| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 88,060 | A→G | G11G (GGA→GGG) | cra → | transcriptional repressor‑activator for carbon metabolism |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 88,060 | 0 | A | G | 100.0% | 133.8 / NA | 38 | G11G (GGA→GGG) | cra | transcriptional repressor‑activator for carbon metabolism |
| Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (19/19); total (19/19) | |||||||||||
GTTGCCGCAGTTAATTTTCTGCGCTTAGATGTTAATGAATTTAACCCATACCAGTACAATGGCTATGGTTTTTACATTTTACGCAAGGGGCAATTGTGAAACTGGATGAAATCGCTCGGCTGGCGGGAGTGTCGCGGACCACTGCAAGCTATGTTATTAACGGCAAAGCGAAGCAATACCGTGTGAGCGACAAAACCGTTGAAAAAGTCATGGCTGTGGTGCGTGAGCACAATTACCACCCGAACGCCGTGGCAGCTGGGC > NC_000913/87933‑88193 | gTTGCCGCAGTTAATTTTCTGCGCTTAGATGTTAATGAATTTAACCCATACCAGTACAATGGCTATGGTTTTTACATTTTACGCAAGGGGCAATTGTGAAACTGGATGAAATCGCTCGGCTGGCGGGGGTGTCGCGGAc < 2:414703/139‑1 (MQ=255) ttGCCGCAGTTAATTTTCTGCGCTTAGATGTTAATGAATTTAACCCATACCAGTACAATGGCTATGGTTTTTACATTTTACGCAAGGGGCAATTGTGAAACTGGATGAAATCGCTCGGCTGGCGGGGGTGTCGCGGAcc > 1:701953/1‑139 (MQ=255) cTGCGCTTAGATGTTAATGAATTTAACCCATACCAGTACAATGGCTATGGTTTTTACATTTTACGCAAGGGGCAATTGTGAAACTGGATGAAATCGCTCGGCTGGCGGGGGTGTCGCGGACCACTGCAAGCTATGttat > 2:334666/1‑139 (MQ=255) tGTTAATGAATTTAACCCATACCAGTACAATGGCTATGGTTTTTACATTTTACGCAAGGGGCAATTGTGAAACTGGATGAAATCGCTCGGCTGGCGGGGGTGTCGCGGACCACTGCAAGCTATGTTATTAACGGCAAAg < 2:663364/139‑1 (MQ=255) tGTTAATGAATTTAACCCATACCAGTACAATGGCTATGGTTTTTACATTTTACGCAAGGGGCAATTGTGAAACTGGATGAAATCGCTCGGCTGGCGGGGGTGTCGCGGACCACTGCAAGCTATGTTATTAACGGCAAAg < 1:52511/139‑1 (MQ=255) aaTGAATTTAACCCATACCAGTACAATGGCTATGGTTTTTACATTTTACGCAAGGGGCAATTGTGAAACTGGATGAAATCGCTCGGCTGGCGGGGGTGTCGCGGACCACTGCAAGCTATGTTATTAACGGCAAAGCGaa > 2:559291/1‑139 (MQ=255) aCCAGTACAATGGCTATGGTTTTTACATTTTACGCAAGGGGCAATTGTGAAACTGGATGAAATCGCTCGGCTGGCGGGGGTGTCGCGGACCACTGCAAGCTATGTTATTAACGGCAAAGCGAAGCAATAACGTGTGAGc > 1:67454/1‑139 (MQ=255) tACAATGGCTATGGTTTTTACATTTTACGCAAGGGGCAATTGTGAAACTGGATGAAATCGCTCGGCTGGCGGGGGTGTCGCGGAc < 1:170189/85‑1 (MQ=255) tACAATGGCTATGGTTTTTACATTTTACGCAAGGGGCAATTGTGAAACTGGATGAAATCGCTCGGCTGGCGGGGGTGTCGCGGAc > 2:170189/1‑85 (MQ=255) tACAATGGCTATGGTTTTTACATTTTACGCAAGGGGCAATTGTGAAACTGGATGAAATCGCTCGGCTGGCGGGGGTGTCGCGGACCACTGCAAGCTATGTTATTAACGGCAAAg < 2:144589/114‑1 (MQ=255) tACAATGGCTATGGTTTTTACATTTTACGCAAGGGGCAAATGTGAAACTGGATGAAATCGCTCGGCTGGCGGGGGTGTCGCGGACCACTGCAAGCTATGTTATTAACGGCAAAg > 1:144589/1‑114 (MQ=255) aTGGCTATGGTTTTTACATTTTACGCAAGGGGCAATTGTGAAACTGGATGAAATCGCTCGGCTGGCGGGGGTGTCGCGGACCACTGCAAGCTATGTTATTAACGGCAAAGCGAAg < 2:772391/115‑1 (MQ=255) aTGGCTATGGTTTTTACATTTTACGCAAGGGGCAATTGTGAAACTGGATGAAATCGCTCGGCTGGCGGGGGTGTCGCGGACCACTGCAAGCTATGTTATTAACGGCAAAGCGAAg > 1:772391/1‑115 (MQ=255) aTGGCTATGGTTTTTACATTTTACGCAAGGGGCAATTGTGAAACTGGATGAAATCGCTCGGCTGGCGGGGGTGTCGCGGACCACTGCAAGCTATGTTATTAACGGCAAAGCGAAGCAATACCGTGTGAGCGACAAAAcc > 1:724391/1‑139 (MQ=255) tGGCTATGGTTTTTACATTTTACGCAAGGGGCAATTGTGAAACTGGATGAAATCGCTCGGCTGGCGGGGGTGTCGCGGACCACTGCAAGCTATGTTATTAACGGCAAAg > 1:257729/1‑109 (MQ=255) tGGCTATGGTTTTTACATTTTACGCAAGGGGCAATTGTGAAACTGGATGAAATCGCTCGGCTGGCGGGGGTGTCGCGGACCACTGCAAGCTATGTTATTAACGGCAAAg < 2:257729/109‑1 (MQ=255) tGGCTATGGTTTTTACATTTTACGCAAGGGGCAATTGTGAAACTGGATGAAATCGCTCGGCTGGCGGGGGTGTCGCGGACCACTGCAAGCTATGTTATTAACGGCAAAGCGAAGCAATACCGTGTGAGCGACAAAACCg > 2:322588/1‑139 (MQ=255) tGGCTATGGTTTTTACATTTTACGCAAGGGGCAATTGTGAAACTGGATGAAATCGCTCGGCTGGCGGGGGTGTCGCGGACCACTGCAAGCTATGTTATTAACGGCAAAGCGAAGCAATACCGTGTGAGCGACAAAACCg > 1:10151/1‑139 (MQ=255) gCTATGGTTTTTACATTTTACGCAAGGGGCAATTGTGAAACTGGATGAAATCGCTCGGCTGGCGGGGGTGTCGCGGACCACTGCAAGCTATGTTATTAACGGCAAAGCGAAGCAATACCGTGTGAGCGACAAAACCGtt > 2:258931/1‑139 (MQ=255) aTGGTTTTTACATTTTACGCAAGGGGCAATTGTGAAACTGGATGAAATCGCTCGGCTGGCGGGGGTGTCGCGGACCACTGCAAGCTATGTTATTAACGGCAAAGCGAAGCAATACCGTGTGAGCGACAAAACCGTTGaa > 2:371715/1‑139 (MQ=255) ttACATTTTACGCAAGGGGCAATTGTGAAACTGGATGAAATCGCTCGGCTGGCGGGGGTGTCGCGGACCACTGCAAGCTATGTTATTAACGGCAAAGCGAAGCAATACCGTGTGAGCGACAAAACCGTTGAAAAAGTCa > 1:285512/1‑139 (MQ=255) cATTTTACGCAAGGGGCAATTGTGAAACTGGATGAAATCGCTCGGCTGGCGGGGGTGTCGCGGACCACTGCAAGCTATGTTATTAACGGCAAAGCGAAGCAATACCGTGTGAGCGACAAAACCGTTGAAAAAGTCATgg < 2:701953/139‑1 (MQ=255) tttACGCAAGGGGCAATTGTGAAACTGGATGAAATCGCTCGGCTGGCGGGGGTGTCGCGGACCACTGCa < 1:644779/69‑1 (MQ=255) tttACGCAAGGGGCAATTGTGAAACTGGATGAAATCGCTCGGCTGGCGGGGGTGTCGCGGACCACTGCa > 2:644779/1‑69 (MQ=255) ttACGCAAGGGGCAATTGTGAAACTGGATGAAATCGCTCGGCTGGCGGGGGTGTCGCGGACCACTGCAAGCTATGTTATTAACGGCAAAGCGAAGCAATACCGTGTGAGCGACAAAACCGTTGAAAAAGTCATGGCtgt < 1:371715/139‑1 (MQ=255) ggggCAATTGTGAAACTGGATGAAATCGCTCGGCTGGCGGGGGTGTCGCGGACCACTGCAAGCTATGTTATTAACGGCAAAGCGAAGCAATACCGTGTGAGCGACAAAACCGTTGAAAAAGTCATGGCTGTGGTGCGTg < 1:322588/139‑1 (MQ=255) gggCAATTGTGAAACTGGATGAAATCGCTCGGCTGGCGGGGGTGTCGCGGACCACTGCAAGCTATGTTATTAACGGCAAAGCGAAGCAATACCGTGTGAGCGACAAAACCGTTGAAAAAGTCATGGCTGTGGTGCGTGa < 1:79707/139‑1 (MQ=255) ggCAATTGTGAAACTGGATGAAATCGCTCGGCTGGCGGGGGTGTCGCGGACCACTGCAAGCTATGTTATTAACGGCAAAGCGAAGCAATACCGTGTGAGCGACAAAACCGTTGAAAAAGTCATGGCTGTGGTGCGTGAg < 2:665465/139‑1 (MQ=255) ggCAATTGTGAAACTGGATGAAATCGCTCGGCTGGCGGGGGTGTCGCGGACCACTGCAAGCTATGTTATTAACGGCAAAGCGAAGCAATACCGTGTGAGCGACAAAACCGTTGAAAAAGTCATGGCTGTGGTGCGTGAg < 2:383499/139‑1 (MQ=255) gCAATTGTGAAACTGGATGAAATCGCTCGGCTGGCGGGGGTGTCGCGGACCACTGCAAGCTATGTTATTAACGGCAAAGCGAAGCAATACCGTGTGAGCGACAAAACCGTTGAAAAAGTCATGGCTGTGGTGCGTGAGc < 1:334666/139‑1 (MQ=255) tgtgAAACTGGATGAAATCGCTCGGCTGGCGGGGGTGTCGCGGACCACTGCAAGCTATGTTATTAACGGCAAAGCGAAGCAATACCGTGTGAGCGACAAAACCGTTGAAAAAGTCATGGCTGTGGTGCGTGAGCACAAt < 1:92639/139‑1 (MQ=255) tgAAACTGGATGAAATCGCTCGGCTGGCGGGGGTGTCGCGGACCACTGCAAGCTATGTTATTAACGGCAAAGCGAAGCAATACCGTGTGAGCGACAAAACCGTTGAAAAAGTCATGGCTGTGGTGCGTGAGCACAATTa > 1:314770/1‑139 (MQ=255) aaaCTGGATGAAATCGCTCGGCTGGCGGGGGTGTCGCGGACCACTGCAAGCTATGTTATTAACGGCAAAGCGAAGCAATACCGTGTGAGCGACAAAACCGTTGAAAAAGTCATg > 2:600449/1‑114 (MQ=255) aaaCTGGATGAAATCGCTCGGCTGGCGGGGGTGTCGCGGACCACTGCAAGCTATGTTATTAACGGCAAAGCGAAGCAATACCGTGTGAGCGACAAAACCGTTGAAAAAGTCATg < 1:600449/114‑1 (MQ=255) gATGAAATCGCTCGGCTGGCGGGGGTGTCGCGGACCACTGCAAGc > 2:437250/1‑45 (MQ=255) gATGAAATCGCTCGGCTGGCGGGGGTGTCGCGGACCACTGCAAGc < 1:437250/45‑1 (MQ=255) gATGAAATCGCTCGGCTGGCGGGGGTGTCGCGGACCACTGCAAGCTATGTTATTAACGGCAAAGCGAAGCAATACCGTGTGAGCGACAAAACCGTTGAAAAAGTCATGGCTGTGGTGCGTGAGCACAATTACCACCCGa > 1:683749/1‑139 (MQ=255) gCGGGGGTGTCGCGGACCACTGCAAGCTATGTTATTAACGGCAAAGCGAAGCAATACCGTGTGAGCGACAAAACCGTTGAAAAAGTCATGGCTGTGGTGCGTGAGCACAATTACCACCCGAACGCCGTGGCAGCTGGGc < 2:10151/139‑1 (MQ=255) | GTTGCCGCAGTTAATTTTCTGCGCTTAGATGTTAATGAATTTAACCCATACCAGTACAATGGCTATGGTTTTTACATTTTACGCAAGGGGCAATTGTGAAACTGGATGAAATCGCTCGGCTGGCGGGAGTGTCGCGGACCACTGCAAGCTATGTTATTAACGGCAAAGCGAAGCAATACCGTGTGAGCGACAAAACCGTTGAAAAAGTCATGGCTGTGGTGCGTGAGCACAATTACCACCCGAACGCCGTGGCAGCTGGGC > NC_000913/87933‑88193 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |