| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 194,158 | C→T | S213L (TCG→TTG) | dxr → | 1‑deoxy‑D‑xylulose 5‑phosphate reductoisomerase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 194,158 | 0 | C | T | 100.0% | 82.9 / NA | 27 | S213L (TCG→TTG) | dxr | 1‑deoxy‑D‑xylulose 5‑phosphate reductoisomerase |
| Reads supporting (aligned to +/- strand): ref base C (0/0); new base T (11/16); total (11/16) | |||||||||||
GGGATACGCTGACCTTGAGCAAAATGGCGTGGTGTCCATTTTACTTACCGGGTCTGGTGGCCCTTTCCGTGAGACGCCATTGCGCGATTTGGCAACAATGACGCCGGATCAAGCCTGCCGTCATCCGAACTGGTCGATGGGGCGTAAAATTTCTGTCGATTCGGCTACCATGATGAACAAAGGTCTGGAATACATTGAAGCGCGTTGGCTGTTTAACGCCAGCGCCAGCCAGATGGAAGTGCTGATTCACCCGCAGTCA > NC_000913/194024‑194282 | gggATACGCTGACCTTGAGCAAAATGGCGTGGTGTCCATTTTACTTACCGGGTCTGGTGGCCCTTTCCGTGAGACGCCATTGCGCGATTTGGCAACAATGACGCCGGATCAAGCCTGCCGTCATCCGAACTGGTTGATg < 1:374494/139‑1 (MQ=255) cGCTGACCTTGAGCAAAATGGCGTGGTGTCCATTTTACTTACCGGGTCTGGTGGCCCTTTCCGTGAGACGCCATTGCGCGATTTGGCAACAATGACGCCGGATCAAGCCTGCCGTCATCCGAACTGGTTGATGGGGCGt > 2:70404/1‑139 (MQ=255) gCTGACCTTGAGCAAAATGGCGTGGTGTCCATTTTACTTACCGGGTCTGGTGGCCCTTTCCGTGAGACGCCATTGCGCGATTTGGCAACAATGACGCCGGATCAAGCCTGCCGTCATCCGAACTGGTTGATgggg > 2:778825/1‑135 (MQ=255) gCTGACCTTGAGCAAAATGGCGTGGTGTCCATTTTACTTACCGGGTCTGGTGGCCCTTTCCGTGAGACGCCATTGCGCGATTTGGCAACAATGACGCCGGATCAAGCCTGCCGTCATCCGAACTGGTTGATgggg < 1:778825/135‑1 (MQ=255) gCAAAATGGCGTGGTGTCCATTTTACTTACCGGGTCTGGTGGCCCTTTCCGTGAGACGCCATTGCGCGATTTGGCAACAATGACGCCGGATCAAGCCTGCCGTCATCCGAACTGGTTGATGGGGCGTAAAATTTCTGTc < 2:370345/139‑1 (MQ=255) tacttacCGGGTCTGGTGGCCCTTTCCGTGAGACGCCATTGCGCGATTTGGCAACAATGACGCCGGATCAAGCCTGCCGTCATCCGAACTGGTTGATGGGGCGTAAAATTTCTGTCGATTCGGCTACCATGATGAACaa < 1:70404/139‑1 (MQ=255) tacCGGGTCTGGTGGCCCTTTCCGTGAGACGCCATTGCGCGATTTGGCAACAATGACGCCGGATCAAGCCTGCCGTCATCCGAACTGGTTGATGGGTCGTAAAATTTCTGTCGATTCGGCTACCATGATGAACAAAGGt < 2:526148/139‑1 (MQ=255) tacCGGGTCTGGTGGCCCTTTCCGTGAGACGCCATTGCGCGATTTGGCAACAATGACGCCGGATCAAGCCTGCCGTCATCCGAACTGGTTGATGGGGCGTAAAATTTCTGTCGATTCGGCTACCATGATGAACAAAGGt < 2:802423/139‑1 (MQ=255) tacCGGGTCTGGTGGCCCTTTCCGTGAGACGCCATTGCGCGATTTGGCAACAATGACGCCGGATCAAGCCTGCCGTCATCCGAACTGGTTGATGGGGCGTAAAATTTCTGTCGATTCGGCTACCATGATGAACAAAGGt < 1:10402/139‑1 (MQ=255) tacCGGGTCTGGTGGCCCTTTCCGTGAGACGCCATTGCGCGATTTGGCAACAATGACGCCGGATCAAGCCTGCCGTCATCCGAACTGGTTGATGGGGCGTAAAATTTCTGTCGATTCGGCTACCATGATGAACAAAGGt < 2:155246/139‑1 (MQ=255) ccGGGTCTGGTGGCCCTTTCCGTGAGACGCCATTGCGCGATTTGGCAACAATGACGCCGGATCAAGCCTGCCGTCATCCGAACTGGTTGATGGGGCGTAAAATTTCTGTCGATTCGGCTACCATGATGAACAAAGGTCt > 1:483979/1‑139 (MQ=255) gtggCCCTTTCCGTGAGACGCCATTGCGCGATTTGGCAACAATGACGCCGGATCAAGCCTGCCGTCATCCGAACTGGTTGAt < 2:698054/82‑1 (MQ=255) gtggCCCTTTCCGTGAGACGCCATTGCGCGATTTGGCAACAATGACGCCGGATCAAGCCTGCCGTCATCCGAACTGGTTGAt > 1:698054/1‑82 (MQ=255) ttCCGTGAGACGCCATTGCGCGATTTGGCAACAATGACGCCGGATCAAGCCTGCCGTCATCCGAACTGGTTGATGGGGCGTAAAATTTCTGTCGATTCGGCTACCATGATGAACAAAGGTCTGGAATACATTGAAgcgc > 1:637497/1‑139 (MQ=255) ccGTGAGACGCCATTGCGCGATTTGGCAACAATGACGCCGGATCAAGCCTGCCGTCATCCGAACTGGTTGATGGGGCGTAAAATTTCTGTCGATTCGGCTa > 2:124426/1‑101 (MQ=255) ccGTGAGACGCCATTGCGCGATTTGGCAACAATGACGCCGGATCAAGCCTGCCGTCATCCGAACTGGTTGATGGGGCGTAAAATTTCTGTCGATTCGGCTa < 1:124426/101‑1 (MQ=255) tGAGACGCCATTGCGCGATTTGGCAACAATGACGCCGGATCAAGCCTGCCGTCATCCGAACTGGTTGATGGGGCGTAAAATTTCTGTCGATTCGGCTACCATGATGAACAAAGGTCTGGAATACATTGAAGCGCGTTgg > 1:56018/1‑139 (MQ=255) cGCCATTGCGCGATTTGGCAACAATGACGCCGGATCAAGCCTGCCGTCATCCGAACTGGTTGATGGGGCGTAAAATTTCTGTCGATTCGGCTACCATGATGAACAAAGGTCTGGAATACATTGAAGCGCGTTGGCTGtt > 1:257403/1‑139 (MQ=255) tGCGCGATTTGGCAACAATGACGCCGGATCAAGCCTGCCGTCATCCGAACTGGTTGATGGGGCGTAAAATTTCTGTCGATTCGGCTACCATGATGAACAAAGGTCTGGAATACATTGAAGCGCGTTGGCTGTTTAAcgc < 2:257403/139‑1 (MQ=255) tttGGCAACAATGACGCCGGATCAAGCCTGCCGTCATCCGAACTGGTTGATGGGGCGTAAAATTTCTGTCGATTCGGCTACCATGATGAACAAAGGTCTGGAATACATTGAAGCGCGTTGGCTGTTTAAcgccagcgcc < 2:133539/139‑1 (MQ=255) cGCCGGATCAAGCCTGCCGTCATCCGAACTGGTTGATGGGGCGTAAAATTTCTGTCGATTCGGCTACCATGATGAACAAAGGTCTGGAATACATTGAAGCGCGTTGGCTGTTTAACGCCAGCGCCAGCCAGATGGAAGt > 1:148557/1‑139 (MQ=255) ggATCAAGCCTGCCGTCATCCGAACTGGTTGATGGGGCGTAAAATTTCTGTCGAtt > 2:229815/1‑56 (MQ=255) ggATCAAGCCTGCCGTCATCCGAACTGGTTGATGGGGCGTAAAATTTCTGTCGAtt < 1:229815/56‑1 (MQ=255) aGCCTGCCGTCATCCGAACTGGTTGATGGGGCGTAAAATTTCTGTCGATTCGGCTACCATGATGAACAAAGGTCTGGAATACATTGAAGCGCGTTGGCTGTTTAACGCCAGCGCCAGCCAGATGGAAGTGCTGATTCAc < 2:148557/139‑1 (MQ=255) ccGTCATCCGAACTGGTTGATGGGGCGTAAAATTTCTGTCGATTCGGCTACCATGATGAACa > 2:245009/1‑62 (MQ=255) ccGTCATCCGAACTGGTTGATGGGGCGTAAAATTTCTGTCGATTCGGCTACCATGATGAACa < 1:245009/62‑1 (MQ=255) tCATCCGAACTGGTTGATGGGGCGTAAAATTTCTGTCGATTCGGCTACCATGATGAACAAAGGTCTGGAATACATTGAAGCGCGTTGGCTGTTTAACGCCAGCGCCAGCCAGATGGAAGTGCTGATTCACCCGcagtca < 2:542096/139‑1 (MQ=255) | GGGATACGCTGACCTTGAGCAAAATGGCGTGGTGTCCATTTTACTTACCGGGTCTGGTGGCCCTTTCCGTGAGACGCCATTGCGCGATTTGGCAACAATGACGCCGGATCAAGCCTGCCGTCATCCGAACTGGTCGATGGGGCGTAAAATTTCTGTCGATTCGGCTACCATGATGAACAAAGGTCTGGAATACATTGAAGCGCGTTGGCTGTTTAACGCCAGCGCCAGCCAGATGGAAGTGCTGATTCACCCGCAGTCA > NC_000913/194024‑194282 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |