| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 2,787,434 | G→A | pseudogene (1038/2253 nt) | ygaQ → | uncharacterized protein, putative enzyme |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 2,787,434 | 0 | G | A | 100.0% | 210.9 / NA | 65 | pseudogene (1038/2253 nt) | ygaQ | uncharacterized protein, putative enzyme |
| Reads supporting (aligned to +/- strand): ref base G (0/0); new base A (37/28); total (37/28) | |||||||||||
TCGATATCATTCCTGATTATACCTTTAACTTTATGGGAATTGGGGGTAGTGGTAAAAATGACCTGGATTATCCCTCTGCTGATATACGAGCGAAGATCAGTAAAGATATAGAAGGTGGTAT‑‑CCCTGGCTATTAGCAAGGTCAGGTTTTGATTCCATTCATTAAAGATCCAGTAACAAAAGAACGTAAACAAATCCATCCAGAAGATATACATCTCACTGCAAAAGACTTCGAAGCAAGTAAAGATAACATCTCTAAGGATGAAT > NC_000913/2787301‑2787564 | tCGATATCATTCCTGATTATACCTTTAACTTTATGGGAATTGGGGGTAGTGGTAAAAATGACCTGGATTATCCCTCTGCTGATATACGAGCGAAGATCAGTAAAGATATAGAAGGTGGTAT‑‑CCCTGGCTATTAACAAgg < 2:96299/139‑1 (MQ=255) aTTCCTGATTATACCTTTAACTTTATGGGAATTGGGGGTAGTGGTAAAAATGACCTGGATTATCCCTCTGCTGATATACGAGCGAAGATCAGTAAAGATATAGAAGGTGGTAT‑‑CCCTGGCTATTAACAAGGTCAGGttt < 1:615379/139‑1 (MQ=255) ttATACCTTTAACTTTATGGGAATTGGGGGTAGTGGTAAAAATGACCTGGATTATCCCTCTGCTGATATACGAGCGAAGATCAGTAAAGATATAGAAGGTGGTAT‑‑CCCTGGCTATTAACAAGGTCAGGTTTTGATTCca < 2:419305/139‑1 (MQ=255) taCCTTTAACTTTATGGGAATTGGGGGTAGTGGTAAAAATGACCTGGATTATCCCTCTGCTGATATACGAGCGAAGATCAGTAAAGATATAGAAGGTGGTAT‑‑CCCTGGCTATTAACAAGGTCAGGTTTTGATTCcattc > 2:66261/1‑139 (MQ=255) aCCTTTAACTTTATGGGAATTGGGGGTAGTGGTAAAAATGACCTGGATTATCCCTCTGCTGATATACGAGCGAAGATCAGTAAAGATATAGAAGGTGGTAT‑‑CCCTGGCTATTAACAAGGTCAGGTTTTGATTCcattca > 2:541562/1‑139 (MQ=255) aCCTTTAACTTTATGGGAATTGGGGGTAGTGGTAAAAATGACCTGGATTATCCCTCTGCTGATATACGAGCGAAGATCAGTAAAGATATAGAAGGTGGTAT‑‑CCCTGGCTATTAACAAGGTCAGGTTTTGATTCcattca > 2:449405/1‑139 (MQ=255) cTTTAACTTTATGGGAATTGGGGGTAGTGGTAAAAATGACCTGGATTATCCCTCTGCTGATATACGAGCGAAGATCAGTAAAGATATAGAAGGTGGTAT‑‑CCCTGGCTATTAACAAGGTCAGGTTTTGATTCca > 2:262656/1‑133 (MQ=255) cTTTAACTTTATGGGAATTGGGGGTAGTGGTAAAAATGACCTGGATTATCCCTCTGCTGATATACGAGCGAAGATCAGTAAAGATATAGAAGGTGGTAT‑‑CCCTGGCTATTAACAAGGTCAGGTTTTGATTCca < 1:262656/133‑1 (MQ=255) ttAACTTTATGGGAATTGGGGGTAGTGGTAAAAATGACCTGGATTATCCCTCTGCTGATATACGAGCGAAGATCAGTAAAGATATAGAAGGTGGTAT‑‑CCCTGGCTATTAACAAGGTCAGGTTTTGATTCcatt < 1:134585/133‑1 (MQ=255) ttAACTTTATGGGAATTGGGGGTAGTGGTAAAAATGACCTGGATTATCCCTCTGCTGATATACGAGCGAAGATCAGTAAAGATATAGAAGGTGGTAT‑‑CCCTGGCTATTAACAAGGTCAGGTTTTGATTCcatt > 2:134585/1‑133 (MQ=255) tAACTTTATGGGAATTGGGGGTAGTGGTAAAAATGACCTGGATTATCCCTCTGCTGATATACGAGCGAAGATCAGTAAAGATATAGAAGGTGGTAT‑‑CCCTGGCTATTAACAAGGTCAGGTTTTGATTCCATTCATTaaa > 2:145130/1‑139 (MQ=255) ttATGGGAATTGGGGGTAGTGGTAAAAATGACCTGGATTATCCCTCTGCTGATATACGAGCGAAGATCAGTAAAGATATAGAAGGTGGTAT‑‑CCCTGGCTATTAACAAGGTCAGGTTTTGATTCCATTCATTAAAGATcc < 2:540843/139‑1 (MQ=255) aTGGGAATTGGGGGTAGTGGTAAAAATGACCTGGATTATCCCTCTGCTGATATACGAGCGAAGATCAGTAAAGATATAGAAGGTGGTAT‑‑CCCTGGCTATTAACAAGGTCAGGTTTTGATTCCATTCATTAAAGATCCAg > 1:109122/1‑139 (MQ=255) aTGGGAATTGGGGGTAGTGGTAAAAATGACCTGGATTATCCCTCTGCTGATATACGAGCGAAGATCAGTAAAGATATAGAAGGTGGTAT‑‑CCCTGGCTATTAACAAGGTCAGGTTTTGATTCCATTCATTAAAGATCCAg < 1:449405/139‑1 (MQ=255) ttGGGGGTAGTGGTAAAAATGACCTGGATTATCCCTCTGCTGCTATACGAGCGAAGATCAGTAAAGATATAGAAGGAGGTAT‑‑CCCTGGATATTAACAAGGTCAGGTATTGATTCCATTCATTAAAGATCGAGTAACaaa > 1:468205/1‑139 (MQ=255) ggggTAGTGGTAAAAATGACCTGGATTATCCCTCTGCTGATATACGAGCGAAGATCAGTAAAGATATAGAAGGTGGTATCCCCCTGGCTATTAACAAGGTCAGGTTTTGATTCCATTCATTAAAGATCCAGTAACaaaa > 1:323584/1‑139 (MQ=255) ggTAAAAATGACCTGGATTATCCCTCTGCTGATATACGAGCGAAGATCAGTAAAGATATAGAAGGTGGTAT‑‑CCCTGGCTATTAACAAGGTCAGGTTTTGATTCCATTCATTAAAGATcc > 1:139066/1‑119 (MQ=255) ggTAAAAATGACCTGGATTATCCCTCTGCTGATATACGAGCGAAGATCAGTAAAGATATAGAAGGTGGTAT‑‑CCCTGGCTATTAACAAGGTCAGGTTTTGATTCCATTCATTAAAGATcc < 2:139066/119‑1 (MQ=255) ccTGGATTATCCCTCTGCTGATATACGAGCGAAGATCAGTAAAGATATAGAAGGTGGTAT‑‑CCCTGGCTATTAACAAGGTCAGGTTTTGAtt > 2:641699/1‑91 (MQ=255) ccTGGATTATCCCTCTGCTGATATACGAGCGAAGATCAGTAAAGATATAGAAGGTGGTAT‑‑CCCTGGCTATTAACAAGGTCAGGTTTTGAtt < 1:641699/91‑1 (MQ=255) tGGATTATCCCTCTGCTGATATACGAGCGAAGATCAGTAAAGATATAGAAGGTGGTAT‑‑CCCTGGCTATTAACAAGGTCAGGTTTTGATTCCATTCATTAAAGATCCAGTAACAAAAGAACGTAAACAAATCCATCCaga < 1:684460/139‑1 (MQ=255) gATTATCCCTCTGCTGATATACGAGCGAAGATCAGTAAAGATATAGAAGGTGGTAT‑‑CCCTGGCTATTAACAAGGTCAGGTTTTGATTCCATTCATTAAAGATCCAGTAACAAAAGAACGTAAACAAATCCATCCagaag > 2:210917/1‑139 (MQ=255) ctgctgATATACGAGCGAAGATCAGTAAAGATATAGAAGGTGGTAT‑‑CCCTGGCTATTAACAAGGTCAGGttt < 1:347556/72‑1 (MQ=255) ctgctgATATACGAGCGAAGATCAGTAAAGATATAGAAGGTGGTAT‑‑CCCTGGCTATTAACAAGGTCAGGttt > 2:347556/1‑72 (MQ=255) ctgctgATATACGAGCGAAGATCAGTAAAGATATAGAAGGTGGTAT‑‑CCCTGGCTATTAACAAGGTCAGGTTTTGATTCCATTCATTAAAGATCCAGTAACAAAAGAACGTAAACAAATCCATCCAGAAGATATACAtca > 2:474897/1‑138 (MQ=255) tgctgATATACGAGCGAAGATCAGTAAAGATATAGAAGGTGGTAT‑‑CCCTGGCTATTAACAAGGTCAGGTTTTGATTCCATTCATTAAAGATCCAGTAACaaa < 2:20873/102‑1 (MQ=255) tgctgATATACGAGCGAAGATCAGTAAAGATATAGAAGGTGGTAT‑‑CCCTGGCTATTAACAAGGTCAGGTTTTGATTCCATTCATTAAAGATCCAGTAACaaa > 1:20873/1‑102 (MQ=255) gATATACGAGCGAAGATCAGTAAAGATATAGAAGGTGGTAT‑‑CCCTGGCTATTAACAAGGTCAGGTTTTGATTCCATTCATTAAAGATCCAGTAACAAAAGAACGTAAACAAATCCATCCAGAAGATATACATCTCACTg > 2:165583/1‑139 (MQ=255) aGCGAAGATCAGTAAAGATATAGAAGGTGGTAT‑‑CCCTGGCTATTAACAAGGTCAGGTTTTGATTCCATTCATTAAAGATCCAGTAACAAAAGAACGTAAACAAATCCATCCagaag < 1:722360/116‑1 (MQ=255) aGCGAAGATCAGTAAAGATATAGAAGGTGGTAT‑‑CCCTGGCTATTAACAAGGTCAGGTTTTGATTCCATTCATTAAAGATCCAGTAACAAAAGAACGTAAACAAATCCATCCagaag > 2:722360/1‑116 (MQ=255) aGCGAAGATCAGTAAAGATATAGAAGGTGGTAT‑‑CCCTGGCTATTAACAAGGTCAGGTTTTGATTCCATTCATTAAAGATCCAGTAACAAAAGAACGTAAACAAATCCATCCagaag < 1:176262/116‑1 (MQ=255) aGCGAAGATCAGTAAAGATATAGAAGGTGGTAT‑‑CCCTGGCTATTAACAAGGTCAGGTTTTGATTCCATTCATTAAAGATCCAGTAACAAAAGAACGTAAACAAATCCATCCagaag > 2:176262/1‑116 (MQ=255) aGCGAAGATCAGTAAAGATATAGAAGGTGGTAT‑‑CCCTGGCTATTAACAAGGTCAGGTTTTGATTCCATTCATTAAAGATCCAGTAACAAAAGAACGTAAACAAATCCATCCaga < 2:559561/114‑1 (MQ=255) aGCGAAGATCAGTAAAGATATAGAAGGTGGTAT‑‑CCCTGGCTATTAACAAGGTCAGGTTTTGATTCCATTCATTAAAGATCCAGTAACAAAAGAACGTAAACAAATCCATCCaga > 1:559561/1‑114 (MQ=255) tAAAGATATAGAAGGTGGTATCCCCCTGGCTATTAACAAGGTCAGGTTTTGATTCCATTCATTAAAGATCCAGTAACAAAAGAACGTAAACAAATCCATCCAGAAGATATACATCTCACTGCAAAAGACTTCGAAGCaa < 2:323584/139‑1 (MQ=255) atatAGAAGGTGGTAT‑‑CCCTGGCTATTAACAAGGTCAGGTTTTGATTCCATTCATTAAAGATCCAGTAACAAAAGAACGTAAACAAatccatcc > 1:631673/1‑94 (MQ=255) atatAGAAGGTGGTAT‑‑CCCTGGCTATTAACAAGGTCAGGTTTTGATTCCATTCATTAAAGATCCAGTAACAAAAGAACGTAAACAAatccatcc < 2:631673/94‑1 (MQ=255) ataGAAGGTGGTAT‑‑CCCTGGCTATTAACAAGGTCAGGTTTTGATTCCATTCATTAAAGATCCAGTAACAAAAGAACGTAAACAAATCCATCCAGAAGATATACATCTCACTGCAAAAGACTTCGAAGCAAGTAAAGATa > 2:377236/1‑139 (MQ=255) ataGAAGGTGGTAT‑‑CCCTGGCTATTAACAAGGTCAGGTTTTGATTCCATTCATTAAAGATCCAGTAACAAAAGAACGTAAACAAATCCATCCAGAAGATATACATCTCACTGCAAAAGACTTCGAAGCAAGTAAAGATa > 1:176940/1‑139 (MQ=255) aGAAGGTGGTAT‑‑CCCTGGCTATTAACAAGGTCAGGTTTTGATTCCATTCATTAAAGATCCAGTAACAAAAGAACGTAAACAAATCCATCCAGAAGATATACATCTCACTGCAAAAGACTTCGAAGCAAGTAAAGATAAc < 2:109122/139‑1 (MQ=255) aGAAGGTGGTAT‑‑CCCTGGCTATTAACAAGGTCAGGTTTTGATTCCATTCATTAAAGATCCAGTAACAAAAGAACGTAAACAAATCCATCCAGAAGATATACATCTCACTGCAAAAGACTTCGAAGCAAGTAAAGATAAc < 1:541562/139‑1 (MQ=255) aGAAGGTGGTAT‑‑CCCTGGCTATTAACAAGGTCAGGTTTTGATTCCATTCATTAAAGATCCAGTAACAAAAGAACGTAAACAAATCCATCCAGAAGATATACATCTCACTGCAAAAGACTTCGAAGCAAGTAAAGATAAc < 1:66261/139‑1 (MQ=255) aaGGTGGTAT‑‑CCCTGGCTATTAACAAGGTCAGGTTTTGATTCCATTCATTAAAGATCCAGTAACAAAAGAACGTAAACAAATCCATCCAGAAGATATACATCTCACTGCAAAAGACTTCGAAGCAAGTAAAGATAACAt > 2:567560/1‑139 (MQ=255) ggtggtAT‑‑CCCTGGCTATTAACAAGGTCAGGTTTTGATTCCATTCATTAAAGATCCAGTAACAAAAGAACGTAAACAAATCCATCCAGAAGATATACATCTCACTGCAAAAGACTTCGAAGCAAGTAAAGATAACAtct > 1:253521/1‑139 (MQ=255) gtggtAT‑‑CCCTGGCTATTAACAAGGTCAGGTTTTGATTCCATTCGTTAAAGATCCAGTAACAAAAGAACGTAAACAAATCCATCCAGAAGATATACATCTCACTGCAAAAGACTTCGAAGCAAGTAAAGATAACAtctc > 2:255830/1‑139 (MQ=255) gtggtAT‑‑CCCTGGCTATTAACAAGGTCAGGTTTTGATTCCATTCATTAAAGATCCAGTAACAAAAGAACGTAAACAAATCCATCCaga > 2:434097/1‑88 (MQ=255) gtggtAT‑‑CCCTGGCTATTAACAAGGTCAGGTTTTGATTCCATTCATTAAAGATCCAGTAACAAAAGAACGTAAACAAATCCATCCaga < 1:434097/88‑1 (MQ=255) gtggtAT‑‑CCCTGGCTATTAACAAGGTCAGGTTTTGATTCCATTCATTAAAGATCCAGTAACAAAAGAACGTAAACAAATCCATCCAGAAGATATACATCTCACTGCAAAAGACTTCGAAGCAAGTAAAGATAACAtctc > 2:156259/1‑139 (MQ=255) tggtAT‑‑CCCTGGCTATTAACAAGGTCAGGTTTTGATTCca > 2:491717/1‑40 (MQ=255) tggtAT‑‑CCCTGGCTATTAACAAGGTCAGGTTTTGATTCca < 1:491717/40‑1 (MQ=255) tggtAT‑‑CCCTGGCTATTAACAAGGTCAGGTTTTGATTCCATTCATTAAAGATCCAGTa > 2:158829/1‑58 (MQ=255) tggtAT‑‑CCCTGGCTATTAACAAGGTCAGGTTTTGATTCCATTCATTAAAGATCCAGTa < 1:158829/58‑1 (MQ=255) tggtAT‑‑CCCTGGCTATTAACAAGGTCAGGTTTTGATTCCATTCATTAAAGATCCAGTAACAAAAGAACGTAAACAAATCCATCCAGAAGATATACAtct > 2:222656/1‑99 (MQ=255) tggtAT‑‑CCCTGGCTATTAACAAGGTCAGGTTTTGATTCCATTCATTAAAGATCCAGTAACAAAAGAACGTAAACAAATCCATCCAGAAGATATACAtct < 1:222656/99‑1 (MQ=255) tggtAT‑‑CCCTGGCTATTAACAAGGTCAGGTTTTGATTCCATTCATTAAAGATCCAGTAACAAAAGAACGTAAACAAATCCATCCAGAAGATATACATCTCACTGCAAAAGACTTCGAAGCAAGTAAAGATAAc > 1:213979/1‑133 (MQ=255) tggtAT‑‑CCCTGGCTATTAACAAGGTCAGGTTTTGATTCCATTCATTAAAGATCCAGTAACAAAAGAACGTAAACAAATCCATCCAGAAGATATACATCTCACTGCAAAAGACTTCGAAGCAAGTAAAGATAAc < 2:213979/133‑1 (MQ=255) ggtAT‑‑CCCTGGCTATTAACAAGGTCAGGTTTTGATTCCATTCATTAAAGATCCAGTAACAAAAGAACGTAAACAAATCCATCCAGAAGATATACATCTCACTGCAAAAGACTTCGAAGCAAGTAAAGATAACATCTCTa > 1:152111/1‑139 (MQ=255) gtAT‑‑CCCTGGCTATTAACAAGGTCAGGTTTTGATTCCATTCATTAAAGATCCAGTAACAAAAGAACGTAAACAAATGCATCCAGAAGATATACATCTCa > 1:575757/1‑99 (MQ=255) gtAT‑‑CCCTGGCTATTAACAAGGTCAGGTTTTGATTCCATTCATTAAAGATCCAGTAACAAAAGAACGTAAACAAATCCATCCAGAAGATATACATCTCa < 2:575757/99‑1 (MQ=255) tAT‑‑CCCTGGCTATTAACAAGGTCAGGTTTTGATTCCATTCATTAAAGATCCAGTAACAAAAGAACGTAAACAAATCCATCCAGAAGATATACATCTCACTGCAAAAGACTTCGAAGCAAGTAAAGATAACATCTCTAAg > 2:302850/1‑139 (MQ=255) ggCTATTAACAAGGTCAGGTTTTGATTCCATTCATTAAAGATCCAGTAACAAAAGAACGTAAACAAATCCATCCAGAAGATATACATCTCACTGCAAAAGACTTCGAAGc < 1:533373/110‑1 (MQ=255) ggCTATTAACAAGGTCAGGTTTTGATTCCATTCATTAAAGATCCAGTAACAAAAGAACGTAAACAAATCCATCCAGAAGATATACATCTCACTGCAAAAGACTTCGAAGc > 2:533373/1‑110 (MQ=255) ggCTATTAACAAGGTCAGGTTTTGATTCCATTCATTAAAGATCCAGTAACAAAAGAACGTAAACAAATCCATCCAGAAGATATACATCTCACTGCAAAAGACTTCGAAGCAAGTAAAGATAACATCTCTAAGGATg > 2:536471/1‑136 (MQ=255) ggCTATTAACAAGGTCAGGTTTTGATTCCATTCATTAAAGATCCAGTAACAAAAGAACGTAAACAAATCCATCCAGAAGATATACATCTCACTGCAAAAGACTTCGAAGCAAGTAAAGATAACATCTCTAAGGATg < 1:536471/136‑1 (MQ=255) ggCTATTAACAAGGTCAGGTTTTGATTCCATTCATTAAAGATCCAGTAACAAAAGAACGTAAACAAATCCATCCAGAAGATATACATCTCACTGCAAAAGACTTCGAAGCAAGTAAAGATAACATCTCTAAGGATGAAt > 2:630445/1‑139 (MQ=255) | TCGATATCATTCCTGATTATACCTTTAACTTTATGGGAATTGGGGGTAGTGGTAAAAATGACCTGGATTATCCCTCTGCTGATATACGAGCGAAGATCAGTAAAGATATAGAAGGTGGTAT‑‑CCCTGGCTATTAGCAAGGTCAGGTTTTGATTCCATTCATTAAAGATCCAGTAACAAAAGAACGTAAACAAATCCATCCAGAAGATATACATCTCACTGCAAAAGACTTCGAAGCAAGTAAAGATAACATCTCTAAGGATGAAT > NC_000913/2787301‑2787564 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |