New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 380012	49 (0.710)	13 (0.170) +GGG	9/190	4.4	20.4%	intergenic (‑131/+57)	frmR/yaiO	regulator protein that represses frmRAB operon/outer membrane protein
	?	NC_000913	380013 =	50 (0.650)					intergenic (‑132/+56)	frmR/yaiO	regulator protein that represses frmRAB operon/outer membrane protein
Rejected: Coverage evenness skew score above cutoff.

TCGCACCTCATCATCTGCATGCAATATACTATAGGGGGGTATTCTATATGTCAATGCATACCCCCCTATAGTATATAACACTGGAGAATAAAATTTATCCGGTGAATGTGGTCGGAAAACAAAGAGGAAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/379883‑380012 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GGGGGGGGGGCTAATCGGCAGGGAAGGCCGCCCCGGATAGCGGGCGGCAGAAGGAATCAGAATTTCCAGGTCAGACGGGCTGCAAGTTGCAGACCGTTAAAATCATCGGTTGGGGTGTCGTACCACACTTTACCTGC  >  NC_000913/380013‑380149                                                                                                                                   |||                                                                                                                                          taagagacagTCATCTGCATGCAATATACTATAGGGGGGTATTTTATATGTCAAGTAATAGCCCCCTATAGTATATAACATTGGAGAAAAAAAGTTCTCCGGTAAATGTGGTCGGAAAACAAAGAGGAAAGGGGGGGGG                                                                                                                                     <  1:1104202/129‑1                                     GGGTATTCTATATGTCAATGCATACCCCCCTATAGTATATAACACTGGAGAATAAAATTTATCCGGTGAATGTGGTCGGAAAACAAAGAGGAAA‑GGGGGGGGGGGGCAAATCGGCAGGGAAGGCCGCCCCGGATAGGGG                                                                                                >  2:1490537/1‑139                                                  GTCAATGCATACCCCCCTATAGTATATAACACTGGAGAATAAAATTTATCCGGTGAATGTGGTCGGAAAACAAAGAGGAAAGGGGGGGGGGGcta                                                                                                                                <  1:462426/95‑4                                                  GTCAATGCATACCCCCCTATAGTATATAACACTGGAGAATAAAATTTATCCGGTGAATGTGGTCGGAAAACAAAGAGGAAAGGGGGGGGGGGcta                                                                                                                                >  2:462426/1‑92                                                                                  TGGAGAATAAAATTTATCCGGTGAATGTGGTCGGAAAACAAAGAGGAAA‑GGGGGGGGGGGGCTAATCGGCAGGGAAGGCCGCCCCGGATAGCGGGCGGCAGAAGGAATCAGAATTTCCAGGTCAGACGGGCTGCAAGTT                                                   >  2:475133/1‑139                                                                                  TGGAGAATAAAATTTAACCGGTGAATGTGGTCGGAAAACAAAGAGGAAAGGGGGGGGGGGGG‑TAATTGGTAGGGAAGGCCGCCCCGAAGAGCGGGCGGGAGAAGGAATAAGAATTTCCAGGTCAGACGGGCAGCAAGTT                                                   >  2:231578/1‑139                                                                                         TAAAATTTATCCGGTGAATGTGGTCGGAAAACAAAGAGGAAAGGGGGGGGGGGGGCTAATCGGCAGGGAAGGCCGCCCCGGATAGCGGGCGGCAGAAGGAATCAGAATTTCCAGGTCAGACGGGCTGCAAGTTGCAGA                                              >  2:58723/1‑138                                                                                         TAAAATTTATCCGGTGAATGTGGTCGGAAAACAAAGAGGAAAGGGGGGGGGGGGGCTAATCGGCAGGGAAGGCCGCCCCGGATAGCGGGCGGCAGAAGGAATCAGAATTTCCAGGTCAGACGGGCTGCAAGTTGCAGA                                              <  1:58723/138‑1                                                                                                    CGGTGAATGTGGTCGGAAAACAAAGAGGAAA‑GGGGGGGGGGGGCTAATCGGCAGGGAAGGCCGCCCCGGATAGCGGGCGGCAGAAGGAATCAGAATTTCCAGGTCAGACGGGCTGCAAGTTGCAGACCGTTAAAATCAT                                 <  1:475133/139‑1                                                                                                       TGAATGTGGTCGGAAAACAAAGAGGAAAGGGGGGGGGGGGGCAAATAGGCAGGGAAGGCCGCCCCGGAGAGCGGGCGGCAGAAGGAATCAGAATTTCCAGGTCAGCCGGGCGGCAAGTTGCAGACCTTTAAAATCATCG                               >  2:1611283/1‑139                                                                                                       TGAATGTGGTCGGAAAACAAAGAGGAAA‑GGGGGGGGGGGGCTAATCGGCAGGGAAGG                                                                                                                <  1:253436/57‑1                                                                                                       TGAATGTGGTCGGAAAACAAAGAGGAAA‑GGGGGGGGGGGGCTAATCGGCAGGGAAGG                                                                                                                >  2:253436/1‑57                                                                                                                    AAAACAATGGGGAAA‑GGGGGGGGCGGGCTAAACGGCAGGGAAGGCCGCCCCGGATAGCGGCAGGCAGAAGGAATCAGAATTTCCAGGTCAGACGGGCTGCAAGATGCAGACCGTTAAAATCATCGGTTGGGGTGTCGTA                 <  1:231578/139‑1                                                                                                                                    aGGGGGGGGGGGCTAATCGGCAGGGAAGGCCGCCCCGGATAGCGGGCGGCAGAAGGAATCAGAATTTCCAGGTCAGACGGGCTGCAAGTTGCAGACCGTTAAAATCATCGGTTGGGGTGTCGTACCACACTTTACCTGC  >  1:1544714/2‑139                                                                                                                                    aGGGGGGGGGGGCTAATCGGCAGGGAAGGCCGCCCCGGATAGCGGGCGGCAGAA                                                                                       >  2:1128175/2‑54                                                                                                                                    aGGGGGGGGGGGCTAATCGGCAGGGAAGGCCGCCCCGGATAGCGGGCGGCAGAA                                                                                       <  1:1128175/53‑1                                                                                                                                     GGGGGGGGGGGCTAATCGGCAGGGAAGGCCGCCCCGGATAGCGGGCGGCAGAAGGAATCAGAATTTCCAGGTCAGACGGGCTGCAAGTTGCAGACCGTTAAAATCATCGGTTGGG                         <  2:229855/115‑1                                                                                                                                     GGGGGGGGGGGCTAATCGGCAGGGAAGGCCGCCCCGGATAGCGGGCGGCAGAAGGAATCAGAATTTCCAGGTCAGACGGGCTGCAAGTTGCAGACCGTTAAAATCATCGGTTGGG                         >  1:229855/1‑115                                                                                                                                   |||                                                                                                                                          TCGCACCTCATCATCTGCATGCAATATACTATAGGGGGGTATTCTATATGTCAATGCATACCCCCCTATAGTATATAACACTGGAGAATAAAATTTATCCGGTGAATGTGGTCGGAAAACAAAGAGGAAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/379883‑380012 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GGGGGGGGGGCTAATCGGCAGGGAAGGCCGCCCCGGATAGCGGGCGGCAGAAGGAATCAGAATTTCCAGGTCAGACGGGCTGCAAGTTGCAGACCGTTAAAATCATCGGTTGGGGTGTCGTACCACACTTTACCTGC  >  NC_000913/380013‑380149

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.