Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 2,786,746 Δ1 bp pseudogene (350/2253 nt) ygaQ → uncharacterized protein, putative enzyme

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009132,786,7460C.100.0% 261.9 / NA 64pseudogene (350/2253 nt)ygaQuncharacterized protein, putative enzyme
Reads supporting (aligned to +/- strand):  ref base C (0/0);  new base . (32/32);  total (32/32)

CTGTTAAAAAACGATTATAAAATTTCCCTTTCTCCAGATACAACTTACCGAGAGTTGAATAAAGCAGCACAGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGATACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATCTGACAAACCTTCCCCAAAAGATAAATATGTTGCATATGC  >  NC_000913/2786613‑2786857
                                                                                                                                     |                                                                                                               
cTGTTAAAAAACGATTATAAAATTTCCCTTTCTCCAGATACAACTTACCGAGAGTTGAATAAAGCAGCACAGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAAGTTTATCAACGAGATAAATGAt                                                                                                           <  2:223348/139‑1 (MQ=255)
        aaaCGATTATAAAATTTCCCTTTCTCCAGATACAACTTACCGAGAGTTGAATAAAGCAGCACAGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAAGTTTATCAACGAGATAAATGATTGAAagag                                                                                                   <  1:960599/139‑1 (MQ=255)
             aTTATAAAATTTCCCTTTCTCCAGATACAACTTACCGAGAGTTGAATAAAGCAGCACAGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAAGTTTATCAACGAGATAAATGATTGaaa                                                                                                      <  1:1176056/131‑1 (MQ=255)
             aTTATAAAATTTCCCTTTCTCCAGATACAACTTACCGAGAGTTGAATAAAGCAGCACAGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAAGTTTATCAACGAGATAAATGATTGaaa                                                                                                      >  2:1176056/1‑131 (MQ=255)
                            tttCTCCAGATACAACTTACCGAGAGTTGAATAAAGCAGCACAGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAAGTTTATCAACGAGATAAATGATTGAAAGAGGTGATAACAGCGGTGTTTAt                                                                               <  2:590876/139‑1 (MQ=255)
                                tcCAGATACAACTTACCGAGAGTTGAATAAAGCAGCACAGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAAGTTTATCAACGAGATAAATGATTGaaa                                                                                                      >  1:1378654/1‑112 (MQ=255)
                                tcCAGATACAACTTACCGAGAGTTGAATAAAGCAGCACAGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAAGTTTATCAACGAGATAAATGATTGaaa                                                                                                      <  2:1378654/112‑1 (MQ=255)
                                     aTACAACTTACCGAGAGTTGAATAAAGCAGCACAGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAAGTTTATCAACGAGATAAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTa                                                                          <  2:826115/135‑1 (MQ=255)
                                     aTACAACTTACCGAGAGTTGAATAAAGCAGCACAGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAAGTTTATCAACGAGATAAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTa                                                                          >  1:826115/1‑135 (MQ=255)
                                          aCTTACCGAGAGTTGAATAAAGCAGCACAGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAAGTTTATCAACGAGATAAATGATTGAAaga                                                                                                    <  1:1654113/104‑1 (MQ=255)
                                          aCTTACCGAGAGTTGAATAAAGCAGCACAGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAAGTTTATCAACGAGATAAATGATTGAAaga                                                                                                    >  2:1654113/1‑104 (MQ=255)
                                          aCTTACCGAGAGTTGAATAAAGCAGCACAGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAAGTTTATCAACGAGATAAATGATTGAAAGAGGTGATAACAGCGgtg                                                                                    >  1:681658/1‑120 (MQ=255)
                                          aCTTACCGAGAGTTGAATAAAGCAGCACAGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAAGTTTATCAACGAGATAAATGATTGAAAGAGGTGATAACAGCGgtg                                                                                    <  2:681658/120‑1 (MQ=255)
                                          aCTTACCGAGAGTTGAATAAAGCAGCACAGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAAGTTTATCAACGAGATAAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGc                                                                 >  2:655764/1‑139 (MQ=255)
                                          aCTTACCGAGAGTTGAATAAAGCAGCACAGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAAGTTTATCAACGAGATAAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGc                                                                 >  2:1448380/1‑139 (MQ=255)
                                            ttACCGAGAGTTGAATAAAGCAGCACAGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAAGTTTATCAACGAGATAAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTg                                                               >  1:363671/1‑139 (MQ=255)
                                            ttACCGAGAGTTGAATAAAGCAGCACAGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAAGTTTATCAACGAGATAAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTg                                                               <  2:363671/139‑1 (MQ=255)
                                              aCCGAGAGTTGAATAAAGCAGCACAGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAAGTTTATCAACGAGATAAATGAt                                                                                                           >  2:739258/1‑93 (MQ=255)
                                              aCCGAGAGTTGAATAAAGCAGCACAGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAAGTTTATCAACGAGATAAATGAt                                                                                                           <  1:739258/93‑1 (MQ=255)
                                              aCCGAGAGTTGAATAAAGCAGCACAGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAAGTTTATCAACGAGATAAATGATTGAAAGAGGTGATAACAg                                                                                         >  2:1409329/1‑111 (MQ=255)
                                              aCCGAGAGTTGAATAAAGCAGCACAGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAAGTTTATCAACGAGATAAATGATTGAAAGAGGTGATAACAg                                                                                         <  1:1409329/111‑1 (MQ=255)
                                              aCCGAGAGTTGAATAAAGCAGCACAGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAAGTTTATCAACGAGATAAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATgg                                                                       <  2:1458468/129‑1 (MQ=255)
                                              aCCGAGAGTTGAATAAAGCAGCACAGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAAGTTTATCAACGAGATAAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATgg                                                                       >  1:1458468/1‑129 (MQ=255)
                                              aCCGAGAGTTGAATAAAGCAGCACAGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAAGTTTATCAACGAGATAAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGaa                                                             >  1:382995/1‑139 (MQ=255)
                                               ccGAGAGTTGAATAAAGCGGCACAGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAAGTTTATCAACGAGATAAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAAc                                                            >  2:36674/1‑139 (MQ=255)
                                               ccGAGAGTTGAATAAAGCAGCACAGTGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAAGTTTATCAACGAGATAAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAAc                                                            >  2:95508/1‑139 (MQ=255)
                                               ccGAGAGTTGAATAAAGCAGCACAGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAAGTTTATCAACGAGATAAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAAc                                                            >  2:824663/1‑139 (MQ=255)
                                                 gagaGTTGAATAAAGCAGCACAGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAAGTTTATCAACGAGATAAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACAt                                                          <  1:824663/139‑1 (MQ=255)
                                                      ttGAATAAAGCAGCACAGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAAGTTTATCAACGAGATAAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCAc                                                     >  1:706968/1‑139 (MQ=255)
                                                      ttGAATAAAGCAGCACAGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAAGTTTATCAACGAGATAAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCAc                                                     <  2:706968/139‑1 (MQ=255)
                                                           tAAAGCAGCACAGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAAGTTTATCAACGAGATAAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCcaca                                                <  1:1448380/139‑1 (MQ=255)
                                                                cagcaCAGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAAGTTTATCAACGAGATAAATGATTGAAAGAGGTGATAACAGCGGTGttt                                                                                 >  2:577395/1‑101 (MQ=255)
                                                                cagcaCAGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAAGTTTATCAACGAGATAAATGATTGAAAGAGGTGATAACAGCGGTGttt                                                                                 <  1:577395/101‑1 (MQ=255)
                                                                   cacaGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAAGTTTATCAACGAGATAAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATCt                                        >  2:191155/1‑139 (MQ=255)
                                                                   cacaGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAAGTTTATCAACGAGATAAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATCt                                        >  1:583351/1‑139 (MQ=255)
                                                                        cGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAAGTTTATCAACGAGATAAATGATTGAAAGAGGTGATAACAGCg                                                                                       >  1:812077/1‑87 (MQ=255)
                                                                        cGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAAGTTTATCAACGAGATAAATGATTGAAAGAGGTGATAACAGCg                                                                                       <  2:812077/87‑1 (MQ=255)
                                                                        cGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAAGTTTATCAACGAGATAAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATCTGACaa                                   >  1:633314/1‑139 (MQ=255)
                                                                        cGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAAGTTTATCAACGAGATAAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATCTGACaa                                   >  1:1646257/1‑139 (MQ=255)
                                                                             cATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAAGTTTATCAACGAGATAAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATCTGACAAACCtt                              >  1:1402027/1‑139 (MQ=255)
                                                                             cATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAAGTTTATCAACGAGATAAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATCTGACAAACCtt                              <  1:655764/139‑1 (MQ=255)
                                                                                  cAGCGCCAGACAGGATAGGAGAAAGAAAAACATAAGTTTATCAACGAGATAAATGATTGaaa                                                                                                      <  1:72913/62‑1 (MQ=255)
                                                                                  cAGCGCCAGACAGGATAGGAGAAAGAAAAACATAAGTTTATCAACGAGATAAATGATTGaaa                                                                                                      >  2:72913/1‑62 (MQ=255)
                                                                                   aGCGCCAGACAGGATAGGAGAAAGAAAAACATAAGTTTATCAACGAGATAAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATCTGACAAACCTTCCCCaa                        <  2:382995/139‑1 (MQ=255)
                                                                                     cgcCAGACAGGATAGGAGAAAGAAAAACATAAGTTTATCAACGAGATAAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATCTGACAAACCTTCCCCa                         <  2:268525/136‑1 (MQ=255)
                                                                                     cgcCAGACAGGATAGGAGAAAGAAAAACATAAGTTTATCAACGAGATAAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATCTGACAAACCTTCCCCa                         >  1:268525/1‑136 (MQ=255)
                                                                                              ggATAGGAGAAAGAAAAACATAAGTTTATCAACGAGATAAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATCTGACAAACCTTCCCCAAAAGATAAatat             <  1:191155/139‑1 (MQ=255)
                                                                                               gATAGGAGAAAGAAAAACATAAGTTTATCAACGAGATAAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATCTGACAAACCTTCCCCAAAAGATAAATATg            <  2:1402027/139‑1 (MQ=255)
                                                                                                    gagaAAGAAAAACATAAGTTTATCAACGAGATAAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATCTGACAAACCTTCCCCAAAAGATaa                 >  1:64620/1‑129 (MQ=255)
                                                                                                    gagaAAGAAAAACATAAGTTTATCAACGAGATAAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATCTGACAAACCTTCCCCAAAAGATaa                 <  2:64620/129‑1 (MQ=255)
                                                                                                    gagaAAGAAAAACATAAGTTTATCAACGAGATAAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATCTGACAAACCTTCCCCAAAAGATAAATATGTTGc        >  2:659745/1‑138 (MQ=255)
                                                                                                    gagaAAGAAAAACATAAGTTTATCAACGAGATAAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATCTGACAAACCTTCCCCAAAAGATAAATATGTTGc        <  1:659745/138‑1 (MQ=255)
                                                                                                      gaaagaaaAACATAAGTTTATCAACGAGATAAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATCTGACAAACCTTCCCCAAAAGATAAATATGTTGCata     <  2:633314/139‑1 (MQ=255)
                                                                                                      gaaagaaaAACATAAGTTTATCAACGAGATAAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATCTGACAAACCTTCCCCAAAAGATAAATATGTTGCata     <  1:95508/139‑1 (MQ=255)
                                                                                                      gaaagaaaAACATAAGTTTATCAACGAGATAAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATCTGACAAACCTTCCCCAAAAGATAAATATGTTGCata     <  2:1646257/139‑1 (MQ=255)
                                                                                                       aaagaaaAACATAAGTTTATCAACGAGATAAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATCTGACAAACCTTCCCCAAAAGATAAATATGTTGCata     <  1:291924/138‑1 (MQ=255)
                                                                                                       aaagaaaAACATAAGTTTATCAACGAGATAAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATCTGACAAACCTTCCCCAAAAGATAAATATGTTGCata     >  2:291924/1‑138 (MQ=255)
                                                                                                         agaaaAACATAAGTTTATCAACGAGATAAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTg                                                                  <  2:382421/75‑1 (MQ=255)
                                                                                                         agaaaAACATAAGTTTATCAACGAGATAAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTg                                                                  >  1:382421/1‑75 (MQ=255)
                                                                                                         agaaaAACATAAGTTTATCAACGAGATAAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATCTGACAAACCTTCCCCAAAAGATAAATATGTTGCATATGc  >  1:133416/1‑139 (MQ=255)
                                                                                                                 ataagTTTATCAACGAGATAAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAAc                                                            <  1:204114/69‑1 (MQ=255)
                                                                                                                 ataagTTTATCAACGAGATAAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAAc                                                            >  2:204114/5‑73 (MQ=255)
                                                                                                                               gagaTAAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATCTGACAAACCTTCCCCa                         <  2:546668/94‑1 (MQ=255)
                                                                                                                               gagaTAAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATCTGACAAACCTTCCCCa                         >  1:546668/1‑94 (MQ=255)
                                                                                                                                     |                                                                                                               
CTGTTAAAAAACGATTATAAAATTTCCCTTTCTCCAGATACAACTTACCGAGAGTTGAATAAAGCAGCACAGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGATACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATCTGACAAACCTTCCCCAAAAGATAAATATGTTGCATATGC  >  NC_000913/2786613‑2786857

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: