Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	1,200,881	G→A	A51V (GCC→GTC)	xisE ←	e14 prophage, putative excisionase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,200,881	0	G	A	100.0%	290.4 / NA	89	A51V (GCC→GTC)	xisE	e14 prophage, putative excisionase
Reads supporting (aligned to +/- strand):  ref base G (0/0);  new base A (51/38);  total (51/38)

AAGCGGATATAAGTTAGGGACTGAAACATTATTCTTACGCGGTCTGGCTGCCATTACTCAAAATCCGTTGCAAAAGTAATGAGTCATTTTTCTTGATTACAGGTGTTACCAACTCCCCAACTAACTCGGCGTCCTCACGCACTC‑GCCATAACCGGCCTTGTTTCATGGCCGGTGGACAAAATAAATTCTGCTTAGCATAACGACGCAATGTGGACACACTTGGAGGATTACTTCTGTATTTTTCAGCAGCCCATTCTTCAAG  >  NC_000913/1200753‑1201014                                                                                                                                 |                                                                                                                                       aaGCGGATATAAGTTAGGGACTGAAACATTATTCTTACGCGGTCTGGCTGCCATTACTCAAAATCCGTTGCAAAAGTAATGAGTCATTTTTCTTGATTACAGGTGTTACCAACTCCCCAACTAACTCGACGTCCTCACg                                                                                                                              >  1:1739135/1‑139 (MQ=255)  aGCGGATATAAGTTAGGGACTGAAACATTATTCTTACGCGGTCTGGCTGCCATTACTCAAAATCCGTTGCAAAAGTAATGAGTCATTTTTCTTGATTACAGGTGTTACCAACTCCCCAACTAACTCGACGTCCTCACGc                                                                                                                             >  1:57707/1‑139 (MQ=255)   gCGGATATAAGTTAGGGACTGAAACATTATTCTTACGCGGTCTGGCTGCCATTACTCAAAATCCGTTGCAAAAGTAATGAGTCATTTTTCTTGATTACAGGTGTTACCAACTCCCCAACTAACTCGACGTCCTCACGCa                                                                                                                            <  2:773133/139‑1 (MQ=255)   gCGGATATAAGTTAGGGACTGAAACATTATTCTTACGCGGTCTGGCTGCCATTACTCAAAATCCGTTGCAAAAGTAATGAGTCATTTTTCTTGATTACAGGTGTTACCAACTCCCCAACTAACTCGACGTCCTCACGCa                                                                                                                            <  2:431306/139‑1 (MQ=255)      gATATAAGTTAGGGACTGAAACATTATTCTTACGCGGTCTGGCTGCCATTACTCAAAATCCGTTGCAAAAGTAATGAGTCATTTTTCTTGATTACAGGTGTTACCAACTCCCCAACTAACTCGACGTCCTCa                                                                                                                                >  2:1756592/1‑132 (MQ=255)      gATATAAGTTAGGGACTGAAACATTATTCTTACGCGGTCTGGCTGCCATTACTCAAAATCCGTTGCAAAAGTAATGAGTCATTTTTCTTGATTACAGGTGTTACCAACTCCCCAACTAACTCGACGTCCTCa                                                                                                                                <  1:1756592/132‑1 (MQ=255)       atatAAGTTAGGGACTGAAACATTATTCTTACGCGGTCTGGCTGCCATTACTCAAAATCCGTTGCAAAAGTAATGAGTCATTTTTCTTGATTACAGGTGTTACCAACTCCCCAACTAACTCGACGTCCTCACGCa                                                                                                                            <  1:831505/135‑1 (MQ=255)       atatAAGTTAGGGACTGAAACATTATTCTTACGCGGTCTGGCTGCCATTACTCAAAATCCGTTGCAAAAGTAATGAGTCATTTTTCTTGATTACAGGTGTTACCAACTCCCCAACTAACTCGACGTCCTCACGCa                                                                                                                            >  2:831505/1‑135 (MQ=255)       atatAAGTTAGGGACTGAAACATTATTCTTACGCGGTCTGGCTGCCATTACTCAAAATCCGTTGCAAAAGTAATGAGTCATTTTTCTTGATTACAGGTGTTACCAACTCCCCAACTAACTCGACGTCCTCACGCACTC‑g                                                                                                                       >  2:277442/1‑139 (MQ=255)       atatAAGTTAGGGACTGAAACATTATTCTTACGCGGTCTGGCTGCCATTACTCAAAATCCGTTGCAAAAGTAATGAGTCATTTTTCTTGATTACAGGTGTTACCAACTCCCCAACTAACTCGACGTCCTCACGCACTC‑g                                                                                                                       >  1:1628339/1‑139 (MQ=255)                aGGGACTGAAACATTATTCTTACGCGGTCTGGCTGCCATTACTCAAAATCCGTTGCAAAAGTAATGAGTCATTTTTCTTGATTACAGGTGTTACCAACTCCCCAACTAACTCGACGTCCTCACGCACTC‑GCCATAACCg                                                                                                              >  2:1798944/1‑139 (MQ=255)                 gggACTGAAACATTATTCTTACGCGGTCTGGCTGCCATTACTCAAAATCCGTTGCAAAAGTAATGAGTCATTTTTCTTGATTACAGGTGTTACCAACTCCCCAACTAACTCGACGTCCTCACGCACTC‑GCCATAACCgg                                                                                                             >  1:687250/1‑139 (MQ=255)                 gggACTGAAACATTATTCTTACGCGGTCTGGCTGCCATTACTCAAAATCCGTTGCAAAAGTAATGAGTCATTTTTCTTGATTACAGGTGTTACCAACTCCCCAACTAACTCGACGTCCTCACGCACTC‑GCCATAACCgg                                                                                                             >  2:179131/1‑139 (MQ=255)                 gggACTGAAACATTATTCTTACGCGGTCTGGCTGCCATTACTCAAAATCCGTTGCAAAAGTAATGAGTCATTTTTCTTGATTACAGGTGTTACCAACTCCCCAACTAACTCGACGTCCTCACGCACTC‑GCCATAACCgg                                                                                                             <  1:277442/139‑1 (MQ=255)                 gggACTGAAACATTATTCTTACGCGGTCTGGCTGCCATTACTCAAAATCCGTTGCAAAAGTAATGAGTCATTTTTCTTGATTACAGGTGTTACCAACTCCCCAACTAACTCGACGTCCTCACGCACTC‑GCCATAACCgg                                                                                                             >  2:1634016/1‑139 (MQ=255)                        aaaCATTATTCTTACGCGGTCTGGCTGCCATTACTCAAAATCCGTTGCAAAAGTAATGAGTCATTTTTCTTGATTACAGGTGTTACCAACTCCCCAACTAACTCGACGTCCTCACGCACTC‑GCCATAACCGGCCTTGtt                                                                                                      >  1:1313309/1‑139 (MQ=255)                        aaaCATTATTCTTACGCGGTCTGGCTGCCATTACTCAAAATCCGTTGCAAAAGTAATGAGTCATTTTTCTTGATTACAGGTGTTACCAACTCCCCAACTAACTCGACGTCCTCACGCACTC‑GCCATAACCGGCCTTGtt                                                                                                      >  1:957283/1‑139 (MQ=255)                            attattCTTACGCGGTCTGGCTGCCATTACTCAAAATCCGTTGCAAAAGTAATGAGTCATTTTTCTTGATTACAGGTGTTACCAACTCCCCAACTAACTCGACGTCCTCACGCACTC‑GCCATAACCGGCCTTGTTTCAt                                                                                                  <  2:1628339/139‑1 (MQ=255)                                     aCGCGGTCTGGCTGCCATTACTCAAAATCCGTTGCAAAAGTAATGAGTCATTTTTCTTGATTACAGGTGTTACCAACTCCCCAACTAACTCGACGTCCTCACGCACTC‑GCCATAACCGGCCTTGTTTCATGGCCGGTgg                                                                                         >  2:538886/1‑139 (MQ=255)                                     aCGCGGTCTGGCTGCCATTACTCAAAATCCGTTGCAAAAGTAATGAGTCATTTTTCTTGATTACAGGTGTTACCAACTCCCCAACTAACTCGACGTCCTCACGCACTC‑GCCATAACCGGCCTTGTTTCATGGCCGGTgg                                                                                         >  1:552387/1‑139 (MQ=255)                                      cgcgGTCTGGCTGCCATTACTCAAAATCCGTTGCAAAAGTAATGAGTCATTTTTCTTGATTACAGGTGTTACCAACTCCCCAACTAACTCGACGTCCTCACGCACTC‑GCCATAACCGGCCTTGTTTCATGGCCGGTGGa                                                                                        >  2:51628/1‑139 (MQ=255)                                       gcgGTCTGGCTGCCATTACTCAAAATCCGTTGCAAAAGTAATGAGTCATTTTTCTTGATTACAGGTGTTACCAACTCCCCAACTAACTCGACGTCCTCACGCACTC‑GCCATAACCGGCCTTGTTTCATGGCCGGTGGAc                                                                                       <  1:1634016/139‑1 (MQ=255)                                       gcgGTCTGGCTGCCATTACTCAAAATCCGTTGCAAAAGTAATGAGTCATTTTTCTTGATTACAGGTGTTACCAACTCCCCAACTAACTCGACGTCCTCACGCACTC‑GCCATAACCGGCCTTGTTTCATGGCCGGTGGAc                                                                                       <  1:179131/139‑1 (MQ=255)                                       gcgGTCTGGCTGCCATTACTCAAAATCCGTTGCAAAAGTAATGAGTCATTTTTCTTGATTACAGGTGTTACCAACTCCCCAACTAACTCGACGTCCTCACGCACTC‑GCCATAACCGGCCTTGTTTCATGGCCGGTGGAc                                                                                       <  2:552387/139‑1 (MQ=255)                                          gTCTGGCTGCCATTACTCAAAATCCGTTGCAAAAGTAATGAGTCATTTTTCTTGATTACAGGTGTTACCAACTCCCCAACTAACTCGACGTCCTCACGCACTC‑GCCATAACCGGCCTTGTTTCATGGCCGGTGGACaaa                                                                                    >  2:890921/1‑139 (MQ=255)                                          gTCTGGCTGCCATTACCCAAAATCCGTTGCAAAAGTAATGAGTCATTTTTCTTGATTACAGGTGTTACCAACTCCCCAACTAACTCGACGTCCTCACGCACTC‑GCCATAACCGGCCTTGTTTCATGGCCGGTGGACaaa                                                                                    >  2:334265/1‑139 (MQ=255)                                           tCTGGCTGCCATTACTCAAAATCCGTTGCAAAAGTAATGAGTCATTTTTCTTGATTACAGGTGTTACCAACTCCCCAACTAACTCGACGTCCTCACGCACTC‑GCCATAACCGGCCTTGTTTCATGGCCGGTGGACaaaa                                                                                   >  2:1354210/1‑139 (MQ=255)                                                 tGCCATTACTCAAAATCCGTTGCAAAAGTAATGAGTCATTTTTCTTGATTACAGGTGTTACCAACTCCCCAACTAACTCGACGTCCTCACGCACTC‑GCCATAACCGGCCTTGTTTCATGGCCGGTGGACAAAATAAAtt                                                                             <  1:1798944/139‑1 (MQ=255)                                                   ccATTACTCAAAATCCGTTGCAAAAGTAATGAGTCATTTTTCTTGATTACAGGTGTTACCAACTCCCCAACTAACTCGACGTCCTCACGCACTC‑GCCATAAc                                                                                                                <  2:501041/102‑1 (MQ=255)                                                   ccATTACTCAAAATCCGTTGCAAAAGTAATGAGTCATTTTTCTTGATTACAGGTGTTACCAACTCCCCAACTAACTCGACGTCCTCACGCACTC‑GCCATAAc                                                                                                                >  1:501041/1‑102 (MQ=255)                                                    cATTACTCAAAATCCGTTGCAAAAGTAATGAGTCATTTTTCTTGATTACAGGTGTTACCAACTCCCCAACTAACTCGACGTCCTCACGCACTC‑GCCATAACCGGCCTTGTTTCATGGCCGGTGGACAAAATAAATTCTg                                                                          <  2:1739135/139‑1 (MQ=255)                                                     aTTACTCAAAATCCGTTGCAAAAGTAATGAGTCATTTTTCTTGATTACAGGTGTTACCAACTCCCCAACTAACTCGACGTCCTCACGCACTC‑GCCATAACCGGCCTTGTTTCATGGCCGGTGGACAAAATAAATTCTGc                                                                         >  1:862496/1‑139 (MQ=255)                                                     aTTACTCAAAATCCGTTGCAAAAGTAATGAGTCATTTTTCTTGATTACAGGTGTTACCAACTCCCCAACTAACTCGACGTCCTCACGCACTC‑GCCATAACCGGCCTTGTTTCATGGCCGGTGGACAAAATAAATTCTGc                                                                         >  2:369437/1‑139 (MQ=255)                                                     aTTACTCAAAATCCGTTGCAAAAGTAACGAGTCATTTTTCTTGATTACAGGTGTTACCAACTCCCCAACTAACTCGACGTCCTCACGCACTC‑GCCATAACCGGCCTTGTTTCATGGCCGGTGGACAAAATAAATTCTGc                                                                         >  2:1390954/1‑139 (MQ=255)                                                      ttACTCAAAATCCGTTGCAAAAGTAATGAGTCATTTTTCTTGATTACAGGTGTTACCAACTCCCCAACTAACTCGACGTCCTCACGCACTC‑GCCATAACCGGCCTTGTTTCATGGCCGGTGGACAAAATAAATTCTGCt                                                                        <  2:337413/139‑1 (MQ=255)                                                      ttACTCAAAATCCGTTGCAAAAGTAATGAGTCATTTTTCTTGATTACAGGTGTTACCAACTCCCCAACTAACTCGACGTCCTCACGCACTC‑GCCATAACCGGCCTTGTTTCATGGCCGGTGGACAAAATAAATTCTGCt                                                                        <  1:51628/139‑1 (MQ=255)                                                      ttACTCAAAATCCGTTGCAAAAGTAATGAGTCATTTTTCTTGATTACAGGTGTTACCAACTCCCCAACTAACTCGACGTCCTCACGCACTC‑GCCATAACCGGCCTTGTTTCATGGCCGGTGGACAAAATAAATTCTGCt                                                                        <  2:1313309/139‑1 (MQ=255)                                                         cTCAAAATCCGTTGCAAAAGTAATGAGTCATTTTTCTTGATTACAGGTGTTACTAACTCCCCAACTAACTCGACGTCCTCACGCACTC‑GCCATAAc                                                                                                                >  2:925049/1‑96 (MQ=255)                                                         cTCAAAATCCGTTGCAAAAGTAATGAGTCATTTTTCTTGATTACAGGTGTTACCAACTCCCCAACTAACTCGACGTCCTCACGCACTC‑GCCATAAc                                                                                                                <  1:925049/96‑1 (MQ=255)                                                                 ccGTTGCAAAAGTAATGAGTCATTTTTCTTGATTACAGGTGTTACCAACTCCCCAACTAACTCGACGTCCTCACGCACTC‑GCCATAACCGGCCTTGTTTCATGGCCGGTGGACAAAATAAATTCTGCTTAGCATAacga                                                             <  2:351517/139‑1 (MQ=255)                                                                   gTTGCAAAAGTAATGAGTCATTTTTCTTGATTACAGGTGTTACCAACTCCCCAACTAACTCGACGTCCTCACGCACTC‑GCCATAACCGGCCTTGTTTCATGGCCGGTGGACAaaat                                                                                  <  1:614332/116‑1 (MQ=255)                                                                   gTTGCAAAAGTAATGAGTCATTTTTCTTGATTACAGGTGTTACCAACTCCCCAACTAACTCGACGTCCTCACGCACTC‑GCCATAACCGGCCTTGTTTCATGGCCGGTGGACAaaat                                                                                  >  2:614332/1‑116 (MQ=255)                                                                   gTTGCAAAAGTAATGAGTCATTTTTCTTGATTACAGGTGTTACCAACTCCCCAACTAACTCGACGTCCTCACGCACTC‑GCCATAACCGGCCTTGTTTCATGGCCGGTGGACAAAATAAAtt                                                                             <  1:844215/121‑1 (MQ=255)                                                                   gTTGCAAAAGTAATGAGTCATTTTTCTTGATTACAGGTGTTACCAACTCCCCAACTAACTCGACGTCCTCACGCACTC‑GCCATAACCGGCCTTGTTTCATGGCCGGTGGACAAAATAAAtt                                                                             >  2:844215/1‑121 (MQ=255)                                                                    ttGCAAAAGTAATGAGTCATTTTTCTTGATTACAGGTGTTACCAACTCCCCAACTAACTCGACGTCCTCACGCACTC‑GCCATAACCGGCCTTGTTTCATGGCCGGTGGACAAAATAAATTCTGCTTAGCATAACGACGc                                                          >  2:1350560/1‑139 (MQ=255)                                                                    ttGCAAAAGTAATGAGTCATTTTTCTTGATTACAGGTGTTACCAACTCCCCAACTAACTCGACGTCCTCACGCACTC‑GCCATAACCGGCCTTGTTTCATGGCCGGTGGACAAAATAAATTCTGCTTAGCATAACGACGc                                                          <  1:890921/139‑1 (MQ=255)                                                                               aTGAGTCATTTTTCTTGATTACAGGTGTTACCAACTCCCCAACTAACTCGACGTCCTCACGCACTC‑GCCATAACCGGCCTTGTTTCATGGCCGGTGGAc                                                                                       <  2:1170733/99‑1 (MQ=255)                                                                               aTGAGTCATTTTTCTTGATTACAGGTGTTACCAACTCCCCAACTAACTCGACGTCCTCACGCACTC‑GCCATAACCGGCCTTGTTTCATGGCCGGTGGAc                                                                                       >  1:1170733/1‑99 (MQ=255)                                                                               aTGAGTCATTTTTCTTGATTACAGGTGTTACCAACTCCCCAACTAACTCGACGTCCTCACGCACTC‑GCCATAACCGGCCTTGTTTCATGGCCGGTGGACAAAATAAATTCTGCTTAGCATAACGACGCAATGTGGacac                                               >  2:970321/1‑139 (MQ=255)                                                                                       tttttCTTGATTACAGGTGTTACCAACTCCCCAACTAACTCGACGTCCTCACGCa                                                                                                                            <  2:1395807/55‑1 (MQ=255)                                                                                       tttttCTTGATTACAGGTGTTACCAACTCCCCAACTAACTCGACGTCCTCACGCa                                                                                                                            >  1:1395807/1‑55 (MQ=255)                                                                                       tttttCTTGATTACAGGTGTTACCAACTCCCCAACTAACTCGACGTCCTCACGCACTC‑GCCATAACCGGCCTTGTTTCATGGCCg                                                                                             <  2:1316617/85‑1 (MQ=255)                                                                                       tttttCTTGATTACAGGTGTTACCAACTCCCCAACTAACTCGACGTCCTCACGCACTC‑GCCATAACCGGCCTTGTTTCATGGCCg                                                                                             >  1:1316617/1‑85 (MQ=255)                                                                                       tttttCTTGATTACAGGTGTTACCAACTCCCCAACTAACTCGACGTCCTCACGCACTC‑GCCATAACCGGCCTTGTTTCATGGCCGGTGGACAAAATAAATTCTGCTTAGCATAACGACGCAATGTGGACACACTTggag                                       >  2:96343/1‑139 (MQ=255)                                                                                          ttCTTGATTACAGGTGTTACCAACTCCCCAACTAACTCGACGTCCTCACGCACTC‑GCCATAACCGGCCTTGTTTCATGGCCGGTGGACAAAATAAATTCTGCTTAGCATAACGACGCAATGTGGACACACTTGGAGGAt                                    <  1:1350560/139‑1 (MQ=255)                                                                                          ttCTTGATTACAGGTGTTACCAACTCCCCAACTAACTCGACGTCCTCACGCACTC‑GCCATAACCGGCCTTGTTTCATGGCCGGTGGACAAAATAAATTCTGCTTAGCATAACGACGCAATGTGGACACACTTGGAGGAt                                    <  1:1390954/139‑1 (MQ=255)                                                                                              tGATTACAGGTGTTACCAACTCCCCAACTAACTCGACGTCCTCACGCACTC‑GCCATAACCGGcc                                                                                                           <  2:819265/64‑1 (MQ=255)                                                                                              tGATTACAGGTGTTACCAACTCCCCAACTAACTCGACGTCCTCACGCACTC‑GCCATAACCGGcc                                                                                                           >  1:819265/1‑64 (MQ=255)                                                                                               gATTACAGGTGTTACCAACTCCCCAACTAACTCGACGTCCTCACGCACTC‑GCCATAACCGGCCTTGTTTCATGGCCGGTGGACAAAATAAATTCTGCTTAGCATAACGACGCAATGTGGACACACTTgg                                         >  2:238570/1‑129 (MQ=255)                                                                                               gATTACAGGTGTTACCAACTCCCCAACTAACTCGACGTCCTCACGCACTC‑GCCATAACCGGCCTTGTTTCATGGCCGGTGGACAAAATAAATTCTGCTTAGCATAACGACGCAATGTGGACACACTTgg                                         <  1:238570/129‑1 (MQ=255)                                                                                                  tACAGGTGTTACCAACTCCCCAACTAACTCGACGTCCTCACGCACTC‑GCCATAACCGGCCTTGTTTCATGGCCGGTGGACAAAATAAATTCTGCTTAGCATAACGACGCAATGTGGACACACTTGGAGGATTACTTCTg                            <  1:334265/139‑1 (MQ=255)                                                                                                  tACAGGTGTTACCAACTCCCCAACTAACTCGACGTCCTCACGCACTC‑GCCATAACCGGCCTTGTTTCATGGCCGGTGGACAAAATAAATTCTGCTTAGCATAACGACGCAATGTGGACACACTTGGAGGATTACTTCTg                            >  1:1654496/1‑139 (MQ=255)                                                                                                          ttACCAACTCCCCAACTAACTCGACGTGCTCACGCACTC‑GCCATAACCGGCCTTGTTTCATGGCCGGTGGAc                                                                                       <  1:1270159/72‑1 (MQ=255)                                                                                                          ttACCAACTCCCCAACTAACTCGACGTCCTCACGCACTC‑GCCATAACCGGCCTTGTTTCATGGCCGGTGGACAAAATAAATTCTGCTTAGCATAACGACGCAATGTGGaca                                                <  2:403959/111‑1 (MQ=255)                                                                                                          ttACCAACTCCCCAACTAACTCGACGTCCTCACGCACTC‑GCCATAACCGGCCTTGTTTCATGGCCGGTGGACAAAATAAATTCTGCTTAGCATAACGACGCAATGTGGaca                                                >  1:403959/1‑111 (MQ=255)                                                                                                          ttACCAACTCCCCAACTAACTCGACGTCCTCACGCACTC‑GCCATAACCGGCCTTGCTTCATGGCCGGTGGAc                                                                                       >  2:1270159/1‑72 (MQ=255)                                                                                                            aCCAACTCCCCAACTAACTCGACGTCCTCACGTACTC‑GCCATAACCGGCCTTGTTTCATGGCCGGTGGACAAAATAAATTCTGCTTAGCATAACGACGCAATGTGGACACACTTGGAGGATTACTTCTGTATTTTTcag                  >  1:1066165/1‑139 (MQ=255)                                                                                                            aCCAACTCCCCAACTAACTCGACGTCCTCACGCACTC‑GCCATAACCGGCCTTGTTTCATGGCCGGTGGACAAAATAAATTCTGCTTAGCATAACGACGCAATGTGGaca                                                <  2:607698/109‑1 (MQ=255)                                                                                                            aCCAACTCCCCAACTAACTCGACGTCCTCACGCACTC‑GCCATAACCGGCCTTGTTTCATGGCCGGTGGACAAAATAAATTCTGCTTAGCATAACGACGCAATGTGGaca                                                >  1:607698/1‑109 (MQ=255)                                                                                                            aCCAACTCCCCAACTAACTCGACGTCCTCACGCACTC‑GCCATAACCGGCCTTGTTTCATGGCCGGTGGACAAAATAAATTCTGCTTAGCATAACGACGCAATGTGGACACACTTGGAGGATTACTTCTGTATTTTTcag                  >  2:1401954/1‑139 (MQ=255)                                                                                                            aCCAACTCCCCAACTAACTCGACGTCCTCACGCACTC‑GCCATAACCGGCCTTGTTTCATGGCCGGTGGACAAAATAAATTCTGCTTAGCATAACGACGCAATGTGGACACACTTGGAGGATTACTTCTGTATTTTTcag                  >  2:1482189/1‑139 (MQ=255)                                                                                                               aaCTCCCCAACTAACTCGACGTCCTCACGCACTC‑GCCATAACCGGCCTTGTTTCATGGCCGGTGGACAAAATAAATTCTGCTTAGCATAACGACGCAATGTGGACACACTTGGAGGATTACTTCTGTATTTTTcagcag               >  1:670758/1‑139 (MQ=255)                                                                                                                 cTCCCCAACTAACTCGACGTCCTCACGCACTC‑GCCATAACCGGCCTTGTTTCATGGCCGGTGGACAAAATAAATTCTGCTTAGCATAACGACGCAATGTGGa                                                  <  2:248760/102‑1 (MQ=255)                                                                                                                 cTCCCCAACTAACTCGACGTCCTCACGCACTC‑GCCATAACCGGCCTTGTTTCATGGCCGGTGGACAAAATAAATTCTGCTTAGCATAACGACGCAATGTGGa                                                  >  1:248760/1‑102 (MQ=255)                                                                                                                 cTCCCCAACTAACTCGACGTCCTCACGCACTC‑GCCATAACCGGCCTTGTTTCATGGCCGGTGGACAAAATAAATTCTGCTTAGCATAACGACGCAATGTGGACACACTTGGAGGATTACTTCTGTATTTTTCAGCAGcc             >  1:1643459/1‑139 (MQ=255)                                                                                                                   ccccAACTAACTCGACGTCCTCACGCACTC‑GCCATAACCGGCCTTGTTTCATGGCCGGTGGACAAAATAAATTCTGCTTAGCATAACGACGCAATGTGGACACACTTGGAGGATTACTTCTGTATTTTTCAGCAGCCCa           <  1:369437/139‑1 (MQ=255)                                                                                                                    cccAACTAACTCGACGTCCTCACGCACTC‑GCCATAACCGGCCTTGTTTCATGGCCGGTGGACAAAATAAATTCTGCTTAGCATAACGACGCAATGTGGACACACTTGGAGGATTACTTCTGTATTTTTCAGCAGCCCAt          >  2:1756571/1‑139 (MQ=255)                                                                                                                    cccAACTAACTCGACGTCCTCACGCACTC‑GCCATAACCGGCCTTGTTTCATGGCCGGTGGACAAAATAAATTCTGCTTAGCATAACGACGCAATGTGGACACACTTGGAGGATTACTTCTGTATTTTTCAGCAGCCCAt          >  1:1217174/1‑139 (MQ=255)                                                                                                                      cAACTAACTCGACGTCCTCACGCACTC‑GCCATAACCGGCCTTGTTTCATGGCCGGTGGACAAAATAAATTCTGCTTAGCATAACGACGCAATGTGGaca                                                >  1:123231/1‑99 (MQ=255)                                                                                                                      cAACTAACTCGACGTCCTCACGCACTC‑GCCATAACCGGCCTTGTTTCATGGCCGGTGGACAAAATAAATTCTGCTTAGCATAACGACGCAATGTGGaca                                                <  2:123231/99‑1 (MQ=255)                                                                                                                        actaactCTACGTCCTCACGCACTC‑GCCATAACCGGCCTTGTTTCATGGCCGGTGGACAAAATAAATTCTGCTTAGTATAACGACGCAATGTGGACACACTTGGAGGATTACTTCTGTATTTTTCAGCAGCCCAttctt      <  2:1066165/139‑1 (MQ=255)                                                                                                                            actCGACGTCCTCACGCACTCGGCCATAACCGGCCTTGTTTCATGGCCGGTGGACAAAATAAATTCTGCTTAGCATAACGACGCAATGTGGac                                                 <  2:1227604/93‑1 (MQ=255)                                                                                                                            actCGACGTCCTCACGCACTCGGCCATAACCGGCCTTGTTTCATGGCCGGTGGACAAAATAAATTCTGCTTAGCATAACGACGCAATGTGGac                                                 >  1:1227604/1‑93 (MQ=255)                                                                                                                            actCGACGTCCTCACGCACTC‑GCCATAACCGGCCTTGTTTCATGGCCGGTgg                                                                                         <  1:205404/52‑1 (MQ=255)                                                                                                                            actCGACGTCCTCACGCACTC‑GCCATAACCGGCCTTGTTTCATGGCCGGTgg                                                                                         >  2:205404/1‑52 (MQ=255)                                                                                                                            actCGACGTCCTCACGCACTC‑GCCATAACCGGCCTTGTTTCATGGCCGGTGGACAAAATAAATTCTGCTTAGCa                                                                   >  1:1723534/1‑74 (MQ=255)                                                                                                                            actCGACGTCCTCACGCACTC‑GCCATAACCGGCCTTGTTTCATGGCCGGTGGACAAAATAAATTCTGCTTAGCa                                                                   <  2:1723534/74‑1 (MQ=255)                                                                                                                            actCGACGTCCTCACGCACTC‑GCCATAACCGGCCTTGTTTCATGGCCGGTGGACAAAATAAATTCTGCTTAGCATAACGACGCAATGTGGACACACTTGGAGGATTACTTCTGTATTTTTCAGCAGCCCATTCTTCAag  >  2:1706242/1‑139 (MQ=255)                                                                                                                            actCGACGTCCTCACGCACTC‑GCCATAACCGGCCTTGTTTCATGGCCGGTGGACAAAATAAATTCTGCTTAGCATAACGACGCAATGTGGACACACTTGGAGGATTACTTCTGTATTTTTCAGCAGCCCATTCTTCAag  >  2:917543/1‑139 (MQ=255)                                                                                                                                 |                                                                                                                                       AAGCGGATATAAGTTAGGGACTGAAACATTATTCTTACGCGGTCTGGCTGCCATTACTCAAAATCCGTTGCAAAAGTAATGAGTCATTTTTCTTGATTACAGGTGTTACCAACTCCCCAACTAACTCGGCGTCCTCACGCACTC‑GCCATAACCGGCCTTGTTTCATGGCCGGTGGACAAAATAAATTCTGCTTAGCATAACGACGCAATGTGGACACACTTGGAGGATTACTTCTGTATTTTTCAGCAGCCCATTCTTCAAG  >  NC_000913/1200753‑1201014

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑