| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1503157 | 4 (0.100) | 28 (0.720) | 22/232 | 0.6 | 87.5% | intergenic (+32/+61) | ydcL/insP | lipoprotein/pseudogene, IS609 transposase A,IS, phage, Tn, Transposon‑related functions, extrachromosomal, transposon related |
| ? | NC_000913 | = 1979270 | NA (NA) | noncoding (1/768 nt) | IS1 | repeat region | |||||
AAAGACCTGAATAACGAAAGTACGCCAATGGCTTTCGAAAATATTAAACAAGTTATTGATGACATGGCGACCGATGCCACCATGTTTGACGTTAACAAAAAGTAGTTCCAGACGCGCCATCGTTAGATGGCGCTTTTTATCCGGTGCGCCGTAAAACCCCATCCTTCAGGGCGGGGATATAAGGCGCGGTTTTCCACCTGACCAGGTGTTTGCTGTTGTTCAATGTATTGGCGGATGACGGATATTGGCGCACCTCCGCAGCTACTGGCAAAA > NC_000913/1503021‑1503293 | aaaGACCTGAATAACGAAAGTACGCCAATGGCTTTCGAAAATATTAAACAAGTTATTGATGACATGGCGACCGATGCCACCATGTTTGACGTTAACAAAAAGTAATTCCAGACGCGCCATCGTTAGATGGCGCTTTTgg < 2:116910‑M1/139‑3 (MQ=255) gaggcagcacctggcacggctgggacggaagtcgctgtcgttctcaaaatcggtggagctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccgGCGCTTTTTATCCg > 1:782679‑M2/126‑139 (MQ=255) aggcagcacctggcacggctgggacggaagtcgctgtcgttctcaaaatcggtggagctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccgGCGCTTTTTATCCgg > 2:773331‑M2/125‑139 (MQ=255) agcacctggcacggctgggacggaagtcgctgtcgttctcaaaatcggtggagctgcatgacaaagtcatcgggcattatctggacataaaacactatcaataagttggagtcattaccgGCGCTTTTTATCCGGTgcg < 2:735080‑M2/19‑1 (MQ=255) aaTAACGAAAGTACGCCAATGGCTTTCGAAAATATTAAACAAGTTATTGATGACATGGCGACCGATGCCACCATGTTTGACGTTAACAAAAAGTAATTCCAGACGCGCCATCGTTAGATGGCGCTTTTggtgatgctgc > 1:27619‑M1/1‑128 (MQ=255) ctggcacggctgggacggaagtcgctgtcgttctcaaaatcggtggagctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccgGCGCTTTTTATCCGGTGCGCCGTa < 2:149833‑M2/24‑1 (MQ=255) ggctgggacggaagtcgctgtcgttctcaaaatcggtggagctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccgGCGCTTTTTATCCGGTGCGCCGTAAAAcccc < 2:638556‑M2/31‑1 (MQ=255) gctgggacggaagtcgctgtcgttctcaaaatcggtggagctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccgGCGCTTTTTATCCGGTGCGCCGTAAAACCCCa > 1:647080‑M2/108‑139 (MQ=255) cGCCAATGGCTTTCGAAAATATTAAACAAGTTATTGATGACATGGCGACCGATGCCACCATGTTTGACGTTAACAAAAAGTAATTCCAGACGCGCCATCGTTAGATGGCGCTTTTggtgatgctgccaacttactgatt < 2:195483‑M1/139‑25 (MQ=255) cGCCAATGGCTTTCGAAAATATTAAACAAGTTATTGATGACATGGCGACCGATGCCACCATGTTTGACGTTAACAAAAAGTAATTCCAGACGCGCCATCGTTAGATGGCGCTTTTggtgatgctgccaacttactgatt < 2:163742‑M1/139‑25 (MQ=255) tttCGAAAATATTAAACAAGTTATTGATGACATGGCGACCGATGCCACCATGTTTGACGTTAACAAAAAGTAATTCCAGACGCGCCATCGTTAGATGGCGCTTTTggtgatgctgccaacttactgatttagtgtatga < 2:196075‑M1/139‑35 (MQ=255) aagtcgctgtcgttctcaaaatcggtggagctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccgGCGCTTTTTATCCGGTGCGCCGTAAAACCCCATCCTTCAggg < 2:547071‑M2/42‑1 (MQ=255) aagtcgctgtcgttctcaaaatcggtggagctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccgGCGCTTTTTATCCGGTGCGCCGTAAAACCCCATCCTTCAggg < 2:647080‑M2/42‑1 (MQ=255) agtcgctgtcgttctcaaaatcggtggagctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccgGCGCTTTTTATCCGGTGCGCCGTAAAACCCCATCCTTCAGGGc > 1:722947‑M2/97‑139 (MQ=255) gtcgctgtcgttctcaaaatcggtggagctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccgGCGCTTTTTATCCGGTGCGCCGTAAAACCCCATCCTTCAGGGCg < 2:178943‑M2/44‑1 (MQ=255) aaCAAGTTATTGATGACATGGCGACCGATGCCACCATGTTTGACGTTAACAAAAAGTAATTCCAGACGCGCCATCGTTAGATGGCGCTTTTggtgatgctgccaactta < 1:269301‑M1/109‑19 (MQ=255) aaCAAGTTATTGATGACATGGCGACCGATGCCACCATGTTTGACGTTAACAAAAAGTAATTCCAGACGCGCCATCGTTAGATGGCGCTTTTggtgatgctgccaactta > 2:269301‑M1/1‑91 (MQ=255) gaCATGGCGACCGATGCCACCATGTTTGACGTTAACAAAAAGTAATTCCAGACGCGCCATCGTTAGATGGCGCTTTTggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggctt > 2:29265‑M1/1‑77 (MQ=255) aCATGGCGACCGATGCCACCATGTTTGACGTTAACAAAAAGTAATTCCAGACGCGCCATCGTTAGATGGCGCTTTTggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttc > 1:237768‑M1/1‑76 (MQ=255) aCATGGCGACCGATGCCACCATGTTTGACGTTAACAAAAAGTAATTCCAGACGCGCCATCGTTAGATGGCGCTTTTggtgatgctgccaacttactgatt > 1:469511‑M1/1‑76 (MQ=255) aCATGGCGACCGATGCCACCATGTTTGACGTTAACAAAAAGTAATTCCAGACGCGCCATCGTTAGATGGCGCTTTTggtgatgctgccaacttactgatt < 2:469511‑M1/100‑25 (MQ=255) ggCGACCGATGCCACCATGTTTGACGTTAACAAAAAGTAATTCCAGACGCGCCATCGTTAGATGGCGCTTTTggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtt > 2:781104‑M1/1‑72 (MQ=255) atgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccgGCGCTTTTTATCCGGTGCGCCGTAAAACCCCATCCTTCAGGGCGGGGATATAAGGCGCGGTTTTCCACCTGACCAg > 1:41915‑M2/64‑139 (MQ=255) aCCGATGCCACCATGTTTGACGTTAACAAAAAGTAATTCCAGACGCGCCATCGTTAGATGGCGCTTTTggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttcta > 2:376778‑M1/1‑68 (MQ=255) gATGCCACCATGTTTGACGTTAACAAAAAGTAATTCCAGACGCGCCATCGTTAGATGGCGCTTTTggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatca < 2:51557‑M1/139‑75 (MQ=255) aTGCCACCATGTTTGACGTTAACAAAAAGTAATTCCAGACGCGCCATCGTTAGATGGCGCTTTTggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcag > 2:630086‑M1/1‑64 (MQ=255) aTGCCACCATGTTTGACGTTAACAAAAAGTAATTCCAGACGCGCCATCGTTAGATGGCGCTTTTggtgatgctgccaacttactgat > 2:263158‑M1/1‑64 (MQ=255) aTGCCACCATGTTTGACGTTAACAAAAAGTAATTCCAGACGCGCCATCGTTAGATGGCGCTTTTggtgatgctgccaacttactgat < 1:263158‑M1/87‑24 (MQ=255) catcgggcattatctgaacataaaacactatcaataagttggagtcattaccgGCGCTTTTTATCCGGTGCGCCGTAAAACCCCATCCTTCAGGGCGGGGATATAAGGCGCGGTTTTCCACCTGACCAGGTGTTTGCtg < 2:602086‑M2/86‑1 (MQ=255) catcgggcattatcagaacataaaacactatcaataagttggagtcattaccgGCGCTTTTTTTCCGGTGCGCCGTAAAACCCCATCGTTCAGGGCGGGGATATAAGGCGCGGTCTTCCACCTGACCAGGTTTTTGCtg < 2:491924‑M2/86‑1 (MQ=255) ggcattatctgaacataaaacactatcaataagttggagtcattaccgGCGCTTTTTATCCGGTGCGCCGTAAAACCCCATCCTTCAGGGCGGGGATATAAGGCGCGGTTTTCCACCTGACCAGGTGTTTGCTgttgtt < 1:773331‑M2/91‑1 (MQ=255) aTGTTTGACGTTAACAAAAAGTAATTCCAGACGCGCCATCGTTAGATGGCGCTTTTggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccct < 1:376778‑M1/139‑84 (MQ=255) tttGACGTTAACAAAAAGTAATTCCAGACGCGCCATCGTTAGATGGCGCTTTTggtgatgctgccaacttactgatttagtgtatgatggtgtttttgagg < 2:205854‑M1/101‑49 (MQ=255) tttGACGTTAACAAAAAGTAATTCCAGACGCGCCATCGTTAGATGGCGCTTTTggtgatgctgccaacttactgatttagtgtatgatggtgtttttgagg > 1:205854‑M1/1‑53 (MQ=255) tttGACGTTAACAAAAAGTAATTCCAGACGCGCCATCGTTAGATGGCGCTTTTggtgatgctgccaa < 2:272150‑M1/67‑15 (MQ=255) tttGACGTTAACAAAAAGTAATTCCAGACGCGCCATCGTTAGATGGCGCTTTTggtgatgctgccaa > 1:272150‑M1/1‑53 (MQ=255) tctgaacataaaacactatcaataagttggagtcattaccgGCGCTTTTTATCCGGTGCGCCGTAAAACCCCATCCTTCAGGGCGGGGATATAAGGCGCGGTTTTCCACCTGACCAGGTGTTTGCtg > 1:167374‑M2/42‑127 (MQ=255) tctgaacataaaacactatcaataagttggagtcattaccgGCGCTTTTTATCCGGTGCGCCGTAAAACCCCATCCTTCAGGGCGGGGATATAAGGCGCGGTTTTCCACCTGACCAGGTGTTTGCtg < 2:167374‑M2/86‑1 (MQ=255) ttAACAAAAAGTAATTCCAGACGCGCCATCGTTAGATGGCGCTTTTggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgttcagc < 1:29265‑M1/139‑94 (MQ=255) aacataaaacactatcaataagttggagtcattaccgGCGCTTTTTATCCGGTGCGCCGTAAAACCCCATCCTTCAGGGCg < 2:536833‑M2/44‑1 (MQ=255) aacataaaacactatcaataagttggagtcattaccgGCGCTTTTTATCCGGTGCGCCGTAAAACCCCATCCTTCAGGGCg > 1:536833‑M2/38‑81 (MQ=255) aacataaaacactatcaataagttggagtcattaccgGCGCTTTTTATCCGGTGCGCCGTAAAACCCCATCCTTCAGGGCGGGGATATAAGGCGCGGTTTTCCACCTGACCAg < 1:453912‑M2/76‑1 (MQ=255) aacataaaacactatcaataagttggagtcattaccgGCGCTTTTTATCCGGTGCGCCGTAAAACCCCATCCTTCAGGGCGGGGATATAAGGCGCGGTTTTCCACCTGACCAg > 2:453912‑M2/38‑113 (MQ=255) aacataaaacactatcaataagttggagtcattaccgGCGCTTTTTATCCGGTGCGCCGTAAAACCCCATCCTTCAGGGCGGGGATATAAGGCGCGGTTTTCCACCTGACCAGGTGTTTGCTGTTGTTCAATGTATTgg > 1:516175‑M2/38‑139 (MQ=255) aaCAAAAAGTAATTCCAGACGCGCCATCGTTAGATGGCGCTTTTggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgttcagcta > 1:116388‑M1/1‑44 (MQ=255) aaCAAAAAGTAATTCCAGACGCGCCATCGTTAGATGGCGCTTTTggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgttcagcta > 1:676015‑M1/1‑44 (MQ=255) aCAAAAAGTAATTCCAGACGCGCCATCGTTAGATGGCGCTTTTggtgatgctgccaactaactgatttggtgtatgattgtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgttcagctac > 1:66076‑M1/1‑43 (MQ=255) taattccaGACGCGCCATCGTTAGATGGCGCTTTTggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgttcagctactgacgggg < 2:27619‑M1/136‑105 (MQ=255) caataagttggagtcattaccgGCGCTTTTTATCCGGTGCGCCGTAAAACCCCATCCTTCAGGGCGGGGATATAAGGCGCGGTTTTCCACCTGACCAGGTGtt > 2:69845‑M2/23‑103 (MQ=255) caataagttggagtcattaccgGCGCTTTTTATCCGGTGCGCCGTAAAACCCCATCCTTCAGGGCGGGGATATAAGGCGCGGTTTTCCACCTGACCAGGTGtt < 1:69845‑M2/81‑1 (MQ=255) ttggagtcattaccgGCGCTTTTTATCCGGTGCGCCGTAAAACCCCATCCTTCAGGGCGGGGATATAAGGCGCGGTTTTCCACCTGACCAGGTGTTTGCTGTTGTTCAATGTATTGGCGGATGACGGATATTGGCGCAc < 2:516175‑M2/124‑1 (MQ=255) ggagtcattaccgGCGCTTTTTATCCGGTGCGCCGTAAAACCCCATCCTTCAGGGCGGGGATATAAGGCGCGGTTTTCCACCTGACCAGGTGTTTGCtg < 1:554267‑M2/86‑1 (MQ=255) ggagtcattaccgGCGCTTTTTATCCGGTGCGCCGTAAAACCCCATCCTTCAGGGCGGGGATATAAGGCGCGGTTTTCCACCTGACCAGGTGTTTGCtg > 2:554267‑M2/14‑99 (MQ=255) ggagtcattaccgGCGCTTTTTATCCGGTGCGCCGTAAAACCCCATCCTTCAGGGCGGGGATATAAGGCGCGGTTTTCCACCTGACCAGGTGTTTGCTGTTGTTCAATGTATTGGCGGATGACGGATATTGGCGCACCt > 1:427188‑M2/14‑139 (MQ=255) ggagtcattaccgGCGCTTTTTATCCGGTGCGCCGTAAAACCCCATCCTTCAGGGCGGGGATATAAGGCGCGGTTTTCCACCTGACCAGGTGTTTGCTGTTGTTCAATGTATTGGCGGATGACGGATATTGGCGCACCt > 2:419357‑M2/14‑139 (MQ=255) ggagtcattaccgGCGCTTTTTATCCGGTGCGCCGTAAAACCCCATCCTTCAGGGCGGGGATATAAGGCGCGGTTTTCCACCTGACCAGGTGTTTGCTGTTGTTCAATGTATTGGCGGATGACGGATATTGGCGCACCt > 1:339419‑M2/14‑139 (MQ=255) ggagtcattaccgGCGCTTTTTATCCGGTGCGCCGTAAAACCCCATCCTTCAGGGCGGGGATATAAGGCGCGGTTTTCCACCTGACCAGGTGTTTGCTGTTGTTCAATGTATTGGCGGATGACGGATATTGGCGCACCt > 1:636337‑M2/14‑139 (MQ=255) agtcattaccgGCGCTTTTTATCCGGTGCGCCGTAAAACCCCATCCTTCAGGGCGGGGATATAAGGCGCGGTTTTCCACCTGACCAGGTGTTTGCTGTTGTTCAATGTATTGGCGGATGACGGATATTGGCGCACCTcc > 1:339379‑M2/12‑139 (MQ=255) attaccgGCGCTTTTTATCCGGTGCGCCGTAAAACCCCATCCTTCAGGGCGGGGATATAAGGCGCGGTTTTCCACCTGACCAGGTGTTTg < 1:313014‑M2/83‑1 (MQ=255) attaccgGCGCTTTTTATCCGGTGCGCCGTAAAACCCCATCCTTCAGGGCGGGGATATAAGGCGCGGTTTTCCACCTGACCAGGTGTTTg > 2:313014‑M2/8‑90 (MQ=255) attaccgGCGCTTTTTATCCGGTGCGCCGTAAAACCCCATCCTTCAGGGCGGGGATATAAGGCGCGGTTTTCCACCTGACCAGGTGTTTGCTGTTGTTCAATGTATTGGCGGATGACGGATATTGGCGCACCTCCGCAg > 1:241621‑M2/8‑139 (MQ=255) gcgcTTTTTATCCGGTGCGCCGTAAAACCCCATCCTTCAGGGCGGGGATATAAGGCGCGGTTTTCCACCTGACCAGGTGTTTGCTGTTGTTCAATGTATTGGCGGATGACGGATATTGGCGCACCTCCGCAGCTACTgg > 1:268362/1‑139 (MQ=255) cTTTTTATCCGGTGCGCCGTAAAACCCCATCCTTCAGGGCGGGGATATAAGGCGCGGTTTTCCACCTGACCAGGTGTTTGCTGTTGTTCaa < 2:96580/91‑1 (MQ=255) cTTTTTATCCGGTGCGCCGTAAAACCCCATCCTTCAGGGCGGGGATATAAGGCGCGGTTTTCCACCTGACCAGGTGTTTGCTGTTGTTCaa > 1:96580/1‑91 (MQ=255) tttttATCCGGTGCGCCGTAAAACCCCATCCTTCAGGGCGGGGATATAAGGCGCGGTTTTCCACCTGACCAGGTGTTTGCTGTTGTTCAATGTATTGGCGGATGACGGATATTGGCGCACCTCCGCAGCTACTGGCaaa < 1:419357/139‑1 (MQ=255) tttggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgttcagctactgacggggtggtgcgtaacggcaaaagcaccgccggacat < 2:676015‑M1/139‑137 (MQ=255) | AAAGACCTGAATAACGAAAGTACGCCAATGGCTTTCGAAAATATTAAACAAGTTATTGATGACATGGCGACCGATGCCACCATGTTTGACGTTAACAAAAAGTAGTTCCAGACGCGCCATCGTTAGATGGCGCTTTTTATCCGGTGCGCCGTAAAACCCCATCCTTCAGGGCGGGGATATAAGGCGCGGTTTTCCACCTGACCAGGTGTTTGCTGTTGTTCAATGTATTGGCGGATGACGGATATTGGCGCACCTCCGCAGCTACTGGCAAAA > NC_000913/1503021‑1503293 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |