| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 4,549,001 | G→A | C65Y (TGC→TAC) | fimH → | minor component of type 1 fimbriae |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,549,001 | 0 | G | A | 100.0% | 238.4 / NA | 73 | C65Y (TGC→TAC) | fimH | minor component of type 1 fimbriae |
| Reads supporting (aligned to +/- strand): ref base G (0/0); new base A (38/35); total (38/35) | |||||||||||
GCCTGTAAAACCGCCAATGGTACCGCTATCCCTATTGGCGGTGGCAGCGCCAATGTTTATGTAAACCTTGCGCCCGTCGTGAATGTGGGGCAAAACCTGGTCGTGGATCTTTCGACGCAAATCTTTTGCCATAACGATTATCCGGAAACCATTACAGACTATGTCACACTGCAACGAGGCTCGGCTTATGGCGGCGTGTTATCTAATTTTTCCGGGACCGTAAAATATAGTGGCAGTAGCTATCCATTTCCTACCAC > NC_000913/4548874‑4549130 | gCCTGTAAAACCGCCAATGGTACCGCTATCCCTATTGGCGGTGGCAGCGCCAATGTTTATGTAAACCTTGCGCCCGTCGTGAATGTGGGGCAAAACCTGGTCGTGGATCTTTCGACGCAAATCTTTTACCATAACGAtt < 2:1660536/139‑1 (MQ=255) tAAAACCGCCAATGGTACCGCTATCCCTATTGGCGGTGGCAGCGCCAATGTTTATGTAAACCTTGCGCCCGTCGTGAATGTGGGGCAAAACCTGGTCGTGGATCTTTCGACGCAAATCTTTTACCATaa < 1:812255/129‑1 (MQ=255) tAAAACCGCCAATGGTACCGCTATCCCTATTGGCGGTGGCAGCGCCAATGTTTATGTAAACCTTGCGCCCGTCGTGAATGTGGGGCAAAACCTGGTCGTGGATCTTTCGACGCAAATCTTTTACCATaa > 2:812255/1‑129 (MQ=255) tAAAACCGCCAATGGTACCGCTATCCCTATTGGCGGTGGCAGCGCCAATGTTTATGTAAACCTTGCGCCCGTCGTGAATGTGGGGCAAAACCTGGTCGTGGATCTTTCGACGCAAATCTTTTACCATAACGATTATCCg < 2:149272/139‑1 (MQ=255) tAAAACCGCCAATGGTACCGCTATCCCTATTGGCGGTGGCAGCGCCAATGTTTATGTAAACCTTGCGCCCGTCGTGAATGTGGGGCAAAACCTGGTCGTGGATCTTTCGACGCAAATCTTTTACCATAACGATTATCCg > 1:149272/1‑139 (MQ=255) gCCAATGGTACCGCTATCCCTATTGGCGGTGGCAGCGCCAATGTTTATGTAAACCTTGCGCCCGTCGTGAATGTGGGGCAAAACCTGGTCGTGGATCTTTCGACGCAAATCTTTTACCATAACGATTATCCGGAAACCa > 2:1511377/1‑139 (MQ=255) aaTGGTACCGCTATCCCTATTGGCGGTGGCAGCGCCAATGTTTATGTAAACCTTGCGCCCGTCGTGAATGTGGGGCAAAACCTGGTCGTGGATCTTTCGACGCAAATCTTTTACCATAACGATTATCCGGAAACCATTa > 1:820997/1‑139 (MQ=255) ctCCCTATTGGCGGTGGCAGCGCCAATGTTTATGTAAACCTTGCGCCCGTCGTGAATGTGGGGCAAAACCTGGTCGTGGATCTTTCGACGCAAATCTTTTACCATAACGATTATCCGGAAACCATTACAGACTATGTca > 2:1056545/2‑139 (MQ=255) tCCCTATTGGCGGTGGCAGCGCCAATGTTTATGTAAACCTTGCGCCCGTCGTGAATGTGGGGCAAAACCTGGTCGTGGATCTTTCGACGCAAATCTTTTACCATAACGATTATCCGGAAACCATTACa < 1:793301/128‑1 (MQ=255) tCCCTATTGGCGGTGGCAGCGCCAATGTTTATGTAAACCTTGCGCCCGTCGTGAATGTGGGGCAAAACCTGGTCGTGGATCTTTCGACGCAAATCTTTTACCATAACGATTATCCGGAAACCATTACa > 2:793301/1‑128 (MQ=255) ccTATTGGCGGTGGCCGCGCCAATGTTTATGTAAACCTTGCGCCCGTCGTGAATGTGGGGCAAAACCTGGTCGTGGATCTTTCGACGCAAATCTTTTACCATAACGAtt > 2:1128892/1‑109 (MQ=255) ccTATTGGCGGTGGCAGCGCCAATGTTTATGTAAACCTTGCGCCCGTCGTGAATGTGGGGCAAAACCTGGTCGTGGATCTTTCGACGCAAATCTTTTACCATAACGAtt < 1:1128892/109‑1 (MQ=255) aTTGGCGGTGGCAGCGCCAATGTTTATGTAAACCTTGCGCCCGTCGTGAATGTGGGGCAAAACCTGGTCGTGGATCTTTCGACGCAAATCTTTTACCATAACGATTATCCGGAAACCATTACAGACTATGTCACACTGc > 2:1048929/1‑139 (MQ=255) gCGGTGGCAGCGCCAATGTTTATGTAAACCTTGCGCCCGTCGTGAATGTGGGGCAAAACCTGGTCGTGGATCTTTCGACGCAAATCTTTTACCATAACGATTATCCGGa < 1:773402/109‑1 (MQ=255) gCGGTGGCAGCGCCAATGTTTATGTAAACCTTGCGCCCGTCGTGAATGTGGGGCAAAACCTGGTCGTGGATCTTTCGACGCAAATCTTTTACCATAACGATTATCCGGa > 2:773402/1‑109 (MQ=255) cGGTGGCAGCGCCAATGTTTATGTAAACCTTGCGCCCGTCGTGAATGTGGGGCAAAACCTGGTCGTGGATCTTTCGACGCAAATCTTTTACCATaa > 1:938348/1‑96 (MQ=255) cGGTGGCAGCGCCAATGTTTATGTAAACCTTGCGCCCGTCGTGAATGTGGGGCAAAACCTGGTCGTGGATCTTTCGACGCAAATCTTTTACCATaa < 2:938348/96‑1 (MQ=255) cGGTGGCAGCGCCAATGTTTATGTAAACCTTGCGCCCGTCGTGAATGTGGGGCAAAACCTGGTCGTGGATCTTTCGACGCAAATCTTTTACCATAACGATTATCCGGAAACCATTACAGa < 2:1311882/120‑1 (MQ=255) cGGTGGCAGCGCCAATGTTTATGTAAACCTTGCGCCCGTCGTGAATGTGGGGCAAAACCTGGTCGTGGATCTTTCGACGCAAATCTTTTACCATAACGATTATCCGGAAACCATTACAGa > 1:1311882/1‑120 (MQ=255) gTGGCAGCGCCAATGTTTATGTAAACCTTGCGCCCGTCGTGAATGTGGGGCAAAACCTGGTCGTGGATCTTTCGACGCAAATCTTTTACCATAACGATTATCCGGAAACCATTACAGACTATGTCACACTGCAACGAgg < 2:1372732/139‑1 (MQ=255) ggCAGCGCCAATGTTTATGTAAACCTTGCGCCCGTCGTGAATGTGGGGCAAAACCTGGTCGTGGATCTTTCGACGCAAATCTTTTACCATAACGATTATCCGGAAACCATTACAGACTATGTCACACTGCAACGAGGCt < 2:820997/139‑1 (MQ=255) ggCAGCGCCAATGTTTATGTAAACCTTGCGCCCGTCGTGAATGTGGGGCAAAACCTGGTCGTGGATCTTTCAACGCAAATCTTTTACCATAACGATTATCCGGAAACCATTACAGACTATGCCACACTGCAACGAGGCt < 1:1056545/139‑1 (MQ=255) aaCCTTGCGCCCGTCGTGAATGTGGGGCAAAACCTGGTCGTGGATCTTTCGACGCAAATCTTTTACCATAACGATTATCCGGAAACCATTACAGACTATGTca < 2:1110138/103‑1 (MQ=255) aaCCTTGCGCCCGTCGTGAATGTGGGGCAAAACCTGGTCGTGGATCTTTCGACGCAAATCTTTTACCATAACGATTATCCGGAAACCATTACAGACTATGTca > 1:1110138/1‑103 (MQ=255) aaCCTTGCGCCCGTCGTGAATGTGGGGCAAAACCTGGTCGTGGATCTTTCGACGCAAATCTTTTACCATAACGATTATCCGGAAACCATTACAGACTATGTCACACTGCAACGAGGCTCGGCTTATGGCGGCGTGTTAt > 1:1689373/1‑139 (MQ=255) aCCTTGCGCCCGTCGTGAATGTGGGGCAAAACCTGGTCGTGGATCTTTCGACGCAAATCTTTTACCATAACGATTATCCGGAAACCATTACa > 2:802077/1‑92 (MQ=255) aCCTTGCGCCCGTCGTGAATGTGGGGCAAAACCTGGTCGTGGATCTTTCGACGCAAATCTTTTACCATAACGATTATCCGGAAACCATTACa < 1:802077/92‑1 (MQ=255) aCCTTGCGCCCGTCGTGAATGTGGGGCAAAACCTGGTCGTGGATCTTTCGACGCAAATCTTTTACCATAACGATTATCCGGAAACCATTACAGACTATGTCACACTGCAACGAGGCt > 2:437246/1‑117 (MQ=255) aCCTTGCGCCCGTCGTGAATGTGGGGCAAAACCTGGTCGTGGATCTTTCGACGCAAATCTTTTACCATAACGATTATCCGGAAACCATTACAGACTATGTCACACTGCAACGAGGCt < 1:437246/117‑1 (MQ=255) aCCTTGCGCCCGTCGTGAATGTGGGGCAAAACCTGGTCGTGGATCTTTCGACGCAAATCTTTTACCATAACGATTATCCGGAAACCATTACAGACTATGTCACACTGCAACGAGGCTCGGCTTATGGCGGCGTGTTATc > 2:862297/1‑139 (MQ=255) ccTTGCGCCCGTCGTGAATGTGGGGCAAAACCTGGTCGTGGATCTTTCGACGCAAATCTTTTACCATAACGATTATCCGGAAACCATTACAGACTATGTCACACTGCAACGAGGCTCGGCTTATGGCGGCGTGTTATCt > 2:365984/1‑139 (MQ=255) ttGCGCCCGTCGTGAATGTGGGGCAAAACCTGGTCGTGGATCTTTCGACGCAAATCTTTTACCAt < 1:583158/65‑1 (MQ=255) ttGCGCCCGTCGTGAATGTGGGGCAAAACCTGGTCGTGGATCTTTCGACGCAAATCTTTTACCAt > 2:583158/1‑65 (MQ=255) gcgcCCGTCGTGAATGTGGGGCAAAACCTGGTCGTGGATCTTTCGACGCAAATCTTTTACCATAACGATTATCCGGAAACCATTACa > 1:102043/1‑87 (MQ=255) gcgcCCGTCGTGAATGTGGGGCAAAACCTGGTCGTGGATCTTTCGACGCAAATCTTTTACCATAACGATTATCCGGAAACCATTACa < 2:102043/87‑1 (MQ=255) gcgcCCGTCGTGAATGTGGGGCAAAACCTGGTCGTGGATCTTTCGACGCAAATCTTTTACCATAACGATTATCCGGAAACCATTACAGACTATGTCACACTGCAACGAGGCTCGGCTTATGGCGGCGTGTTATCTAAtt > 2:459540/1‑139 (MQ=255) cgcCCGTCGTGAATGTGGGGCAAAACCTGGTCGTGGATCTTTCGACGCAAATCTTTTACCATAACGATTATCCGGAAACCATTACAGACTATGTCACACTGCAACGAGGCTCGGCTTATGGCGGCGTGTTATCTAAttt > 2:63740/1‑139 (MQ=255) tcgtGAATGTGGGGCAAAACCTGGTCGTGGATCTTTCGACGCAAATCTTTTACCATAACGATTATCCGGAAACCATTACAGACTATg < 1:1481765/87‑1 (MQ=255) tcgtGAATGTGGGGCAAAACCTGGTCGTGGATCTTTCGACGCAAATCTTTTACCATAACGATTATCCGGAAACCATTACAGACTATg > 2:1481765/1‑87 (MQ=255) tcgtGAATGTGGGGCAAAACCTGGTCGTGGATCTTTCGACGCAAATCTTTTACCATAACGATTATCCGGAAACCATTACAGACTATGTCACACTGCAACGAGGCTCGGCTTATGGCGGCGTGTTATCTAATTTTTCCgg < 1:63740/139‑1 (MQ=255) gtGAATGTGGGGCAAAACCTGGTCGTGGATCTTTCGACGCAAATCTTTTACCATAACGATTATCCGGAAACCATTACAGACTATGTCACACTGCAACGAGGCTCGGCTTATGGCGGCGTGTTATCTAATTTTTCCGGGa < 2:1689373/139‑1 (MQ=255) gtGAATGTGGGGCAAAACCTGGTCGTGGATCTTTCGACGCAAATCTTTTACCATAACGATTATCCGGAAACCATTACAGACTATGTCACACTGCAACGAGGCTCGGCTTATGGCGGCGTGTTATCTAATTTTTCCGGGa < 1:459540/139‑1 (MQ=255) gtGAATGTGGGGCAAAACCTGGTCGTGGATCTTTCGACGCAAATCTTTTACCATAACGATTATCCGGAAACCATTACAGACTATGTCACACTGCAACGAGGCTCGGCTTATGGCGGCGTGTTATCTAATTTTTCCGGGa < 1:1511377/139‑1 (MQ=255) gtGAATGTGGGGCAAAACCTGGTCGTGGATCTTTCGACGCAAATCTTTTACCATAACGATTATCCGGAAACCATTACAGACTATGTCACACTGCAACGAGGCTCGGCTTATGGCGGCGTGTTATCTAATTTTTCCGGGa < 1:117727/139‑1 (MQ=255) gtGAATGTGGGGCAAAACCTGGTCGTGGATCTTTCGACGCAAATCTTTTACCATAACGATTATCCGGAAACCATTACAGACTATGTCACACTGCAACGAGGCTCGGCTTATGGCGGCGTGTTATCTAATTTTTCCGGGa < 2:1345399/139‑1 (MQ=255) gtGAATGTGGGGCAAAACCTGGTCGTGGATCTTTCGACGCAAATCTTTTACCATAACGATTATCCGGAAACCATTACAGACTATGTCACACTGCAACGAGGCTCGGCTTACGGCGGCGTGTTATCTAATTTTTCCGGGa < 1:1048929/139‑1 (MQ=255) tgtgGGGCAAAACCTGGTCGTGGATCTTTCGACGCAAATCTTTTACCATAACGATTATCCGGAAACCATTACAGACTATGTCACACTGCAACGAGGCTCGGCTTATGGCGGCGTGTTATCTAATTTTTCCGGGACCGTa > 1:1636480/1‑139 (MQ=255) tgGGGCAAAACCTGGTCGTGGATCTTTCGACGCAAATCTTTTACCATAACGAtt > 1:1189856/1‑54 (MQ=255) tgGGGCAAAACCTGGTCGTGGATCTTTCGACGCAAATCTTTTACCATAACGAtt < 2:1189856/54‑1 (MQ=255) tgGGGCAAAACCTGGTCGTGGATCTTTCGACGCAAATCTTTTACCATAACGATTATCCg > 2:1471857/1‑59 (MQ=255) tgGGGCAAAACCTGGTCGTGGATCTTTCGACGCAAATCTTTTACCATAACGATTATCCg < 1:1471857/59‑1 (MQ=255) gggCAAAACCTGGTCGTGGATCTTTCGACGCAAATCTTTTACCATAACGATTATCCGGaaa > 2:555814/1‑61 (MQ=255) gggCAAAACCTGGTCGTGGATCTTTCGACGCAAATCTTTTACCATAACGATTATCCGGaaa < 1:555814/61‑1 (MQ=255) gggCAAAACCTGGTCGTGGATCTTTCGACGCAAATCTTTTACCATAACGATTATCCGGAAACCATTACAGACTATGTCACACTGCAACGAGGCTCGGCTTATGGCGGCGTGTTATCTAATTTTTCCGGGAcc > 1:678952/1‑132 (MQ=255) gggCAAAACCTGGTCGTGGATCTTTCGACGCAAATCTTTTACCATAACGATTATCCGGAAACCATTACAGACTATGTCACACTGCAACGAGGCTCGGCTTATGGCGGCGTGTTATCTAATTTTTCCGGGAcc < 2:678952/132‑1 (MQ=255) gggCAAAACCTGGTCGTGGATCTTTCGACGCAAATCTTTTACCATAACGATTATCCGGAAACCATTACAGACTATGTCACACTGCAACGAGGCTCGGCTTATGGCGGCGTGTTATCTAATTTTTCCGGGAcc > 2:1490509/1‑132 (MQ=255) gggCAAAACCTGGTCGTGGATCTTTCGACGCAAATCTTTTACCATAACGATTATCCGGAAACCATTACAGACTATGTCACACTGCAACGAGGCTCGGCTTATGGCGGCGTGTTATCTAATTTTTCCGGGAcc < 1:1490509/132‑1 (MQ=255) gggCAAAACCTGGTCGTGGATCTTTCGACGCAAATCTTTTACCATAACGATTATCCGGAAACCATTACAGACTATGTCACACTGCAACGAGGCTCGGCTTATGGCGGCGTGTTATCTAATTTTTCCGGGACCGTaaa < 2:280000/137‑1 (MQ=255) gggCAAAACCTGGTCGTGGATCTTTCGACGCAAATCTTTTACCATAACGATTATCCGGAAACCATTACAGACTATGTCACACTGCAACGAGGCTCGGCTTATGGCGGCGTGTTATCTAATTTTTCCGGGACCGTaaa > 1:280000/1‑137 (MQ=255) ggCAAAACCTGGTCGTGGATCTTTCGACGCAAATCTTTTACCATAACGATTATCCGGAAACCATTACAGACTATGTCACACTGCAACGAGGCTCGGCTTATGGCGGCGTGTTATCTAATTTTTCCGGGACCGTAAAata > 2:1208919/1‑139 (MQ=255) gTCGTGGATCTTTCGACGCAAATCTTTTACCATAACGATTATCCGGAAACCATTACAGACTATGTCACACTGCAACGAGGCTCGGCTTATGGCGGCGTGTTATCTAATTTTTCCGGGACCGTAAAATATAGTGGc < 1:1272998/135‑1 (MQ=255) gTCGTGGATCTTTCGACGCAAATCTTTTACCATAACGATTATCCGGAAACCATTACAGACTATGTCACACTGCAACGAGGCTCGGCTTATGGCGGCGTGTTATCTAATTTTTCCGGGACCGTAAAATATAGTGGc > 2:1272998/1‑135 (MQ=255) tGGATCTTTCGACGCAAATCTTTTACCATAACGATTATCCGGAAACCATTACAGACTATGTCACACTGCGACGAGGCTCGGCTTATGGCGGCGTGTTATCTAATTTTTCCGGGACCGGAAAATATAGTGGCAGTAGCTa > 2:984046/1‑139 (MQ=255) gATCTTTCGACGCAAATCTTTTACCATAACGATTATCCGGAAACCATTACAGACTATGTCACACTGCAACGAGGCTCGGCTTATGGCGGCGTGTTATCTAATTTTTCCGGGACCGTAAAATATAGTGGCAGTAGCTATc > 1:1080353/1‑139 (MQ=255) tttCGACGCAAATCTTTTACCATAACGATTATCCGGAAACCATTACAGACTATGTCACACTGCAACGAGGCTCGGCTTATGgcggcg < 2:746581/87‑1 (MQ=255) tttCGACGCAAATCTTTTACCATAACGATTATCCGGAAACCATTACAGACTATGTCACACTGCAACGAGGCTCGGCTTATGgcggcg > 1:746581/1‑87 (MQ=255) ttCGACGCAAATCTTTTACCATAACGATTATCCGGAAACCATTACAGACTATGTca < 2:1079106/56‑1 (MQ=255) ttCGACGCAAATCTTTTACCATAACGATTATCCGGAAACCATTACAGACTATGTca > 1:1079106/1‑56 (MQ=255) ttCGACGCAAATCTTTTACCATAACGATTATCCGGAAACCATTACAGACTATGTCACACTGCAACGAGGCt > 2:756141/1‑71 (MQ=255) ttCGACGCAAATCTTTTACCATAACGATTATCCGGAAACCATTACAGACTATGTCACACTGCAACGAGGCt < 1:756141/71‑1 (MQ=255) aaaTCTTTTACCATAACGATTATCCGGAAACCATTACAGACTATGTCACACTGCAACGAGGCTCGGCTTATGGCGGCGTGTTATCTAATTTTTCCGGGa > 1:1236038/1‑99 (MQ=255) aaaTCTTTTACCATAACGATTATCCGGAAACCATTACAGACTATGTCACACTGCAACGAGGCTCGGCTTATGGCGGCGTGTTATCTAATTTTTCCGGGa < 2:1236038/99‑1 (MQ=255) aaaTCTTTTACCATAACGATTATCCGGAAACCATTACAGACTATGTCACACTGCAACGAGGCTCGGCTTATGGCGGCGTGTTATCTAATTTTTCCGGGACCGTAAAATATAGTGGCAGTAGCTATCCATTTCCTaccac > 2:1500451/1‑139 (MQ=255) | GCCTGTAAAACCGCCAATGGTACCGCTATCCCTATTGGCGGTGGCAGCGCCAATGTTTATGTAAACCTTGCGCCCGTCGTGAATGTGGGGCAAAACCTGGTCGTGGATCTTTCGACGCAAATCTTTTGCCATAACGATTATCCGGAAACCATTACAGACTATGTCACACTGCAACGAGGCTCGGCTTATGGCGGCGTGTTATCTAATTTTTCCGGGACCGTAAAATATAGTGGCAGTAGCTATCCATTTCCTACCAC > NC_000913/4548874‑4549130 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |