Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,185,000 T→C V54A (GTC→GCC)  yqiC → BMFP family putative fusogenic protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,185,0000TC100.0% 321.4 / NA 89V54A (GTC→GCC) yqiCBMFP family putative fusogenic protein
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base C (40/49);  total (40/49)

AAATCGCTCGCCAGGTTCACGAATCAATGCCTAAAGGAATCAGGGAGTTCGGGGAAGATGTGGAGAAAAAAATCCGCCAAACCCTACAAGCGCAGCTGACGCGCCTCGACCTTGTAAGCCGTGAAGAGTTCGACGTCCAAACGCAAGTCCTGTTACGGACTCGTGAAAAACTGGCGCTGCTTGAACAAAGAATCAGCGAACTGGAAAATCGCAGTACTGAGATCAAAAAGCAGCCAGATCCAGAGACTCTCCCCCCAA  >  NC_000913/3184865‑3185122
                                                                                                                                       |                                                                                                                          
aaaTCGCTCGCCAGGTTCACGAATCAATGCCTAAAGGAATCAGGGAGTTCGGGGAAGATGTGGAGAAAAAAATCCGCCAAACCCTACAAGCGCAGCTGACGCGCCTCGACCTTGTAAGCCGTGAAGAGTTCGACGCCCa                                                                                                                         <  1:220300/139‑1 (MQ=255)
                    gAATCAATGCCTAAAGGAATCAGGGAGTTCGGGGAAGATGTGGAGAAAAAAATCCGCCAAACCCTACAAGCGCAGCTGACGCGCCTCGACCTTGTAAGCCGTGAAGAGTTCGACGCCCAAACGCAAGTCCTGTTACGGa                                                                                                     <  1:746031/139‑1 (MQ=255)
                         aaTGCCTAAAGGAATCAGGGAGTTCGGGGAAGATGTGGAGAAAAAAATCCGCCAAACCCTACAAGCGCAGCTGACGCGCCTCGACCTTGTAAGCCGTGAAGAGTTCGACGCCCAAACGCAAGTc                                                                                                               <  1:295072/124‑1 (MQ=255)
                         aaTGCCTAAAGGAATCAGGGAGTTCGGGGAAGATGTGGAGAAAAAAATCCGCCAAACCCTACAAGCGCAGCTGACGCGCCTCGACCTTGTAAGCCGTGAAGAGTTCGACGCCCAAACGCAAGTc                                                                                                               >  2:295072/1‑124 (MQ=255)
                         aaTGCCTAAAGGAATCAGGGAGTTCGGGGAAGATGTGGAGAAAAAAATCCGCCAAACCCTACAAGCGCAGCTGACGCGCCTCGACCTTGTAAGCCGTGAAGAGTTCGACGCCCAAACGCAAGTCCTGTTACGGACTCGt                                                                                                >  1:714289/1‑139 (MQ=255)
                           tGCCTAAAGGAATCAGGGAGTTCGGGGAAGATGTGGAGAAAAAAATCCGCCAAACCCTACAAGCGCAGCTGACGCGCCTCGACCTTGTAAGCCGTGAAGAGTTCGACGCCCAAACGCAAGTCCTGTTACGGACTCGTGa                                                                                              >  1:194215/1‑139 (MQ=255)
                           tGCCTAAAGGAATCAGGGAGTTCGGGGAAGATGTGGAGAAAAAAATCCGCCAAACCCTACAAGCGCAGCTGACGCGCCTCGACCTTGTAAGCCGTGAAGAGTTCGACGCCCAAACGCAAGTCCTGTTACGGACTCGTGa                                                                                              <  2:724716/139‑1 (MQ=255)
                               tAAAGGAATCAGGGAGTTCGGGGAAGATGTGGAGAAAAAAATCCGCCAAACCCTACAAGCGCAGCTGACGCGCCTCGACCTTGTAAGCCGTGAAGAGTTCGACGCCCAAACGCAAGTCCTGTTACGGACTCGTGaaaaa                                                                                          <  2:1140302/139‑1 (MQ=255)
                                    gAATCAGGGAGTTCGGGGAAGATGTGGAGAAAAAAATCCGCCAAACCCTACAAGCGCAGCTGACGCGCCTCGACCTTGTAAGCCGTGAAGAGTTCGACGCCCAAACGCAAGTCCTGTTACGGACTCGTGAAAAACTGgc                                                                                     <  2:591473/139‑1 (MQ=255)
                                    gAATCAGGGAGTTCGGGGAAGATGTGGAGAAAAAAATCCGCCAAACCCTACAAGCGCAGCTGACGCGCCTCGACCTTGTAAGCCGTGAAGAGTTCGACGCCCAAACGCAAGTCCTGTTACGGACTCGTGAAAAACTGgc                                                                                     <  2:194215/139‑1 (MQ=255)
                                       tCAGGGAGTTCGGGGAAGATGTGGAGAAAAAAATCCGCCAAACCCTACAAGCGCAGCTGACGCGCCTCGACCTTGTAAGCCGTGAAGAGTTCGACGCCCAAACGCAAGTCCTGTTACGGACTCGTGAAAAACTGgcgc                                                                                   <  2:778500/138‑1 (MQ=255)
                                       tCAGGGAGTTCGGGGAAGATGTGGAGAAAAAAATCCGCCAAACCCTACAAGCGCAGCTGACGCGCCTCGACCTTGTAAGCCGTGAAGAGTTCGACGCCCAAACGCAAGTCCTGTTACGGACTCGTGAAAAACTGgcgc                                                                                   >  1:778500/1‑138 (MQ=255)
                                       tCAGGGAGTTCGGGGAAGATGTGGAGAAAAAAATCCGCCAAACCCTACAAGCGCAGCTGACGCGCCTCGACCTTGTAAGCCGTGAAGAGTTCGACGCCCAAACGCAAGTCCTGTTACGGACTCGTGAAAAACTGGCgct                                                                                  >  2:319289/1‑139 (MQ=255)
                                       tCAGGGAGTTCGGGGAAGATGTGGAGAAAAAAATCCGCCAAACCCTACAAGCGCAGCTGACGCGCCTCGACCTTGTAAGCCGTGAAGAGTTCGACGCCCAAACGCAAGTCCTGTTACGGACTCGTGAAAAACTGGCgct                                                                                  >  1:1398947/1‑139 (MQ=255)
                                       tCAGGGAGTTCGGGGAAGATGTGGAGAAAAAAATCCGCCAAACCCTACAAGCGCAGCTGACGCGCCTCGACCTTGTAAGCCGTGAAGAGTTCGACGCCCAAACGCAAGTCCTGTTACGGACTCGTGAAAAACTGGCgct                                                                                  >  2:921921/1‑139 (MQ=255)
                                           ggAGTTCGGGGAAGATGTGGAGAAAAAAATCCGCCAAACCCTACAAGCGCAGCTGACGCGCCTCGACCTTGTAAGCCGTGAAGAGTTCGACGccc                                                                                                                          >  1:352528/1‑95 (MQ=255)
                                           ggAGTTCGGGGAAGATGTGGAGAAAAAAATCCGCCAAACCCTACAAGCGCAGCTGACGCGCCTCGACCTTGTAAGCCGTGAAGAGTTCGACGCCCAAACGCAAGTCCTGTTACGGACTCGTGAAAAACTGGCGCTGCtt                                                                              >  2:1486713/1‑139 (MQ=255)
                                               ttCGGGGAAGATGTGGAGAAAAAAATCCGCCAAACCCTACAAGCGCAGCTGACGCGCCTCGACCTTGTAAGCCGTGAAGAGTTCGACGCCCAAACGCAAg                                                                                                                 >  2:1184032/1‑100 (MQ=255)
                                               ttCGGGGAAGATGTGGAGAAAAAAATCCGCCAAACCCTACAAGCGCAGCTGACGCGCCTCGACCTTGTAAGCCGTGAAGAGTTCGACGCCCAAACGCAAg                                                                                                                 <  1:1184032/100‑1 (MQ=255)
                                               ttCGGGGAAGATGTGGAGAAAAAAATCCGCCAAACCCTACAAGCGCAGCTGACGCGCCTCGACCTTGTAAGCCGTGAAGAGTTCGACGCCCAAACGCAAGTCCTGTTACGGACTCGTGAAAAACTGGCGCTGCTTGAAc                                                                          >  2:1591688/1‑139 (MQ=255)
                                                 cGGGGAAGATGTGGAGAAAAAAATCCGCCAAACCCTACAAGCGCAGCTGACGCGCCTCGACCTTGTAAGCCGTGAAGAGTTCGACGCCCAAACGCAAGTCCTGTTACGGACTCGTGAAAAACTGGCGCTGCTTg                                                                             <  2:158246/134‑1 (MQ=255)
                                                 cGGGGAAGATGTGGAGAAAAAAATCCGCCAAACCCTACAAGCGCAGCTGACGCGCCTCGACCTTGTAAGCCGTGAAGAGTTCGACGCCCAAACGCAAGTCCTGTTACGGACTCGTGAAAAACTGGCGCTGCTTg                                                                             >  1:158246/1‑134 (MQ=255)
                                                 cGGGGAAGATGTGGAGAAAAAAATCCGCCAAACCCTACAAGCGCAGCTGACGCGCCTCGACCTTGTAAGCCGTGAAGAGTTCGACGCCCAAACGCAAGTCCTGTTACGGACTCGTGAAAAACTGGCGCTGCTTGAACaa                                                                        <  1:1486713/139‑1 (MQ=255)
                                                         aTGTGGAGAAAAAAATCCGCCAAACCCTACAGGCGCAGCTGACGCGCCTCGACCTTGTAAGCCGTGAAGAGTTCGACGCCCAAACGCAAGTCCTGTTACGGACTCGTGAAAAACTGgcg                                                                                    <  1:939776/119‑1 (MQ=255)
                                                         aTGTGGAGAAAAAAATCCGCCAAACCCTACAAGCGCAGCTGACGCGCCTCGACCTTGTAAGCCGTGAAGAGTTCGACGCCCAAACGCaa                                                                                                                  >  1:204818/1‑89 (MQ=255)
                                                         aTGTGGAGAAAAAAATCCGCCAAACCCTACAAGCGCAGCTGACGCGCCTCGACCTTGTAAGCCGTGAAGAGTTCGACGCCCAAACGCaa                                                                                                                  <  2:204818/89‑1 (MQ=255)
                                                         aTGTGGAGAAAAAAATCCGCCAAACCCTACAAGCGCAGCTGACGCGCCTCGACCTTGTAAGCCGTGAAGAGTTCGACGCCCAAACGCAAGTCCTGTTACGGACTCGTGAAAAACTGgcg                                                                                    >  2:939776/1‑119 (MQ=255)
                                                              gagaAAAAAATCCGCCAAACCCTACAAGCGCAGCTGACGCGCCTCGACCTTGTAAGCCGTGAAGAGTTCGACGCCCAAACGCAAg                                                                                                                 >  2:1437082/1‑85 (MQ=255)
                                                              gagaAAAAAATCCGCCAAACCCTACAAGCGCAGCTGACGCGCCTCGACCTTGTAAGCCGTGAAGAGTTCGACGCCCAAACGCAAg                                                                                                                 <  1:1437082/85‑1 (MQ=255)
                                                              gagaAAAAAATCCGCCAAACCCTACAAGCGCAGCTGACGCGCCTCGACCTTGTAAGCCGTGAAGAGTTCGACGCCCAAACGCAAGTCCTGTTACGGACTCGTGAAAAACTGGCGCTGCTTGAACAAAGAATCAg                                                                <  2:1618530/134‑1 (MQ=255)
                                                              gagaAAAAAATCCGCCAAACCCTACAAGCGCAGCTGACGCGCCTCGACCTTGTAAGCCGTGAAGAGTTCGACGCCCAAACGCAAGTCCTGTTACGGACTCGTGAAAAACTGGCGCTGCTTGAACAAAGAATCAg                                                                >  1:1618530/1‑134 (MQ=255)
                                                                   aaaaaTCCGCCAAACCCTACAAGCGCAGCTGACGCGCCTCGACCTTGTAAGCCGTGAAGAGTTCGACGCCCAAACGCAAGTCCTGTTACGGACTCGTGAAAAACTGGCGCTGCTTGAACaa                                                                        >  2:1670721/1‑121 (MQ=255)
                                                                   aaaaaTCCGCCAAACCCTACAAGCGCAGCTGACGCGCCTCGACCTTGTAAGCCGTGAAGAGTTCGACGCCCAAACGCAAGTCCTGTTACGGACTCGTGAAAAACTGGCGCTGCTTGAACaa                                                                        <  1:1670721/121‑1 (MQ=255)
                                                                   aaaaaTCCGCCAAACCCTACAAGCGCAGCTGACGCGCCTCGACCTTGTAAGCCGTGAAGAGTTCGACGCCCAAACGCAAGTCCTGTTACGGACTCGTGAAAAACTGGCGCTGCTTGAACAAAGAATCAGCGAACTGGaa                                                      <  2:602256/139‑1 (MQ=255)
                                                                     aaaTCCGCCAAACCCTACAAGCGCAGCTGACGCGCCTCGACCTTGTAAGCCGTGAAGAGTTCGACGCCCAAACGCAAGTCCTGTTACTGACTCGTGAAAAACTGGCGCTGCTTGAACAAAGAATCAGCGAACTGGaaaa                                                    <  2:30045/139‑1 (MQ=255)
                                                                        tCCGCCAAACCCTACAAGCGCAGCTGACGCGCCTCGACCTTGTAAGCCGTGAAGAGTTCGACGCCCAAACGCAAGTCCTGTTACGGACTCGTGAAAAACTGGCGCTGCTTGAACAAAGAATCAGCGAACTGGAAAATCg                                                 <  2:1176324/139‑1 (MQ=255)
                                                                        tCCGCCAAACCCTACAAGCGCAGCTGACGCGCCTCGACCTTGTAAGCCGTGAAGAGTTCGACGCCCAAACGCAAGTCCTGTTACGGACTCGTGAAAAACTGGCGCTGCTTGAACAAAGAATCAGCGAACTGGAAAATCg                                                 <  1:1591688/139‑1 (MQ=255)
                                                                          cGCCAAACCCTACAAGCGCAGCTGACGCGCCTCGACCTTGTAAGCCGTGAAGAGTTCGACGCCCAAACGCAAGTCCTGTTACGGACTCGTGAAAAACTGGCGCTGCTTGAACAAAGAATCAGCGAACTGGAAAATCGCa                                               <  2:714289/139‑1 (MQ=255)
                                                                          cGCCAAACCCTACAAGCGCAGCTGACGCGCCTCGACCTTGTAAGCCGTGAAGAGTTCGACGCCCAAACGCAAGTCCTGTTACGGACTCGTGAAAAACTGGCGCTGCTTGAACAAAGAATCAGCGAACTGGAAAATCGCa                                               <  1:319289/139‑1 (MQ=255)
                                                                           gCCAAACCCTACAAGCGCAGCTGACGCGCCTCGACCTTGTAAGCCGTGAAGAGTTCGACGCCCAAACGCAAGTCCTGTTACGGACTCGTGAAAAACTGGCgctgct                                                                               <  2:709103/106‑1 (MQ=255)
                                                                           gCCAAACCCTACAAGCGCAGCTGACGCGCCTCGACCTTGTAAGCCGTGAAGAGTTCGACGCCCAAACGCAAGTCCTGTTACGGACTCGTGAAAAACTGGCgctgct                                                                               >  1:709103/1‑106 (MQ=255)
                                                                           gCCAAACCCTACAAGCGCAGCTGACGCGCCTCGACCTTGTAAGCCGTGAAGAGTTCGACGCCCAAACGCAAGTCCTGTTACGGACTCGTGAAAAACTGGCGCTGCTTGAACAAAGAATCAGCGAACTGGAAAATCg                                                 >  2:791091/1‑136 (MQ=255)
                                                                           gCCAAACCCTACAAGCGCAGCTGACGCGCCTCGACCTTGTAAGCCGTGAAGAGTTCGACGCCCAAACGCAAGTCCTGTTACGGACTCGTGAAAAACTGGCGCTGCTTGAACAAAGAATCAGCGAACTGGAAAATCg                                                 <  1:791091/136‑1 (MQ=255)
                                                                               aaCCCTACAAGCGCAGCTGACGCGCCTCGACCTTGTAAGCCGTGAAGAGTTCGACGCCCAAACGCAAGTCCTGTTACGGACTCGTGAAAAACTGGCGCTGCTTGAACAAAGAATCAGCGAACTGGAAAATCGCAGTACt                                          <  1:921921/139‑1 (MQ=255)
                                                                                     aCAAGCGCAGCTGACGCGCCTCGACCTTGTAAGCCGTGAAGAGTTCGACGCCCAAACGCAAGTCCTGTTACGGACTCGTGAAAAACTGgc                                                                                     <  2:1450950/90‑1 (MQ=255)
                                                                                     aCAAGCGCAGCTGACGCGCCTCGACCTTGTAAGCCGTGAAGAGTTCGACGCCCAAACGCAAGTCCTGTTACGGACTCGTGAAAAACTGgc                                                                                     >  1:1450950/1‑90 (MQ=255)
                                                                                        aGCGCAGCTGACGCGCCTCGACCTTGTAAGCCGTGAAGAGTTCGACGCCCAAACGCAAGTCCTGTTACGGACTCGTGAAAAACTGGCGCTGCTTGAACAAAGAATCAGCGAACTGGAAAATCGCAGTACTGAGATCaaa                                 <  2:245283/139‑1 (MQ=255)
                                                                                         gcgcAGCTGACGCGCCTCGACCTTGTAAGCCGTGAAGAGTTCGACGCCCAAACGCAAGTCCTGTTACGGACTCGTGAAAAACTGGCGCTGCTTGAACAAAGAATCAGCGAACTGGAAAATCGCAGTACTGAGATCaaaa                                >  1:1173166/1‑139 (MQ=255)
                                                                                            cAGCTGACGCGCCTCGACCTTGTAAGCCGTGAAGAGTTCGACGCCCAAACGCAAGTc                                                                                                               >  1:1211261/1‑57 (MQ=255)
                                                                                            cAGCTGACGCGCCTCGACCTTGTAAGCCGTGAAGAGTTCGACGCCCAAACGCAAGTc                                                                                                               <  2:1211261/57‑1 (MQ=255)
                                                                                            cAGCTGACGCGCCTCGACCTTGTAAGCCGTGAAGAGTTCGACGCCCAAACGCAAGTCCTGTTACGGACTCGTGAAAAACTGGCGCTGCTTGAACAAAGAATCAGCGAACTGGAAAATCGCa                                               <  2:491235/121‑1 (MQ=255)
                                                                                            cAGCTGACGCGCCTCGACCTTGTAAGCCGTGAAGAGTTCGACGCCCAAACGCAAGTCCTGTTACGGACTCGTGAAAAACTGGCGCTGCTTGAACAAAGAATCAGCGAACTGGAAAATCGCa                                               >  1:491235/1‑121 (MQ=255)
                                                                                            cAGCTGACGCGCCTCGACCTTGTAAGCCGTGAAGAGTTCGACGCCCAAACGCAAGTCCTGTTACGGACTCGTGAAAAACTGGCGCTGCTTGAACAAAGAATCAGCGAACTGGAAAATCGCAGTACTga                                        >  2:1410741/1‑128 (MQ=255)
                                                                                            cAGCTGACGCGCCTCGACCTTGTAAGCCGTGAAGAGTTCGACGCCCAAACGCAAGTCCTGTTACGGACTCGTGAAAAACTGGCGCTGCTTGAACAAAGAATCAGCGAACTGGAAAATCGCAGTACTga                                        <  1:1410741/128‑1 (MQ=255)
                                                                                            cAGCTGACGCGCCTCGACCTTGTAAGCCGTGAAGAGTTCGACGCCCAAACGCAAGTCCTGTTACGGACTCGTGAAAAACTGGCGCTGCTTGAACAAAGAATCAGCGAACTGGAAAATCGCAGTACTGAGATCAAAAagc                             >  2:1538613/1‑139 (MQ=255)
                                                                                               cTGACGCGCCTCGACCTTGTAAGCCGTGAAGAGTTCGACGCCCAAACGCAAGTc                                                                                                               <  2:212266/54‑1 (MQ=255)
                                                                                               cTGACGCGCCTCGACCTTGTAAGCCGTGAAGAGTTCGACGCCCAAACGCAAGTc                                                                                                               >  1:212266/1‑54 (MQ=255)
                                                                                               cTGACGCGCCTCGACCTTGTAAGCCGTGAAGAGTTCGACGCCCAAACGCAAGTCCTGTTACGGACTCGTGAAAAACTGGCGCTGCTTGAACAAAGAATCAGCGAACTGGAAAATCGTAGTACTGAGATCAAAAagcagc                          >  2:923778/1‑139 (MQ=255)
                                                                                                 gACGCGCCTCGACCTTGTAAGCCGTGAAGAGTTCGACGCCCAAACGCAAGTCCTGTTACGGACTCGTGAAAAACTGGCGCTGCTTGAACAAAGAATCAGCGAACTGGAAAATCGCAGTACTGAGATCAAAAAGCAGCCa                        <  2:1413382/139‑1 (MQ=255)
                                                                                                   cgcgCCTCGACCTTGTAAGCCGTGAAGAGTTCGACGCCCAAACGCAAGTCCTGTTACGGACTCGTGAAAAACTGGCGCTGCTTGAACAAAGAATCAGCGAACTGGAAAATCGCAGTACTGAGATCAAAAAGCAGCCAGa                      >  2:1081231/1‑139 (MQ=255)
                                                                                                     cgcCTCGACCTTGTAAGCCGTGAAGAGTTCGACGCCCAAACGCAAGTCCTGTTACGGACTCGTGAAAAACTGGCGCTGCTTGAACAAAGAATCAGCGAACTGGAAAATCGTAGTACTGAGATCAAAAAGCAGCCAGATc                    <  1:923778/139‑1 (MQ=255)
                                                                                                             ccTTGTAAGCCGTGAAGAGTTCGACGCCCAAACGCAAGTCCTGTTACGGACTCGTGAAAAACTGGCGCTGCTTGAACAAAGAATCAGCGAACTGGAAAATCGCAGTACTGAGATCAAAAAGCAGCCAGATCCAGAGAct            <  2:1173166/139‑1 (MQ=255)
                                                                                                             ccTTGTAAGCCGTGAAGAGTTCGACGCCCAAACGCAAGTCCTGTTACGGACTCGTGAAAAACTGGCGCTGCTTGAACAAAGAATCAGCGAACTGGAAAATCGCAGTACTGAGATCAAAAAGCAGCCAGATCCAGAGAct            <  1:1081231/139‑1 (MQ=255)
                                                                                                             ccTTGTAAGCCGTGAAGAGTTCGACGCCCAAACGCAAGTCCTGTTACGGACTCGTGAAAAACTGGCGCTGCTTGAACAAAGAATCAGCGAACTGGAAAATCGCAGTACTGAGATCAAAAAGCAGCCAGATCCAGAGAct            <  2:1398947/139‑1 (MQ=255)
                                                                                                              cTTGTAAGCCGTGAAGAGTTCGACGCCCAAACGCAAGTCCTGTTACGGACTCGTGAAAAACTGGCGCTGCTTGAACAAAGAATCAGCGAACTGGAAAATCGCAGTACTGAGATCAAAAAGCAGCCAGATCCAGAGActc           <  1:1538613/139‑1 (MQ=255)
                                                                                                                tGTAAGCCGTGAAGAGTTCGACGCCCAAACGCAAGTCCTGTTACGGACTCGTGAAAAACTGGCGCTGCTTGAACAAAGAATCAGCGAACTGGaaaa                                                    >  2:262216/1‑96 (MQ=255)
                                                                                                                tGTAAGCCGTGAAGAGTTCGACGCCCAAACGCAAGTCCTGTTACGGACTCGTGAAAAACTGGCGCTGCTTGAACAAAGAATCAGCGAACTGGaaaa                                                    <  1:262216/96‑1 (MQ=255)
                                                                                                                       cGTGAAGAGTTCGACGCCCAAACGCAAGTCCTGTTACGGACTCGTGAAAAACTGGCGCTGCTTGAACAAAGAATCAGCGAACTGGAAAATCGCAGTACTGAGATCAAAAAGCAGCCAGATCCAGAGActct          <  1:128009/131‑1 (MQ=255)
                                                                                                                       cGTGAAGAGTTCGACGCCCAAACGCAAGTCCTGTTACGGACTCGTGAAAAACTGGCGCTGCTTGAACAAAGAATCAGCGAACTGGAAAATCGCAGTACTGAGATCAAAAAGCAGCCAGATCCAGAGActct          >  2:128009/1‑131 (MQ=255)
                                                                                                                       cGTGAAGAGTTCGACGCCCAAACGCAAGTCCTGTTACGGACTCGTGAAAAACTGGCGCTGCTTGAACAAAGAATCAGCGAACTGGAAAATCGCAGTACTGAGATCAAAAAGCAGCCAGATCCAGAGACTCTCCCCCCaa  >  2:543679/1‑139 (MQ=255)
                                                                                                                        gTGAAGAGTTCGACGCCCAAACGCAAGTCCTGTTACGGACTCGTGAAAAACTGGCGCTGCTTGAACAAAGAATCAGCGAACTGGAAAATCGCAGTACAGAGATCAAAAAGCAGCCAGATCCAGAGACTCTCCCCCCa   >  2:1015510/1‑137 (MQ=255)
                                                                                                                        gTGAAGAGTTCGACGCCCAAACGCAACTCCTGTTACGGACTCGTGAAAAACTGGCGCTGCTTGAACAAAGAATCAGCGAACTGGAAAATCGCAGTACTGAGATCAAAAAGCAGCCAGATCCAGAGACTCTCCCCCCa   <  1:1015510/137‑1 (MQ=255)
                                                                                                                         tGAAGAGTTCGACGCCCAAACGCAAGTCCTGTTACGGACt                                                                                                   >  2:1616297/1‑40 (MQ=255)
                                                                                                                         tGAAGAGTTCGACGCCCAAACGCAAGTCCTGTTACGGACt                                                                                                   <  1:1616297/40‑1 (MQ=255)
                                                                                                                         tGAAGAGTTCGACGCCCAAACGCAAGTCCTGTTACGGACTCGTGAAAAACTGGCGCTGCTTGAACAAAGAATCAGCGAACTGGaa                                                      >  2:1444813/1‑85 (MQ=255)
                                                                                                                         tGAAGAGTTCGACGCCCAAACGCAAGTCCTGTTACGGACTCGTGAAAAACTGGCGCTGCTTGAACAAAGAATCAGCGAACTGGaa                                                      <  1:1444813/85‑1 (MQ=255)
                                                                                                                          gacgagTTCGACGCCCAAACGCAAGTCCTGTTACGGACTCGTGAAAAACTGGCGCTGCTTGAACa                                                                         >  1:255145/4‑65 (MQ=255)
                                                                                                                          gAAGAGTTCGACGCCCAAACGCAAGTCCTGTTACGGACTCGTGAAAAACTGGCGCTGCTTGAACa                                                                         <  2:255145/65‑1 (MQ=255)
                                                                                                                           aaGAGTTCGACGCCCAAACGCAAGTCCTGTTACGGACTCGTGAAAAACTGGCGCTGCTTGAACAAAGAATCAGCGAACTGGAAAATCGCAGTACTGAGATCAAAAAGCAGCCAGATCCAGAGActct          <  1:1411462/127‑1 (MQ=255)
                                                                                                                           aaGAGTTCGACGCCCAAACGCAAGTCCTGTTACGGACTCGTGAAAAACTGGCGCTGCTTGAACAAAGAATCAGCGAACTGGAAAATCGCAGTACTGAGATCAAAAAGCAGCCAGATCCAGAGActct          >  2:1411462/1‑127 (MQ=255)
                                                                                                                                ttCGACGCCCAAACGCAAGTCCTGTTACGGACTCGTGAAAAACTgg                                                                                      >  1:1355750/1‑46 (MQ=255)
                                                                                                                                ttCGACGCCCAAACGCAAGTCCTGTTACGGACTCGTGAAAAACTgg                                                                                      <  2:1355750/46‑1 (MQ=255)
                                                                                                                                ttCGACGCCCAAACGCAAGTCCTGTTACGGACTCGTGAAAAACTGgcg                                                                                    >  1:864035/1‑48 (MQ=255)
                                                                                                                                ttCGACGCCCAAACGCAAGTCCTGTTACGGACTCGTGAAAAACTGgcg                                                                                    <  2:864035/48‑1 (MQ=255)
                                                                                                                                ttCGACGCCCAAACGCAAGTCCTGTTACGGACTCGTGAAAAACTGGCGCTGCTTGAACAAAGAATCAGCGAACTGGAAAATCGCAGTACTGAGATCAAAAAGCAGCCa                        >  1:817269/1‑108 (MQ=255)
                                                                                                                                ttCGACGCCCAAACGCAAGTCCTGTTACGGACTCGTGAAAAACTGGCGCTGCTTGAACAAAGAATCAGCGAACTGGAAAATCGCAGTACTGAGATCAAAAAGCAGCCa                        <  2:817269/108‑1 (MQ=255)
                                                                                                                                   gACGCCCAAACGCAAGTCCTGTTACGGACTCGTGAAAAACTGGCGCTGCTTGAACa                                                                         <  1:896031/56‑1 (MQ=255)
                                                                                                                                   gACGCCCAAACGCAAGTCCTGTTACGGACTCGTGAAAAACTGGCGCTGCTTGAACa                                                                         >  2:896031/1‑56 (MQ=255)
                                                                                                                                   gACGCCCAAACGCAAGTCCTGTTACGGACTCGTGAAAAACTGGCGCTGCTTGAACAAAGAATCAGCGAACTGGAAAATCGCAGTACTGAGATCAAAAAGCAGCCAGATCCAGAGACTCTCCCCCCaa  <  1:849415/127‑1 (MQ=255)
                                                                                                                                   gACGCCCAAACGCAAGTCCTGTTACGGACTCGTGAAAAACTGGCGCTGCTTGAACAAAGAATCAGCGAACTGGAAAATCGCAGTACTGAGATCAAAAAGCAGCCAGATCCAGAGACTCTCCCCCCaa  >  2:849415/1‑127 (MQ=255)
                                                                                                                                       |                                                                                                                          
AAATCGCTCGCCAGGTTCACGAATCAATGCCTAAAGGAATCAGGGAGTTCGGGGAAGATGTGGAGAAAAAAATCCGCCAAACCCTACAAGCGCAGCTGACGCGCCTCGACCTTGTAAGCCGTGAAGAGTTCGACGTCCAAACGCAAGTCCTGTTACGGACTCGTGAAAAACTGGCGCTGCTTGAACAAAGAATCAGCGAACTGGAAAATCGCAGTACTGAGATCAAAAAGCAGCCAGATCCAGAGACTCTCCCCCCAA  >  NC_000913/3184865‑3185122

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑