCTACAACGGATTGAAATGGAGAATGAAATATTAAAAAGGCTACTGTAAATTCAAt > 1:387245/1‑82 (MQ=255) aaaTACGTAAGCTGAGGAAAAAGCTACAACGGATTGAAATGGAGAATGAAATATTAAAAAGGCTACTGTAAATTCAATCTGTCAATGCAACACCCCTTTCAATTATCTCTTTCGGTGTTTTGAACTTCAGTGTCTTtct < 1:525299/139‑1 (MQ=255) aaaTACGTAAGCTGAGGAAAAAGCTACAACGGATTGAAACGGAGAATGCAAAATTAAAAAAGCTACTGTAAATTCAAACTTTACATGCAACACCCCTTTCAATTAGCTCTTTCGGTGTTTTGAACTTCAGTGTCTTtct < 2:563085/139‑1 (MQ=21) aaaTACGTAAGCTGAGCAAAAAGCTACAACGGATTGAAATGGAGAATGAAATATTAAAAATGCTACTGTAAATTCAATCTGTCAAAGCAACACCCCTTTCAATTATTTCTTTCGGTGTTTTGAACTTCAGTGTCTTtct < 2:1113344/139‑1 (MQ=25) aaTACGTAAGCTGAGGAAAAAGCTACAACGGATTGAAATGGAGAATGAAATATTAAAAAGGCTACTGTAAATTCAATCTGTCAATGCAACACCCCTTTCAATTATCTCTTTCGgtg < 2:736541/116‑1 (MQ=255) aaTACGTAAGCTGAGGAAAAAGCTACAACGGATTGAAATGGAGAATGAAATATTAAAAAGGCTACTGTAAATTCAATCTGTCAATGCAACACCCCTTTCAATTATCTCTTTCGgtg > 1:736541/1‑116 (MQ=255) aaTACGTAAGCTGAGGAAAAAGCTACAACGGATTGAAATGGAGAATGAAATATTAAAAAGGCTACTGTAAATTCAATCTGTCAATGCAACACCCCTTTCAATTATCTCTTTCGGTGTTTTGAACTTCAGTGTCTTtctc > 1:798273/1‑139 (MQ=255) cGTAAGCTGAGGAAAAAGCTACAACGGATTGAAATGGAGAATGAAATATTAAAAAGGCTACTGTAAATTCAATCTGTCAATGCAACACCCCTTTCAATTATCTCTTTCGGTGTTTTGAACTTCAGTGTCTTTCTCGGTc < 2:798273/139‑1 (MQ=255) aGGAAAAAGCTACAACGGATTGAAATGGAGAATGAAATATTAAAAAGGCTACTGTAAATTCAAt > 2:199402/1‑64 (MQ=255) aGGAAAAAGCTACAACGGATTGAAATGGAGAATGAAATATTAAAAAGGCTACTGTAAATTCAAt < 1:199402/64‑1 (MQ=255) aGGAAAAAGCTACAACGGATTGAAATGGAGAATGAAATATTAAAAAGGCTACTGTAAATTCAATCTGTCAATGCAaca < 1:85500/78‑1 (MQ=255) aGGAAAAAGCTACAACGGATTGAAATGGAGAATGAAATATTAAAAAGGCTACTGTAAATTCAATCTGTCAATGCAaca > 2:85500/1‑78 (MQ=255) aGGAAAAAGCTACAACGGATTGAAATGGAGAATGAAATATTAAAAAGGCTACTGTAAATTCAATCTGTCAATGCAACACCCCTTTCAATTATCTCTTTCGGTGTTTTGAACTTCAGTGTCTTTCTCGGTCTGTTGTTTa > 2:359494/1‑139 (MQ=255) ggAAAAAGCTACAACGGATTGAAATGGAGAATGAAATATTAAAAAGGCTACTGTAAATTCAATCTGTCAATGCAACACCCCTTTCAATTATCTCTTTCGGTGTTTTGAACTTCAGTGTCTTTCTCGGTCTGTTGTTTAg < 2:177580/139‑1 (MQ=255) tACAACGGATTGAAATGGAGAATGAAATATTAAAAAGGCTACTGTAAATTCAATCTGTCAATGCAACACCCCTTTCAATTATCTCTTTCGGTGTTTTGAACTTCAGTGTCTTTCTCGGTCTGTTGTTTAGCTGagcagc > 2:852163/1‑139 (MQ=255) gATTGAAATGGAGAATGAAATATTAAAAAGGCTACTGTAAATTCAATCTGTCAATGCAACACCCCTTTCAATTATCTCTTTCGGTGTTTTGAACTTCAGTGTCTTTCTCGGTCTGTTGTTTAGCTGAGCAGCAACCAGa > 1:744649/1‑139 (MQ=255) aTTGAAATGGAGAATGAAATATTAAAAAGGCTACTGTAAATTCAATCTGTCAATGCAACACCCCTTTCAATTATCTCTTTCGGTGTTTTGAACTTCAGTGTCTTTCTCGGTCTGTTGTTTAGCTGAGCAGCAACCAGAt < 1:837432/139‑1 (MQ=255) aTTGAAATGGAGAATGAAATATTAAAAAGGCTACTGTAAATTCAATCTGTCAATGCAACACCCCTTTCAATTATCTCTTTCGCTGTTTTGAACTTCAGTGTCTTTCTCGGTCTGTTGTTTAGCTGAGCAGCACCCAGAt > 1:297370/1‑139 (MQ=255) aaTGAAATATTAAAAAGGCTACTGTAAATTCAATCTGTCAATGCAACACCCCTTTCAATTATCTCTTTCGGTGTTTTGAACTTCAGTGTCTTTCTCGGTCTGTTGTTTAGCTGAGCAGCAACCAGATCTAGTTCATGtt > 1:981112/1‑139 (MQ=255) tGAAATATTAAAAAGGCTACTGTAAATTCAATCTGTCAATGCAaca < 1:838176/46‑1 (MQ=255) tGAAATATTAAAAAGGCTACTGTAAATTCAATCTGTCAATGCAaca > 2:838176/1‑46 (MQ=255) tGAAATATTAAAAAGGCTACTGTAAATTCAATCTGTCAATGCAACACCCCTTTCAATTATCTCTTTCGGTGTTTTGAACTTCAGTGTCTTTCTCGGTCTGTTGTTTAGCTGAGCAGCAACCAGATCTAGTTCATGTTGa > 1:960064/1‑139 (MQ=255) tGAAATATTAAAAAGGCTACTGTA‑ATTCAATCTGTCAATGCAACACCCCTTTCAATTATCTCTTTCGGTGTTTTGAACTTCAGTGTCTTTCTCGGTCTGTTGTTTAGCTGAGCAGCAACCAGATCTAGt < 2:796295/129‑1 (MQ=255) tGAAATATTAAAAAGGCTACTGTA‑ATTCAATCTGTCAATGCAACACCCCTTTCAATTATCTCTTTCGGTGTTTTGAACTTCAGTGTCTTTCTCGGTCTGTTGTTTAGCTGAGCAGCAACCAGATCTAGt > 1:796295/1‑129 (MQ=255) tatTAAAAAGGCTACTGTAAATTCAATCTGTCAATGCAACACCCCTTTCAATTATCTCTTTCGGTGTTTTGAACTTCAGTGTCTTTCTCGGTCTGTTGTTTAGCTGAGCAGCAACCAGATCTAGTTCATGTTGAGtata > 2:283864/1‑139 (MQ=38) tAAAAAGGCTACTGTAAATTCAATCTGTCAATGCAACACCCCTTTCAATTATCTCTTTCGGTGTTTTGAACTTCAGTGTCTTTCTCg < 2:580182/87‑1 (MQ=255) tAAAAAGGCTACTGTAAATTCAATCTGTCAATGCAACACCCCTTTCAATTATCTCTTTCGGTGTTTTGAACTTCAGTGTCTTTCTCg > 1:580182/1‑87 (MQ=255) aaaaGGCTACTGTAAATTCAATCTGTCAATGCAACACCCCTTTCAATTATCTCTTTCGGTGTTTTGAACTTCAGTGTCTTTCTCGGTCTGTTGTTTAGCTGAGCAGCAACCAGATCTAGTTCATGTTGAGTATATTggg < 2:744649/139‑1 (MQ=21) gCTACTGTAAATTCAATCTGTCAATGCAACACCCCTTTCAATTATCTCTTTCGGTGTTTTGAACTTCAGTGTCTTTCTCGGTCTGTTGTTTAGCTGagcag < 2:1095657/101‑1 (MQ=17) gCTACTGTAAATTCAATCTGTCAATGCAACACCCCTTTCAATTATCTCTTTCGGTGTTTTGAACTTCAGTGTCTTTCTCGGTCTGTTGTTTAGCTGagcag > 1:1095657/1‑101 (MQ=17) gCTACTGTAAATTCAATCTGTCAATGCAACACCCCTTTCAATTATCTCTTTCGGTGTTTTGAACTTCAGTGTCTTTCTCGGTCTGTTGTTTAGCTGAGCAGCAACCAGATCTAGTTCATGTTGAGTATATTGGGCAAGa > 2:643279/1‑139 (MQ=18) | CGTGATGAGCGTCAGGGCAAAACACCAAAAGCCTCTCCGATAACACCAGAACAAATCGAAATACGTAAGCTGAGGAAAAAGCTACAACGGATTGAAATGGAGAATGAAATATTAAAAAGGCTACTGTAGATTCAATCTGTCAATGCAACACCCCTTTCAATTATCTCTTTCGGTGTTTTGAACTTCAGTGTCTTTCTCGGTCTGTTGTTTAGCTGAGCAGCAACCAGATCTAGTTCATGTTGAGTATATTGGGCAAGA > NC_000913/4507335‑4507592 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |