| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 1207790 = | 9 (0.230) | 51 (1.530) | 34/200 | 0.1 | 87.4% | coding (290/630 nt) | stfP | e14 prophage, uncharacterized protein |
| ? | NC_000913 | 1209619 = | 7 (0.210) | pseudogene (1/501 nt) | stfE | pseudogene, e14 prophage, side tail fiber protein fragment family,Phage or Prophage Related | |||||
CCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGC‑TTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAATGCGCTGAA > NC_000913/1209493‑1209752 | cattccacccccactgaatgattactgattgctcaataccaccaatcataaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAAt < 1:568578‑M2/13‑1 (MQ=255) actgaatgattactgattgctcaataccaccaatcataaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACa < 1:661325‑M2/25‑1 (MQ=255) ctgaatgattactgattgctcaataccaccaatcataaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACaa > 2:583046‑M2/114‑139 (MQ=255) ctgaatgattactgattgctcaataccaccaatcataaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACaa > 2:214657‑M2/114‑139 (MQ=255) gctcaataccaccaatcataaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTcc > 1:631199‑M2/97‑139 (MQ=255) gctcaataccaccaatcataaccggcatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTcc > 1:167556‑M2/97‑139 (MQ=255) ctcaataccaccaatcataaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAAt < 1:803008‑M2/13‑1 (MQ=255) ctcaataccaccaatcataaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAAt > 2:803008‑M2/96‑108 (MQ=255) aataccaccaatcataaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGC‑t > 1:21043‑M2/93‑139 (MQ=255) ccaatcataaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGC‑TTTTACCa > 1:667255‑M2/86‑139 (MQ=255) ccaatcataaccggaatagctatgaaagcggtacgtcctaatgtagccgttgctgcattgagttttgctccttcgcccaacccaaCGCTTACGACAATGAAGAAATAACAAGCAAATGGCATCATTCCTGC‑TTTTACCa > 1:72904‑M2/86‑139 (MQ=255) caatcataaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGC‑TTTTACCAg < 1:287567‑M2/55‑1 (MQ=255) atcataaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGC‑TTTTACCAggg < 2:183992‑M2/57‑1 (MQ=255) cataaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGC‑TTTTACCAggggg < 1:583046‑M2/59‑1 (MQ=255) cagccagcCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGC‑TTTTACCAggggg > 2:240098/1‑139 (MQ=255) tatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGaaaa > 2:770280‑M2/72‑83 (MQ=255) tatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGaaaa < 1:770280‑M2/12‑1 (MQ=255) tatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATCACAAGCAAATGGCATCATTCCTGC‑TTTTACCAGGGGGATTTAACAt > 2:195451‑M2/72‑139 (MQ=255) tatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGC‑TTTTACCAgg < 2:17962‑M2/56‑1 (MQ=255) tatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAAGGAAGAAATAACAAGCAAATGGCATCATTCCTGC‑TTTTACCAgg > 1:17962‑M2/72‑127 (MQ=255) tgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTATATGAAAATGAAGAAATAACAAGCAAATGTCATCATTCCTGC‑TTTTACCAGGGAGATTTAACATGCTTATTg > 2:74098‑M2/64‑139 (MQ=255) gaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGC‑TTTTACCAGGGGGATTTAACATGCTTATTgg < 2:531324‑M2/77‑1 (MQ=255) aaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTc < 2:45689‑M2/42‑1 (MQ=255) aaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTc > 1:45689‑M2/62‑103 (MQ=255) aaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGC‑TTTTACCAGGGGGATTTAACATGCTTATTGGc > 1:42899‑M2/62‑139 (MQ=255) aaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGC‑TTTTACCAGGGGGATTTAACATGCTTATTGGc > 2:757941‑M2/62‑139 (MQ=255) aaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGC‑TTTTACCAGGGGGATTTAACATGCTTATTGGCt < 2:349037‑M2/79‑1 (MQ=255) ggCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGC‑TTTTACCAGGGGGATTTAACATGCTTATTg < 2:192691/135‑1 (MQ=255) ggCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGC‑TTTTACCAGGGGGATTTAACATGCTTATTg > 1:192691/1‑135 (MQ=255) ggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATg < 2:722022‑M2/14‑1 (MQ=255) ggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATg > 1:722022‑M2/57‑70 (MQ=255) ggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGC‑TTTTACCAGGGGGATTTAACATGCTTATTGGCTATGt > 2:278886‑M2/57‑139 (MQ=255) gtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAAt < 2:64803‑M2/21‑1 (MQ=255) gtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAAt > 1:64803‑M2/56‑76 (MQ=255) gtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGC‑TTTTACCAgg > 1:388539‑M2/56‑111 (MQ=255) gtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGC‑TTTTACCAgg < 2:388539‑M2/56‑1 (MQ=255) gtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaacaaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCTTCATTCCTGC‑TTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTa < 1:154919‑M2/84‑1 (MQ=255) tgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGC‑TTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTa > 2:546512‑M2/55‑138 (MQ=255) tgcgtcctaatgtagccgttgctgcattgagttttgctacttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGC‑TTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTa < 1:546512‑M2/84‑1 (MQ=255) gggACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGC‑TTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAAt < 2:352083/139‑1 (MQ=255) gccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGC‑TTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAAt > 1:175158‑M2/41‑139 (MQ=255) gccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGC‑TTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAAt < 1:195451‑M2/99‑1 (MQ=255) gccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGC‑TTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAAt > 2:442597‑M2/41‑139 (MQ=255) ccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGCAGAAATAACAAGCAAATGGCATCATTCCAGC‑TTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATg > 1:115353‑M2/40‑139 (MQ=255) ccgttgctgcatcgagttttgctccttctcccaaaccaaCGTTTATGAAAATGTAGAAATAACAAGCAAATGGCATCATTCCTGC‑TTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATg > 1:360638‑M2/40‑139 (MQ=255) gttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGC‑TTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATc > 1:192661‑M2/38‑129 (MQ=255) gttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGC‑TTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATc < 2:192661‑M2/92‑1 (MQ=255) gttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGC‑TTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGAc < 1:278886‑M2/102‑1 (MQ=255) gttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGC‑TTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGAc < 2:477336‑M2/102‑1 (MQ=255) gttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGC‑TTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGAc < 2:667255‑M2/102‑1 (MQ=255) acacCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGC‑TTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCATCAAATGAc < 1:345928/139‑1 (MQ=255) tgctgcattgagttttgctccttgtcccaatccaaTGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGC‑TTTTACCACGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCa < 1:74098‑M2/104‑1 (MQ=255) tgctgcattgagttttgctccttctcccaaactaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGC‑TTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCa > 2:203015‑M2/36‑139 (MQ=255) cattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGC‑TTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAaca < 1:214657‑M2/109‑1 (MQ=255) cattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGC‑TTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAaca < 2:358827‑M2/109‑1 (MQ=255) aGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGC‑TTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAacac < 2:191607/139‑1 (MQ=255) tAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGC‑TTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGa > 1:249848/1‑139 (MQ=255) tgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGC‑TTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACa > 2:60202‑M2/21‑139 (MQ=255) cttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGC‑TTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTa < 2:175158‑M2/124‑1 (MQ=255) cttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGC‑TTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTa < 1:410999‑M2/124‑1 (MQ=255) cttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGC‑TTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTa < 1:240098‑M2/124‑1 (MQ=255) ttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTa < 2:21043‑M2/125‑1 (MQ=255) tctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGC‑TTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCa < 2:37004‑M2/104‑1 (MQ=255) tctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGC‑TTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCa > 1:37004‑M2/14‑117 (MQ=255) ctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGC‑TTTTACCAGGGGGATTTAACATGCTTATTgg > 1:753287‑M2/13‑89 (MQ=255) ctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGC‑TTTTACCAGGGGGATTTAACATGCTTATTgg < 2:753287‑M2/77‑1 (MQ=255) cccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGC‑TTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAATgcg < 2:286070‑M2/129‑1 (MQ=255) cccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGC‑TTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAATgcg > 1:286070‑M2/11‑139 (MQ=255) accaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGC‑TTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAATGCGCTGaa < 2:610425‑M2/134‑1 (MQ=255) accaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGC‑TTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAATGCGCTGaa > 1:338175‑M2/6‑139 (MQ=255) | CCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGC‑TTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAATGCGCTGAA > NC_000913/1209493‑1209752 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |