| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 1,744,786 | C→T | Q444* (CAA→TAA) | mdtK → | multidrug efflux system transporter |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,744,786 | 0 | C | T | 100.0% | 50.9 / NA | 17 | Q444* (CAA→TAA) | mdtK | multidrug efflux system transporter |
| Reads supporting (aligned to +/- strand): ref base C (0/0); new base T (12/5); total (12/5) | |||||||||||
CTATATTCTGGCACTGACCGATCTGGTCGTTGAACCTATGGGGCCAGCAGGCTTCTGGATAGGCTTTATTATTGGCCTGACGTCGGCAGCCATTATGATGATGTTGCGTATGCGGTTCCTGCAACGTCTGCCGTCAGCCATCATTCTGCAACGAGCATCCCGCTAATAAAGACAAGGCGCAACCTTCACGGGTTGCGCCTGTATTTTTACGCAGGCTGGAGCGTTGCGCCAATCCCGTCTTCGTCTGGCTGTAAT > NC_000913/1744665‑1744919 | cTATATTCTGGCACTGACCGATCTGGTCGTTGAACCTATGGGGCCAGCAGGCTTCTGGATAGGCTTTATTATTGGTCTGACGTCGGCAGCCATTATGATGATGTTGCGTATGCGGTTCCTGTAACGTCTGCCGTCAGcc > 1:627571/1‑139 (MQ=255) cTGACCGATCTGGTCGTTGAACCTATGGGGCCAGCAGGCTTCTGGATAGGCTTTATTATTGGTCTGACGTCGGCAGCCATTATGATGATGTTGCGTATGCGGTTCCTGTAACGTCTGCCGTCAGCCATCATTCTGCAAc > 1:412034/1‑139 (MQ=255) tGGTCGTTGAACCTATGGGGCCAGCAGGCTTCTGGATAGGCTTTATTATTGGTCTGACGTCGGCAGCCATTATGATGATGTTGCGTATGCGGTTCCTGTAACGTCTGCCGTCAGCCATCATTCTGCAACGAGCATCCCg < 1:769810/139‑1 (MQ=255) tttATTATTGGTCTGACGTCGGCAGCCATTATGATGATGTTGCGTATGCGGTTCCTGTAACGTCTGCCGTCAGCCATCATTCTGCAACGAGCATCCCGCTAATAAAGACAAGGCGCAACCTTCACGGGTTGCGCCTGTa > 1:81029/1‑139 (MQ=255) ggtcTGACGTCGGCAGCCATTATGATGATGTTGCGTATGCGGTTCCTGTAACGTCTGCCGTCAGCCATCATTCTGCAACGAGCATCCCg < 1:225981/86‑1 (MQ=255) ggtcTGACGTCGGCAGCCATTATGATGATGTTGCGTATGCGGTTCCTGTAACGTCTGCCGTCAGCCATCATTCTGCAACGAGCATCCCg > 2:225981/4‑89 (MQ=255) aCGTCGGCAGCCATTATGATGATGTTGCGTATGCGGTTCCTGTAACGTCTGCCGTCAGCCATCATTCTGCAACGAGCAt > 1:566411/1‑79 (MQ=255) aCGTCGGCAGCCATTATGATGATGTTGCGTATGCGGTTCCTGTAACGTCTGCCGTCAGCCATCATTCTGCAACGAGCAt < 2:566411/79‑1 (MQ=255) gatgTTGCGTATGCGGTTCCTGTAACGTCTGCCGTCAGCCATCATTCTGCAACGAGCATCCCg > 2:184428/1‑63 (MQ=255) gatgTTGCGTATGCGGTTCCTGTAACGTCTGCCGTCAGCCATCATTCTGCAACGAGCATCCCg < 1:184428/63‑1 (MQ=255) gTTGCGTATGCGGTTCCTGTAACGTCTGCCGTCAGCCATCATTCTGCAACGAGCATCCCGCTAATAAAGACAAGGCGCAACCTTCACGGGTTGCGCCTGTATTTTTACGCAGGCTGGAGCGTTGCGCCAATCCCGTCtt > 1:689070/1‑139 (MQ=255) gTTGCGTATGCGGTTCCTGTAACGTCTGCCGTCAGCCATCATTCTGCAACGAGCATCCCGCTAATAAAGACAAGGCGCAACCTTCACGGGTTGCGCCTGTATTTTTACGCAGGCTGGAGCGTTGCGCCAATCCCGTCtt > 1:253478/1‑139 (MQ=255) cGTATGCGGTTCCTGTAACGTCTGCCGTCAGCCATCATTCTGCAACGAGCATCCCGCTAATAAAGACAAGGCGCAACCTTCACGGGTTGCGCCTGTATTTTTACGCAGGCTGGAGCGTTGCGCCAATCCCGTCTTCGTc > 1:336803/1‑139 (MQ=255) cGTATGCGGTTCCTGTAACGTCTGCCGTCAGCCATCATTCTGCAACGAGCATCCCGCTAATAAAGACAAGGCGCAACCTTCACGGGTTGCGCCTGTATTTTTACGCAGGCTGGAGCGTTGCGCCAATCCCGTCTTCGTc > 2:778191/1‑139 (MQ=255) tATGCGGTTCCTGTAACGTCTGCCGTCAGCCATCATTCTGCAACGAGCATCCCGCTAATAAAGACAAGGCGCAACCTTCACGGGTTGCGCCTg > 1:789316/1‑93 (MQ=255) tATGCGGTTCCTGTAACGTCTGCCGTCAGCCATCATTCTGCAACGAGCATCCCGCTAATAAAGACAAGGCGCAACCTTCACGGGTTGCGCCTg < 2:789316/93‑1 (MQ=255) tCCTGTAACGTCTGCCGTCAGCCATCATTCTGCAACGAGCATCCCGCTAATAAAGACAAGGCGCAACCTTCACGGGTTGCGCCTGTATTTTTACGCAGGCTGGAGCGTTGCGCCAATCCCGTCTTCGTCTGGCTGTAAt > 2:231053/1‑139 (MQ=255) | CTATATTCTGGCACTGACCGATCTGGTCGTTGAACCTATGGGGCCAGCAGGCTTCTGGATAGGCTTTATTATTGGCCTGACGTCGGCAGCCATTATGATGATGTTGCGTATGCGGTTCCTGCAACGTCTGCCGTCAGCCATCATTCTGCAACGAGCATCCCGCTAATAAAGACAAGGCGCAACCTTCACGGGTTGCGCCTGTATTTTTACGCAGGCTGGAGCGTTGCGCCAATCCCGTCTTCGTCTGGCTGTAAT > NC_000913/1744665‑1744919 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |