Predicted mutation | ||||||
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evidence | seq id | position | mutation | annotation | gene | description |
RA | NC_000913 | 1,551,573 | A→G | N79S (AAC→AGC) | fdnI → | formate dehydrogenase‑N, cytochrome B556 (gamma) subunit, nitrate‑inducible |
Read alignment evidence... | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_000913 | 1,551,573 | 0 | A | G | 100.0% | 296.7 / NA | 81 | N79S (AAC→AGC) | fdnI | formate dehydrogenase‑N, cytochrome B556 (gamma) subunit, nitrate‑inducible |
Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (38/43); total (38/43) |
CGTTCTTCTTCCCGACGCTGCAATGGCTGACGCAAACCTTCGGTACGCCGCAGATGGGACGCATTTTGCACCCGTTCTTCGGCATTGCGATTTTCGTCGCACTGATGTTTATGTTTGTGCGTTTTGTGCATCACAACATCCCGGATAAGAAAGATATTCCGTGGCTGTTGAACATTGTCGAAGTATTGAAAGGCAATGAGCATAAAGTGGCGGATGTCGGTAAGTACAACGCCGGGCAAAAGATGATGTTCTGGTCGATCATGAGCATGAT > NC_000913/1551438‑1551708 | cGTTCTTCTTCCCGACGCTGCAATGGCTGACGCAAACCTTCGGTACGCCGCAGATGGGACGCATTTTGCACCCGTTCTTCGGCATTGCGATTTTCGTCGCACTGATGTTTATGTTTGTGCGTTTTGTGCATCACAGCAt > 2:995568/1‑139 (MQ=255) gTTCTTCTTCCCGACGCTGCAATGGCTGACGCAAACCTTCGGTACGCCGCAGATGGGACGCATTTTGCACCCGTTCTTCGGCATTGCGATATTCGTCGCACTGATGTTTATGTTTGTGCGTGTTGTGCATCACAGCATc < 1:497438/139‑1 (MQ=255) cttcCCGACGCTGCAGTGGCTGACGCAAACCTTCGGTACGCCGCAGATGGGACGCATTTTGCACCCGTTCTTCGGCATTGCGATTTTCGTCGCACTGATGTTTATGTTTGTGCGTTTTGTGCATCACAGCATCCCGGAt > 2:1132827/1‑139 (MQ=255) cttcCCGACGCTGCAATGGCTGACGCAAACCTTCGGTACGCCGCAGATGGGACGCATTTTGCACCCGTTCTTCGGCATTGCGATTTTCGTCGCACTGATGTTTATGTTTGTGCGTTTTGTGCATCACAGCATCCCGGAt < 2:106762/139‑1 (MQ=255) aCGCTGCAATGGCTGACGCAAACCTTCGGTACGCCGCAGATGGGACGCATTTTGCACCCGTTCTTCGGCATTGCGATTTTCGTCGCACTGATGTTTATGTTTGTGCGTTTTGTGCATCACAGCATCCCGGATaagaaag < 2:780657/139‑1 (MQ=255) cTGCAATGGCTGACGCAAACCTTCGGTACGCCGCAGATGGGACGCATTTTGCACCCGTTCTTCGGCATTGCGATTTTCGTCGCACTGATGTTTATGTTTGTGCGTTTTGTGCATCACAGAATCCCGGATAAGAAAGata > 2:1468069/1‑139 (MQ=255) tGCAATGGCTGACGCAAACCTTCGGTACGCCGCAGATGGGACGCATTTTGCACCCGTTCTTCGGCATTGCGATTTTCGTCGCACTGATGTTTATGTTTGTGCGTTTTGTGCATCACAGCATCCCGGATAAGAAAGatat > 1:522491/1‑139 (MQ=255) tGGCTGACGCAAACCTTCGGTACGCCGCAGATGGGACGCATTTTGCACCCGTTCTTCGGCATTGCGATTTTCGTCGCACTGATGTTTATGTTTGTGCGTTTTGTGCATCACAGCATCCCGGATAAGAAAGATATTCCGt < 1:417952/139‑1 (MQ=255) tGGCTGACGCAAACCTTCGGTACGCCGCAGATGGGACGCACTTTGCACCCGTTCTTCGGCATTGCGATTTTCGTCGCACTGATGTTTATGTTTGTTCGTTTCGTGCATCACAGCATCCCGGATAAGAAAGATATTCCGt < 1:1132827/139‑1 (MQ=255) cTGACGCAAACCTTCGGTACGCCGCAGATGGGACGCATTTTGCACCCGTTCTTCGGCATTGCGATTTTCGTCGCACTGATGTTTATGTTTGTGCGTTTTGTGCATCACAGCATCCCGGATaa < 1:261121/122‑1 (MQ=255) cTGACGCAAACCTTCGGTACGCCGCAGATGGGACGCATTTTGCACCCGTTCTTCGGCATTGCGATTTTCGTCGCACTGATGTTTATGTTTGTGCGTTTTGTGCATCACAGCATCCCGGATaa > 2:261121/1‑122 (MQ=255) gACGCAAACCTTCGGTACGCCGCAGATGGGACGCATTTTGCACCCGTTCTTCGGCATTGCGATTTTCGTCGCACTGATGTTTATGTTTGTGCGTTTTGTGCATCACAGCATCCCGGATAAGAAAGATATTCCGt < 2:1181343/134‑1 (MQ=255) gACGCAAACCTTCGGTACGCCGCAGATGGGACGCATTTTGCACCCGTTCTTCGGCATTGCGATTTTCGTCGCACTGATGTTTATGTTTGTGCGTTTTGTGCATCACAGCATCCCGGATAAGAAAGATATTCCGt > 1:1181343/1‑134 (MQ=255) gACGCAAACCTTCGGTACGCCGCAGATGGGACGCATTTTGCACCCGTTCTTCGGCATTGCGATTTTCGTCGCACTGATGTTTATGTTTGTGCGTTTTGTGCATCACAGCATCCCGGATAAGAAAGATATTCCGTGGCTg > 2:277826/1‑139 (MQ=255) gACGCAAACCTTCGGTACGCCGCAGATGGGACGCATTTTGCACCCGTTCTTCGGCATTGCGATTTTCGTCGCACTGATGTTTATGTTTGTGCGTTTTGTGCATCACAGCATCCCGGATAAGAAAGATATACCGTGGCTg < 2:522491/139‑1 (MQ=255) cGCAAACCTTCGGTACGCCGCAGATGGGACGCATTTTGCACCCGTTCTTCGGCATTGCGATTTTCGTCGCACTGATGTTTATGTTTGTGCGTTTTGTGCATCACAGCATCCCGGATaaga > 1:1673720/1‑120 (MQ=255) cGCAAACCTTCGGTACGCCGCAGATGGGACGCATTTTGCACCCGTTCTTCGGCATTGCGATTTTCGTCGCACTGATGTTTATGTTTGTGCGTTTTGTGCATCACAGCATCCCGGATaaga < 2:1673720/120‑1 (MQ=255) cGCAAACCTTCGGTACGCCGCAGATGGGACGCATTTTGCACCCGTTCTTCGGCATTGCGATTTTCGTCGCACTGATGTTTATGTTTGTGCGTTTTGTGCATCACAGCATCCCGGATAAGAAAGATATTCCGTgg < 2:929346/134‑1 (MQ=255) cGCAAACCTTCGGTACGCCGCAGATGGGACGCATTTTGCACCCGTTCTTCGGCATTGCGATTTTCGTCGCACTGATGTTTATGTTTGTGCGTTTTGTGCATCACAGCATCCCGGATAAGAAAGATATTCCGTgg > 1:929346/1‑134 (MQ=255) cGCAAACCTTCGGTACGCCGCAGATGGGACGCATTTTGCACCCGTTCTTCGGCATTGCGATTTTCGTCGCACTGATGTTTATGTTTGTGCGTTTTGTGCATCACAGCATCCCGGATAAGAAAGATATTCCGTGGCTGtt < 1:137577/139‑1 (MQ=255) aCCTTCGGTACGCCGCAGATGGGACGCATTTTGCACCCGTTCTTCGGCATTGCGATTTTCGTCGCACTGATGTTTATGTTTGTGCGTTTTGTGCATCACAGCATCCCGGATAAGAAAGata < 2:948903/121‑1 (MQ=255) aCCTTCGGTACGCCGCAGATGGGACGCATTTTGCACCCGTTCTTCGGCATTGCGATTTTCGTCGCACTGATGTTTATGTTTGTGCGTTTTGTGCATCACAGCATCCCGGATAAGAAAGata > 1:948903/1‑121 (MQ=255) cGGTACGCCGCAGATGGGACGCATTTTGCACCCGTTCTTCGGCATTGCGATTTTCGTCGCACTGATGTTTATGTTTGTGCGTTTTGTGCATCACAGCATCCCGGATaaga < 2:1679953/110‑1 (MQ=255) cGGTACGCCGCAGATGGGACGCATTTTGCACCCGTTCTTCGGCATTGCGATTTTCGTCGCACTGATGTTTATGTTTGTGCGTTTTGTGCATCACAGCATCCCGGATaaga > 1:1679953/1‑110 (MQ=255) ggTACGCCGCAGATGGGACGCATTTTGCACCCGTTCTTCGGCATTGCGATTTTCGTCGCACTGATGTTTATGTTTGTGCGTTTTGTGCATCACAGCATCCCGGATAAGAAAGATATTCCGTGGCTGTTGAACATTGTCg < 1:552009/139‑1 (MQ=255) cgcAGATGGGACGCATTTTGCACCCGTTCTTCGGCATTGCGATTTTCGTCGCACTGATGTTTATGTTTGTGCGTTTTGTGCATCACAGCATCCCGGATAAGAAAGATATTCCGTGGCTGTTGAACATTGTCGAAGTAtt > 1:552492/1‑139 (MQ=255) cAGATGGGACGCATTTTGCACCCGTTCTTCGGCATTGCGATTTTCGTCGCACTGATGTTTATGTTTGTGCGTTTTGTGCATCACAGCATCCCGGATAAGAAAGATATTCCGTGGCTGTTGAACATTGTCg > 2:1299625/1‑130 (MQ=255) cAGATGGGACGCATTTTGCACCCGTTCTTCGGCATTGCGATTTTCGTCGCACTGATGTTTATGTTTGTGCGTTTTGTGCATCACAGCATCCCGGATAAGAAAGATATTCCGTGGCTGTTGAACATTGTCg < 1:1299625/130‑1 (MQ=255) gATGGGACGCATTTTGCACCCGTTCTTCGGCATTGCGATTTTCGTCGCACTGATGTTTATGTTTGTGCGTTTTGTGCATCACAGCATCCCGGATAAGAAAGATATTCCGTGGCTGTTGAACATTGTCGAAGTATTGaaa > 1:194329/1‑139 (MQ=255) ggACGCATTTTGCACCCGTTCTTCGGCATTGCGATTTTCGTCGCACTGATGTTTATGTTTGTGCGTTTTGTGCATCACAGCATCCCGGATAAGAAAGATATTCCGTGGCTg > 1:862494/1‑111 (MQ=255) ggACGCATTTTGCACCCGTTCTTCGGCATTGCGATTTTCGTCGCACTGATGTTTATGTTTGTGCGTTTTGTGCATCACAGCATCCCGGATAAGAAAGATATTCCGTGGCTg < 2:862494/111‑1 (MQ=255) aCGCATTTTGCACCCGTTCTTCGGCATTGCGATTTTCGTCGCACTGATGTTTATGTTTGTGCGTTTTGTGCATCACAGCATCCCGGAt < 2:1278520/88‑1 (MQ=255) aCGCATTTTGCACCCGTTCTTCGGCATTGCGATTTTCGTCGCACTGATGTTTATGTTTGTGCGTTTTGTGCATCACAGCATCCCGGAt > 1:1278520/1‑88 (MQ=255) aCGCATTTTGCACCCGTTCTTCGGCATTGCGATTTTCGTCGCACTGATGTTTATGTTTGTGCGTTTTGTGCATCACAGCATCCCGGATAAGAAAGATATTCCGTGGCTGTTGAACATTGTCGAAGTATTGAAAGGCAAt < 1:1424103/139‑1 (MQ=255) cGTTCTTCGGCATTGCGATTTTCGTCGCACTGATGTTTATGTTTGTGCGTTTTGTGCATCACAGCATCCCGGATAAGAAAGATATTCCGTgg < 1:905745/92‑1 (MQ=255) cGTTCTTCGGCATTGCGATTTTCGTCGCACTGATGTTTATGTTTGTGCGTTTTGTGCATCACAGCATCCCGGATAAGAAAGATATTCCGTgg > 2:905745/1‑92 (MQ=255) cGTTCTTCGGCATTGCGATTTTCGTCGCACTGATGTTTATGTTTGTGCGTTTTGTGCATCACAGCATCCCGGATAAGAAAGATATTCCGTGGCTGTTGAACATTGTCGAAGTATTGAAAGGCAAt < 1:698790/125‑1 (MQ=255) cGTTCTTCGGCATTGCGATTTTCGTCGCACTGATGTTTATGTTTGTGCGTTTTGTGCATCACAGCATCCCGGATAAGAAAGATATTCCGTGGCTGTTGAACATTGTCGAAGTATTGAAAGGCAAt > 2:698790/1‑125 (MQ=255) ttcttcGGCATTGCGATTTTCGTCGCACTGATGTTTATGTTTGTGCGTTTTGTGCATCACAGCATCCCGGATAAGAAAGATATTCCGTGGCTGTTGAACATTGTCGAAGTATTGAAAGGCAATGAGCATAAAGTGGCgg > 2:1585807/1‑139 (MQ=255) tGCGATTTTCGTCGCACTGATGTTTATGTTTGTGCGTTTTGTGCATCACAGCATCCCGGAt < 2:976504/61‑1 (MQ=255) tGCGATTTTCGTCGCACTGATGTTTATGTTTGTGCGTTTTGTGCATCACAGCATCCCGGAt > 1:976504/1‑61 (MQ=255) tGCGATTTTCGTCGCACTGATGTTTATGTTTGTGCGTTTTGTGCATCACAGCATCCCGGATAAGAAAGATATTCCGt > 2:1633117/1‑77 (MQ=255) tGCGATTTTCGTCGCACTGATGTTTATGTTTGTGCGTTTTGTGCATCACAGCATCCCGGATAAGAAAGATATTCCGt < 1:1633117/77‑1 (MQ=255) tGCGATTTTCGTCGCACTGATGTTTATGTTTGTGCGTTTTGTGCATCACAGCATCCCGGATAAGAAAGATATTCCGTgg < 1:571947/79‑1 (MQ=255) tGCGATTTTCGTCGCACTGATGTTTATGTTTGTGCGTTTTGTGCATCACAGCATCCCGGATAAGAAAGATATTCCGTgg > 2:571947/1‑79 (MQ=255) tGCGATTTTCGTCGCACTGATGTTTATGTTTGTGCGTTTTGTGCATCACAGCATCCCGGATAAGAAAGATATTCCGTGGCTGTTGAACATTGt < 2:1510982/93‑1 (MQ=255) tGCGATTTTCGTCGCACTGATGTTTATGTTTGTGCGTTTTGTGCATCACAGCATCCCGGATAAGAAAGATATTCCGTGGCTGTTGAACATTGt > 1:1510982/1‑93 (MQ=255) tGCGATTTTCGTCGCACTGATGTTTATGTTTGTGCGTTTTGTGCATCACAGCATCCCGGATAAGAAAGATATTCCGTGGCTGTTGAACATTGTCGAAGTATTGAAAGGCa > 1:1109928/1‑110 (MQ=255) tGCGATTTTCGTCGCACTGATGTTTATGTTTGTGCGTTTTGTGCATCACAGCATCCCGGATAAGAAAGATATTCCGTGGCTGTTGAACATTGTCGAAGTATTGAAAGGCa < 2:1109928/110‑1 (MQ=255) tGCGATTTTCGTCGCACTGATGTTTATGTTTGTGCGTTTTGTGCATCACAGCATCCCGGATAAGAAAGATATTCCGTGGCTGTTGAACATTGTCGAAGTATTGAAAGGCAATGAGCATAAAGTGGCGGATGTCGGt < 2:930049/136‑1 (MQ=255) tGCGATTTTCGTCGCACTGATGTTTATGTTTGTGCGTTTTGTGCATCACAGCATCCCGGATAAGAAAGATATTCCGTGGCTGTTGAACATTGTCGAAGTATTGAAAGGCAATGAGCATAAAGTGGCGGATGTCGGt > 1:930049/1‑136 (MQ=255) ttCGTCGCACTGATGTTTATGTTTGTGCGTTTTGTGCATCACAGCATCCCGGATAAGAAAGATATTCCGTGGCTGTTGAACATTGTCGAAGTATTGAAAGGCAATGAGCATAAAGTGGCGGATGTCGGTAAGTACAACg < 2:1006500/139‑1 (MQ=255) ttatgtttGTGCGTTTTGTGCATCACAGCATCCCGGATAAGAAAGATATTCCGTGGCTGTTGAACATTGTCGAAGTATTGAAAGGCAATGAGCATAAAGTGGCGGATGTCGGTAAGTACAACGCCGGGCAAAAgatgat < 1:277826/139‑1 (MQ=255) ttGTGCGTTTTGTGCATCACAGCATCCCGGATAAGAAAGATATTCCGt < 1:1286595/48‑1 (MQ=255) ttGTGCGTTTTGTGCATCACAGCATCCCGGATAAGAAAGATATTCCGt > 2:1286595/1‑48 (MQ=255) ttGTGCGTTTTGTGCATCACAGCATCCCGGATAAGAAAGATATTCCGTgg < 2:1383308/50‑1 (MQ=255) ttGTGCGTTTTGTGCATCACAGCATCCCGGATAAGAAAGATATTCCGTgg > 1:1383308/1‑50 (MQ=255) ttGTGCGTTTTGTGCATCACAGCATCCCGGATAAGAAAGATATTCCGTGGCTGTTGAACATTGTCGAAGTATTGAAAGGCAAt > 2:777888/1‑83 (MQ=255) ttGTGCGTTTTGTGCATCACAGCATCCCGGATAAGAAAGATATTCCGTGGCTGTTGAACATTGTCGAAGTATTGAAAGGCAAt < 1:777888/83‑1 (MQ=255) ttGTGCGTTTTGTGCATCACAGCATCCCGGATAAGAAAGATATTCCGTGGCTGTTGAACATTGTCGAAGTATTGAAAGGCAATGAGCATAAAGTGGCGGATGTCGGTAAGTACAACGCCGGGCAAAAGATGATGtt < 1:618591/136‑1 (MQ=255) ttGTGCGTTTTGTGCATCACAGCATCCCGGATAAGAAAGATATTCCGTGGCTGTTGAACATTGTCGAAGTATTGAAAGGCAATGAGCATAAAGTGGCGGATGTCGGTAAGTACAACGCCGGGCAAAAGATGATGtt > 2:618591/1‑136 (MQ=255) tgtgCGTTTTGTGCATCACAGCATCCCGGATAAGAAAGATATTCCGTGGCTGTTGAACATTGTCg < 2:344816/65‑1 (MQ=255) tgtgCGTTTTGTGCATCACAGCATCCCGGATAAGAAAGATATTCCGTGGCTGTTGAACATTGTCg > 1:344816/1‑65 (MQ=255) gtgCGTTTTGTGCATCACAGCATCCCGGATAAGAAAGATATTCCGTGGCTGTTGAACATTGTCGAAGTATTGAAAGGCAATGAGCATAAAGTGGCGGATGTCGGt > 1:73407/1‑105 (MQ=255) gtgCGTTTTGTGCATCACAGCATCCCGGATAAGAAAGATATTCCGTGGCTGTTGAACATTGTCGAAGTATTGAAAGGCAATGAGCATAAAGTGGCGGATGTCGGt < 2:73407/105‑1 (MQ=255) gtgCGTTTTGTGCATCACAGCATCCCGGATAAGAAAGATATTCCGTGGCTGTTGAACATTGTCGAAGTATTGAAAGGCAATGAGCATAAAGTGGCGGATGTCGGt > 1:915138/1‑105 (MQ=255) gtgCGTTTTGTGCATCACAGCATCCCGGATAAGAAAGATATTCCGTGGCTGTTGAACATTGTCGAAGTATTGAAAGGCAATGAGCATAAAGTGGCGGATGTCGGt < 2:915138/105‑1 (MQ=255) gtgCGTTTTGTGCATCACAGCATCCCGGATAAGAAAGATATTCCGTGGCTGTTGAACATTGTCGAAGTATTGAAAGGCAATGAGCATAAAGTGGCGGATGTCGGTAAGTACAACGCCGGGCAAAAGATGATGTTCTGGt < 2:194329/139‑1 (MQ=255) gtgCGTTTTGTGCATCACAGCATCCCGGATAAGAAAGATATTCCGTGGCTGTTGAACATTGTCGAAGTATTGAAAGGCAATGAGCATAAAGTGGCGGATGTCGGTAAGTACAACGCCGGGCAAAAGATGATGTTCTGGt < 2:552492/139‑1 (MQ=255) gtgCGTTTTGTGCATCACAGCATCCCGGATAAGAAAGATATTCCGTGGCTGTTGAACATTGTCGAAGTATTGAAAGGCAATGAGCATAAAGTGGCGGATGTCGGTAAGTACAACGCCGGGCAAAAGATGATGTTCTGGt < 1:1585807/139‑1 (MQ=255) tgCGTTTTGTGCATCACAGCATCCCGGATAAGAAAGATATTCCGTGGCTg < 2:412102/50‑1 (MQ=255) tgCGTTTTGTGCATCACAGCATCCCGGATAAGAAAGATATTCCGTGGCTg > 1:412102/1‑50 (MQ=255) tgCGTTTTGTGCATCACAGCATCCCGGATAAGAAAGATATTCCGTGGCTGTTGAACATTGTCg > 1:1052104/1‑63 (MQ=255) tgCGTTTTGTGCATCACAGCATCCCGGATAAGAAAGATATTCCGTGGCTGTTGAACATTGTCg < 2:1052104/63‑1 (MQ=255) cGTTTTGTGCATCACAGCATCCCGGATAAGAAAGATATTCCGTgg > 1:1639718/1‑45 (MQ=255) cGTTTTGTGCATCACAGCATCCCGGATAAGAAAGATATTCCGTgg < 2:1639718/45‑1 (MQ=255) tgtgCATCACAGCATCCCGGATAAGAAAGATATTCCGTGGCTGTTGAACATTGTCGAAGTATTGAAAGGCAATGAGCATAAAGTGGCGGATGTCg > 2:849406/1‑95 (MQ=255) tgtgCATCACAGCATCCCGGATAAGAAAGATATTCCGTGGCTGTTGAACATTGTCGAAGTATTGAAAGGCAATGAGCATAAAGTGGCGGATGTCg < 1:849406/95‑1 (MQ=255) cacaGCATCCCGGATAAGAAAGATATTCCGTGGCTGTTGAACATTGt > 1:1501524/1‑47 (MQ=255) cacaGCATCCCGGATAAGAAAGATATTCCGTGGCTGTTGAACATTGt < 2:1501524/47‑1 (MQ=255) cacaGCATCCCGGATAAGAAAGATATTCCGTGGCTGTTGAACATTGTCGAAGTATTGAAAGGCAATGAGCATAAAGTGGCGGATGTCGGT‑AGTACAACGCCGGGCAAAAGATGATGTTCTGGTCGATCATGAGCATGAt > 2:1390942/1‑139 (MQ=255) | CGTTCTTCTTCCCGACGCTGCAATGGCTGACGCAAACCTTCGGTACGCCGCAGATGGGACGCATTTTGCACCCGTTCTTCGGCATTGCGATTTTCGTCGCACTGATGTTTATGTTTGTGCGTTTTGTGCATCACAACATCCCGGATAAGAAAGATATTCCGTGGCTGTTGAACATTGTCGAAGTATTGAAAGGCAATGAGCATAAAGTGGCGGATGTCGGTAAGTACAACGCCGGGCAAAAGATGATGTTCTGGTCGATCATGAGCATGAT > NC_000913/1551438‑1551708 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |