Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 1,389,895 G→A *322* (TAG→TAA) 
P235L (CCT→CTT) 		 ycjG →
mpaA ←		 L‑Ala‑D/L‑Glu epimerase
murein peptide amidase A

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009131,389,8950GA100.0% 200.9 / NA 62*322* (TAG→TAA) 
P235L (CCT→CTT) 		ycjG
mpaA		L‑Ala‑D/L‑Glu epimerase
murein peptide amidase A
Reads supporting (aligned to +/- strand):  ref base G (0/0);  new base A (30/32);  total (30/32)

GTACCTCTCGTGCCATTAGCGCCGCTTTACCGCTGGTGCCGCAGGTCAGTTTCGCCGATCTTGACGGACCGACCTGGCTGGCGGTAGATGTGGAACCGGCGCTTCAGTTCACGACGGGCGAATTGCATCTTTAGGATGCCAGCGCAGCAAGTTTGCCATCGCAAAGAGATATTTTTCGCTGGCTTCGTCGGAGGAGATGGGCGGAAACTCTGCGGTGATGCAATGCAAGTTCAGATCTGCACACCAACTGCCGAAAGAGCCAGGC  >  NC_000913/1389762‑1390026
                                                                                                                                     |                                                                                                                                   
gtACCTCTCGTGCCATTAGCGCCGCTTTACCGCTGGTGCCGCAGGTCAGTTTCGCCGATCTTGACGGACCGACCTGGCTGGCGGTAGATGTGGAACCGGCGCTTCAGTTCACGACGGGCGAATTGCATCTTTAAGATGc                                                                                                                                <  2:1693643/139‑1 (MQ=255)
      ctcGTGCCATTAGCGCCGCTTTACCGCTGGTGCCGCAGGTCAGTTTCGCCGATCTTGACGGACCGACCTGGCTGGCGGTAGATGTGGAACCGGCGCTTCAGTTCACGACGGGCGAATTGCATCTTTAAGATGCCAgcgc                                                                                                                          >  1:52051/1‑139 (MQ=255)
       tcGTGCCATTAGCGCCGCTTTACCGCTGGTGCCGCAGGTCAGTTTCGCCGATCTTGACGGACCGACCTGGCTGGCGGTAGATGTGGAACCGGCGCTTCAGTTCACGACGGGCGAATTGCATCTTTAAGATGCCAGCgca                                                                                                                         <  1:1267440/139‑1 (MQ=255)
       tcGTGCCATTAGCGCCGCTTTACCGCTGGTGCCGCAGGTCAGTTTCGCCGATCTTGACGGACCGACCTGGCTGGCGGTAGATGTGGAACCGGCGCTTCAGTTCACGACGGGCGAATTGCATCTTTAAGATGCCAGCgca                                                                                                                         >  1:399065/1‑139 (MQ=255)
         gTGCCATTAGCGCCGCTTTACCGCTGGTGCCGCAGGTCAGTTTCGCCGATCTTGACGGACCGACCTGGCTGGCGGTAGATGTGGAACCGGCGCTTCAGTTCACGACGGGCGAATTGCATCTTTAAGATGCCAGCgcagc                                                                                                                       >  1:1581248/1‑139 (MQ=255)
              aTTAGCGCCGCTTTACCGCTGGTGCCGCAGGTCAGTTTCGCCGATCTTGACGGACCGACCTGGCTGGCGGTAGATGTGGAACCGGCGCTTCAGTTCACGACGGGCGAATTGCATCTTTAAGATGCCAGCGCAGCAAGtt                                                                                                                  >  1:271133/1‑139 (MQ=255)
                   cgccgcTTTACCGCTGGTGCCGCAGGTCAGTTTCGCCGATCTTGACGGACCGACCTGGCTGGCGGTAGATGTGGAACCGGCGCTTCAGTTCACGACGGGCGAATTGCATCTTTAAGATGCCAGCGCAGCAAGTTTGCCa                                                                                                             <  2:52051/139‑1 (MQ=255)
                     ccgcTTTACCGCTGGTGCCGCAGGTCAGTTTCGCCGATCTTGACGGACCGACCTGGCTGGCGGTAGATGTGGAACCGGCGCTTCAGTTCACGACGGGCGAATTGCATCTTTAAGATGCCAGCgca                                                                                                                         <  2:592640/125‑1 (MQ=255)
                     ccgcTTTACCGCTGGTGCCGCAGGTCAGTTTCGCCGATCTTGACGGACCGACCTGGCTGGCGGTAGATGTGGAACCGGCGCTTCAGTTCACGACGGGCGAATTGCATCTTTAAGATGCCAGCgca                                                                                                                         >  1:592640/1‑125 (MQ=255)
                       gcTTTACCGCTGGTGCCGCAGGTCAGTTTCGCCGATCTTGACGGACCGACCTGGCTGGCGGTAGATGTGGAACCGGCGCTTCAGTTCACGACGGGCGAATTGCATCTTTAAGATGCCAGCGCAGCAAGTTTGCCATCGc                                                                                                         <  2:399065/139‑1 (MQ=255)
                                   gTGCCGCAGGTCAGTTTCGCCGATCTTGACGGACCGACCTGGCTGGCGGTAGATGTGGAACCGGCGCTTCAGTTCACGACGGGCGAATTGCATCTTTAAGATGCCAGCgcagc                                                                                                                       >  2:325608/1‑113 (MQ=255)
                                   gTGCCGCAGGTCAGTTTCGCCGATCTTGACGGACCGACCTGGCTGGCGGTAGATGTGGAACCGGCGCTTCAGTTCACGACGGGCGAATTGCATCTTTAAGATGCCAGCgcagc                                                                                                                       <  1:325608/113‑1 (MQ=255)
                                   gTGCCGCAGGTCAGTTTCGCCGATCTTGACGGACCGACCTGGCTGGCGGTAGATGTGGAACCGGCGCTTCAGTTCACGACGGGCGAATTGCATCTTTAAGATGCCAGCGCAGCAAGTTTGCCATCGCAAAGAGATAttt                                                                                             >  1:325711/1‑139 (MQ=255)
                                              cAGTTTCGCCGATCTTGACGGACCGACCTGGCTGGCGGTAGATGTGGAACCGGCGCTTCAGTTCACGACGGGCGAATTGCATCTTTAAGATGCCAGCGCAGCAAGTTTGCCATCGCAAAGAGATATTTTTCGCTGGCtt                                                                                  >  1:1714641/1‑139 (MQ=255)
                                                 tttCGCCGATCTTGACGGACCGACCTGGCTGGCGGTAGATGTGGAACCGGCGCTTCAGTTCACGACGGGCGAATTGCATCTTTAAGATGCCAGCGCAGCAAGTTTGCCATCGCAAAGAGATATTTTTCGCTGGCTtcgt                                                                               <  2:1791146/139‑1 (MQ=255)
                                                          tCTTGACGGACCGACCTGGCTGGCGGTAGATGTGGAACCGGCGCTTCAGTTCACGACGGGCGAATTGCATCTTTAAGATGCCAGCGCAGCAAGTTTGCCATCGCAAAGAGATATTTTTCGCTGGCTTCGTCGGAGgaga                                                                      <  2:1714641/139‑1 (MQ=255)
                                                               aCGGACCGACCTGGCTGGCGGTAGATGTGGAACCGGCGCTTCAGTTCACGACGGGCGAATTGCATCTTTAAGATGCCAGCGCAGCAAGTTTGCCATCGCAAAGAGATATTTTTCGCTGGCTTCGTCGGAGGAGATGGGc                                                                 >  1:43583/1‑139 (MQ=255)
                                                                  gaccgaccTGGCTGGCGGTAGATGTGGAACCGGCGCTTCAGTTCACGACGGGCGAATTGCATCTTTAAGATGCCAGCGCAGCAAGTTTGCCATCGCAAAGAGATATTTTTCGCTGGCTTCGTCGGAGGAGATGGGCGGa                                                              <  2:1029683/139‑1 (MQ=255)
                                                                  gaccgaccTGGCTGGCGGTAGATGTGGAACCGGCGCTTCAGTTCACGACGGGCGAATTGCATCTTTAAGATGCCAGCGCAGCAAGTTTGCCATCGCAAAGAGATATTTTTCGCTGGCTTCGTCGGAGGAGATGGGCGGa                                                              <  1:1007931/139‑1 (MQ=255)
                                                                    ccgaccTGGCTGGCGGTAGATGTGGAACCGGCGCTTCAGTTCACGACGGGCGAATTGCATCTTTAAGATGCCAGCGCAGCAAGTTTGCCATCGCAAAGAGATATTTTTCGCTGGCTTCGTCGGAGGAGATGGGCGGaaa                                                            >  1:1165749/1‑139 (MQ=255)
                                                                     cgaccTGGCTGGCGGTAGATGTGGAACCGGCGCTTCAGTTCACGACGGGCGAATTGCATCTTTAAGATGCCAGCgca                                                                                                                         >  2:379210/1‑77 (MQ=255)
                                                                     cgaccTGGCTGGCGGTAGATGTGGAACCGGCGCTTCAGTTCACGACGGGCGAATTGCATCTTTAAGATGCCAGCgca                                                                                                                         <  1:379210/77‑1 (MQ=255)
                                                                     cgaccTGGCTGGCGGTAGATGTGGAACCGGCGCTTCAGTTCACGACGGGCGAATTGCATCTTTAAGATGCCAGCGCAGCAAGTTTGCCATCGCAAAGAGATATTTTTCGCTGGCTTCGTCGGAGGAGATGGGCGGAAAc                                                           >  1:1369349/1‑139 (MQ=255)
                                                                            gctggcGGTAGATGTGGAACCGGCGCTTCAGTTCACGACGGGCGAATTGCATCTTTAAGATGCCAGCGCAGCAAGTTTGCCATCGCAAAGAGATATTTTTCGCTGGCTTCGTCGGAGGAGATGGGCGGAAACTCTGCgg                                                    <  1:1329229/139‑1 (MQ=255)
                                                                                 cGGTAGATGTGGAACCGGCGCTTCAGTTCACGACGGGCGAATTGCATCTTTAAGATGCCAGCgca                                                                                                                         <  2:850633/65‑1 (MQ=255)
                                                                                 cGGTAGATGTGGAACCGGCGCTTCAGTTCACGACGGGCGAATTGCATCTTTAAGATGCCAGCgca                                                                                                                         >  1:850633/1‑65 (MQ=255)
                                                                                  ggTAGATGTGGAACCGGCGCTTCAGTTCACGACGGGCGAATTGCATCTTTAAGATGCCAGCGCAGCAAGTTTGCCATCGCAAAGAGATATTTTTCGCTGGCTTCGTCGGAGGAGATGGGCGGAAACTCTGCGGTGatgc                                              <  2:606656/139‑1 (MQ=255)
                                                                                  ggTAGATGTGGAACCGGCGCTTCAGTTCACGACGGGCGAATTGCATCTTTAAGATGCCAGCGCAGCAAGTTTGCCATCGCAAAGAGATATTTTTCGCTGGCTTCGTCGGAGGAGATGGGCGGAAACTCTGCGGTGa                                                 >  1:1606529/1‑136 (MQ=255)
                                                                                  ggTAGATGTGGAACCGGCGCTTCAGTTCACGACGGGCGAATTGCATCTTTAAGATGCCAGCGCAGCAAGTTTGCCATCGCAAAGAGATATTTTTCGCTGGCTTCGTCGGAGGAGATGGGCGGAAACTCTGCGGTGa                                                 <  2:1606529/136‑1 (MQ=255)
                                                                                      gATGTGGAACCGGCGCTTCAGTTCACGACGGGCGAATTGCATCTTTAAGATGCCAGCGCAGCAAGTTTGTCATCGCa                                                                                                        >  2:1794631/1‑77 (MQ=255)
                                                                                      gATGTGGAACCGGCGCTTCAGTTCACGACGGGCGAATTGCATCTTTAAGATGCCAGCGCAGCAAGTTTGTCATCGCa                                                                                                        <  1:1794631/77‑1 (MQ=255)
                                                                                          tgGAACCGGCGCTTCAGTTCACGACGGGCGAATTGCATCTTTAAGATGCCAGCGCAGCAAGTTTGCCATCGCAAAGAGATATTTTTCGCTGGCTtcg                                                                                <  1:772146/97‑1 (MQ=255)
                                                                                          tgGAACCGGCGCTTCAGTTCACGACGGGCGAATTGCATCTTTAAGATGCCAGCGCAGCAAGTTTGCCATCGCAAAGAGATATTTTTCGCTGGCTtcg                                                                                >  2:772146/1‑97 (MQ=255)
                                                                                          tgGAACCGGCGCTTCAGTTCACGACGGGCGAATTGCATCTTTAAGATGCCAGCGCAGCAAGTTTGCCATCGCAAAGAGATATTTTTCGCTGGCTTCGTCGGAGGAGATGGGCGGAAACTCTGCGGTGatgc                                              >  2:1517855/1‑131 (MQ=255)
                                                                                          tgGAACCGGCGCTTCAGTTCACGACGGGCGAATTGCATCTTTAAGATGCCAGCGCAGCAAGTTTGCCATCGCAAAGAGATATTTTTCGCTGGCTTCGTCGGAGGAGATGGGCGGAAACTCTGCGGTGatgc                                              <  1:1517855/131‑1 (MQ=255)
                                                                                              aCCGGCGCTTCAGTTCACGACGGGCGAATTGCATCTTTAAGATGCCAGCGCAGCAAGTTTGCCATCGCAAAGAGATATTTTTCGCTGGCTTCGTCGGAGGAGATGGGCGGAAACTCTGCGGTGATGCAATGCAAGTTCa                                  >  2:1135991/1‑139 (MQ=255)
                                                                                                cGGCGCTTCAGTTCACGACGGGCGAATTGCATCTTTAAGATGCCAGCgca                                                                                                                         >  1:1606982/1‑50 (MQ=255)
                                                                                                cGGCGCTTCAGTTCACGACGGGCGAATTGCATCTTTAAGATGCCAGCgca                                                                                                                         <  2:1606982/50‑1 (MQ=255)
                                                                                                 ggCGCTTCAGTTCACGACGGGCGAATTGCATCTTTAAGATGCCAGCgca                                                                                                                         >  2:1537696/1‑49 (MQ=255)
                                                                                                 ggCGCTTCAGTTCACGACGGGCGAATTGCATCTTTAAGATGCCAGCgca                                                                                                                         <  1:1537696/49‑1 (MQ=255)
                                                                                                  gcgcTTCAGTTCACGACGGGCGAATTGCATCTTTAAGATGCCAGCGCAGCAAGTTTGCCATCGCaaa                                                                                                      >  2:596945/1‑67 (MQ=255)
                                                                                                  gcgcTTCAGTTCACGACGGGCGAATTGCATCTTTAAGATGCCAGCGCAGCAAGTTTGCCATCGCaaa                                                                                                      <  1:596945/67‑1 (MQ=255)
                                                                                                  gcgcTTCAGTTCACGACGGGCGAATTGCATCTTTAAGATGCCAGCGCAGCAAGTTTGCCATCGCAAAGAGATATTTTTCGCTGGCtt                                                                                  >  2:137191/1‑87 (MQ=255)
                                                                                                  gcgcTTCAGTTCACGACGGGCGAATTGCATCTTTAAGATGCCAGCGCAGCAAGTTTGCCATCGCAAAGAGATATTTTTCGCTGGCtt                                                                                  <  1:137191/87‑1 (MQ=255)
                                                                                                  gcgcTTCAGTTCACGACGGGCGAATTGCATCTTTAAGATGCCAGCGCAGCAAGTTTGCCATCGCAAAGAGATATTTTTCGCTGGCTTCGTCGGAGGAGATGGGCGGAAACTCTGCGGTGATGCAATGCAAGTTCAGATc                              <  2:271133/139‑1 (MQ=255)
                                                                                                       tCAGTTCACGACGGGCGAATTGCATCTTTAAGATGCCAGCGCAGCAAGTTTGCCATCGCAAAGAGATATTTTTCGCTGGCTTCGTCGGAGgaga                                                                      >  2:228482/1‑94 (MQ=255)
                                                                                                       tCAGTTCACGACGGGCGAATTGCATCTTTAAGATGCCAGCGCAGCAAGTTTGCCATCGCAAAGAGATATTTTTCGCTGGCTTCGTCGGAGgaga                                                                      <  1:228482/94‑1 (MQ=255)
                                                                                                       tCAGTTCACGACGGGCGAATTGCATCTTTAAGATGCCAGCGCAGCAAGTTTGCCATCGCAAAGAGATATTTTTCGCTGGCTTCGTCGGAGGAGATGGGCGGAAACTCTGCGGTGATGCAATGCAAGTTCAGATCTGcac                         >  2:1287842/1‑139 (MQ=255)
                                                                                                          gTTCACGACGGGCGAATTGCATCTTTAAGATGCCAGCGCAGCAAGTTTGCCATCGCAAAGAGATATTTTTCGCTGGCTTCGTCGGAGGAGATGGGCGGAAACTCTGCGGTGATGCAATGCAAGTTCAGATCTGCACAcc                      <  1:1135991/139‑1 (MQ=255)
                                                                                                                gacgGGCGAATTGCATCTTTAAGATGCCAGCGCAGCAAGTTTGCCATCGCAAAGAGATATTTTTCGCTGGCTTCGTCGGAGgaga                                                                      <  2:1274279/85‑1 (MQ=255)
                                                                                                                gacgGGCGAATTGCATCTTTAAGATGCCAGCGCAGCAAGTTTGCCATCGCAAAGAGATATTTTTCGCTGGCTTCGTCGGAGGAGATGGGCGGAAACTCTGCGGTGATGCAATGCAAGTTCAGATCTGCACAcc                      >  2:858550/1‑133 (MQ=255)
                                                                                                                gacgGGCGAATTGCATCTTTAAGATGCCAGCGCAGCAAGTTTGCCATCGCAAAGAGATATTTTTCGCTGGCTTCGTCGGAGGAGATGGGCGGAAACTCTGCGGTGATGCAATGCAAGTTCAGATCTGCACAcc                      <  1:858550/133‑1 (MQ=255)
                                                                                                                gacgGGCGAATTGCATCTTTAAGATGCCAGCGCAGCAAGTTTGCCATCGCAAAGAGATATTTTTCGCTGGCTTCGTCGGAGGAGATGGGCGGAAACTCTGCGGTGATGCAATGCAAGTTCAGATCTGCACACCAACTGc                >  1:524702/1‑139 (MQ=255)
                                                                                                                gacgGGCGAATTGCATCTTTAAGATGCCAGCGCAGCAAGTTTGCAATCGCAAAGAGATATTTTTCGCTGGCTTCGTCGGAGgaga                                                                      >  1:1274279/1‑85 (MQ=255)
                                                                                                                  cgGGCGAATTGCATCTTTAAGATGCCAGGGCAGCGAGTTTGCCATCGCAGAGAGATATTTTACGCTGGCTTCGTCGGAGGAGATGGGCGGAAACTCTGCGGTGATGCAAAGCAAGTTCAGATCTGCACACCAACTGCCg              >  1:1161543/1‑139 (MQ=255)
                                                                                                                   gggCGAATTGCATCTTTAAGATGCCAGCGCAGCAAGTTTGCCATCGCAAAGAGATATTTTTCGCTGGCTTCGTCGGAGGAGATGGGCGGAAACTCTGCGGTGATGCAATGCAAGTTCAGATCTGCACACCAACTGCCGa             <  2:531182/139‑1 (MQ=255)
                                                                                                                    ggCGAATTGCATCTTTAAGATGCCAGCGCAGCAAGTTTGCCATCGCAAAGAGATCTTTTTCGCTGGCTTCGTCGGAGGAGATGGGCGGAAACTCTg                                                       <  1:1106109/96‑1 (MQ=255)
                                                                                                                    agCGAATTGCATCTTTAAGATGCCAGCGCAGCAAGTTTGCCATCGCAAAGAGATATTTTTCGCTGGCTTCGTCGGAGTAGATGGGCGGAAACTCTg                                                       >  2:1106109/2‑96 (MQ=255)
                                                                                                                     gCGAATTGCATCTTTAAGATGCCAGCGCAGCAAGTTTGCCATCGCaaa                                                                                                      >  1:775792/1‑48 (MQ=255)
                                                                                                                     gCGAATTGCATCTTTAAGATGCCAGCGCAGCAAGTTTGCCATCGCaaa                                                                                                      <  2:775792/48‑1 (MQ=255)
                                                                                                                             cATCTTTAAGATGCCAGCGCAGCAAGTTTGCCATCGCAAAGAGATATTTTTCGCTGGCTTCGTCGGAGGAGATGGGCGGAAACTCTGCGGTGATGCAATGCAAGTTCAGATCTGCACACCAACTGCCGAAAGAGCCAgg   <  2:43583/139‑1 (MQ=255)
                                                                                                                              aTCTTTAAGATGCCAGCGCAGCAAGTTTGCCATCGCAAAGAGATATTTTTCGCTGGCTTCGTCGGAGGAGATGGGCGGAAACTCTGCGGTGATGCAATGCAAGTTCAGATCTGCACACCAACTGCCGAAAGAGCCAGGc  <  2:1369349/139‑1 (MQ=255)
                                                                                                                                     |                                                                                                                                   
GTACCTCTCGTGCCATTAGCGCCGCTTTACCGCTGGTGCCGCAGGTCAGTTTCGCCGATCTTGACGGACCGACCTGGCTGGCGGTAGATGTGGAACCGGCGCTTCAGTTCACGACGGGCGAATTGCATCTTTAGGATGCCAGCGCAGCAAGTTTGCCATCGCAAAGAGATATTTTTCGCTGGCTTCGTCGGAGGAGATGGGCGGAAACTCTGCGGTGATGCAATGCAAGTTCAGATCTGCACACCAACTGCCGAAAGAGCCAGGC  >  NC_000913/1389762‑1390026

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑