| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 1,630,986 | A→G | intergenic (‑73/+16) | ydfI ← / ← ydfJ | putative NAD‑dependent D‑mannonate oxidoreductase/pseudogene, MFS transporter family, interrupted by Qin prophage,Phage or Prophage Related, putative transport protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,630,986 | 0 | A | G | 100.0% | 216.7 / NA | 60 | intergenic (‑73/+16) | ydfI/ydfJ | putative NAD‑dependent D‑mannonate oxidoreductase/pseudogene, MFS transporter family, interrupted by Qin prophage,Phage or Prophage Related, putative transport protein |
| Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (35/25); total (35/25) | |||||||||||
AGCCAGGTTATTAAGATCATAAACAGGGAGTGTCGCTTTTGCTGATAACAAATTATTTCCCATAACAATTCCTTAAATATAAATATGGCAAGCTATATGTTTTGTTATATGAATAAAAATCCCCTCTCCGGTAA‑GA‑GAAGGGATTAAGGGTTTACAGACTTCTGGAAGGTTGCGCAGCTCTTACAACACGCGGTTGATCTTCCGCAGCGTCTTCCAGCGCACTTAAATCACGGTCTTTCACCTCTGGCATTTTCAGCGCAGAGATTAAACC > NC_000913/1630851‑1631121 | aGCCAGGTTATTAAGATCATAAACAGGGAGTGTCGCTTTTGCTGATAACAAATTATTTCCCATAACAATTCCTTAAATATAAATATGGCAAGCTATATGTTTTGTTATATGAATAAAAATCCCCTCTCCGGTAA‑GG‑Gaa < 1:1690438/139‑1 (MQ=255) gCCAGGTTATTAAGATCATAAACAGGGAGTGTCGCTTTTGCTGATAACAAATTATTTCCCATAACAATTCCTTAAATATAAATATGGCAAGCTATATGTTTTGTTATATGAATAAAAATCCCCTCTCCGGTAA‑GG‑GAAg > 1:52877/1‑139 (MQ=255) aaaCAGGGAGTGTCGCTTTTGCTGATAACAAATTATTTCCCATAACAATTCCTTAAATATAAATATGGCAAGCTATATGTTTTGTTATATGAATAAAAATCCCCTCTCCGGTAA‑GG‑GAAGGGATTAAGGGTTTACAGAc > 1:173450/1‑139 (MQ=255) aGTGTCGCTTTTGCTGATAACAAATTATTTCCCATAACAATTCCTTAAATATAAATATGGCAAGCTATATGTTTTGTTATATGAATAAAAATCCCCTCTCCGGTAA‑GG‑GAAGGGATTAAGGGTTTACAGACTTCTGGaa > 1:125610/1‑139 (MQ=255) tCGCTTTTGCTGATAACAAATTATTTCCCATAACAATTCCTTAAATATAAATATGGCAAGCTATATGTTTTGTTATATGAATAAAAATCCCCTCTCCGGTAA‑GG‑GAAGGGATTAAGGGTTTACAGACTTCTGGAAGGtt > 2:663380/1‑139 (MQ=255) tAACAATTCCTTAAATATAAATATGGCAAGCTATATGTTTTGTTATATGAATAAAAATCCCCTCTCCGGTAA‑GG‑GAAGGGATTAAGGGTTTACAGACTTCTGGAAGGTTGCGCAGCTCTTACAACACGCGGTTGATCtt > 1:1589422/1‑139 (MQ=255) tAACAATTCCTTAAATATAAATATGGCAAGCTATATGTTTTGTTATATGAATAAAAATCCCCTCTCCGGTAA‑GG‑GAAGGGATTAAGGGTTTACAGACTTCTGGAAGGTTGCGCAGCTCTTACAACACGCGGTTGATCtt > 1:1763224/1‑139 (MQ=255) ttCCTTAAATATAAATATGGCAAGCTATATGTTTTGTTATATGAATAAAAATCCCCTCTCCGGTAA‑GGGGAAGGGATTAAGGGTTTACAGACTTCTGGAAGGTTGCGCAGCTCTTACAACACGCGGTTGATCTTCCGCa > 2:1781948/1‑139 (MQ=255) ttCCTTAAATATAAATATGGCAAGCTATATGTTTTGTTATATGAATAAAAATCCCCTCTCCGGTAA‑GG‑GAAGGGATTAAGGGTTTACAGACTTCTGGAAGGTTGCGCAGCTCTTACAACACGCGGTTGATCTTCCGCAg > 2:1660219/1‑139 (MQ=255) ttCCTTAAATATAAATATGGCAAGCTATATGTTTTGTTATATGAATAAAAATCCCCTCTCCGGTAA‑GG‑GAAGGGATTAAGGGTTTACAGACTTCTGGAAGGTTGCGCAGCTCTTACAACACGCGGTTGATCTTCCGCAg > 2:468702/1‑139 (MQ=255) ttCCTTAAATATAAATATGGCAAGCTATATGTTTTGTTATATGAATAAAAATCCCCTCTCCGGTAA‑GG‑GAAGGGATTAAGGGTTTACAGACTTCTGGAAGGTTGCGCAGCTCTTACAACACGCGGTTGATCTTCCGCAg > 1:814391/1‑139 (MQ=255) ttCCTTAAATATAAATATGGCAAGCTATATGTTTTGTTATATGAATAAAAATCCCCTCTCCGGTAA‑GG‑GAAGGGATTAAGGGTTTACAGACTTCTGGAAGGTTGCGCAGCTCTTACAACACGCGGTTGATCTTCCGCAg > 2:801178/1‑139 (MQ=255) taaatataaataTGGCAAGCTATATGTTTTGTTATATGAATAAAAATCCCCTCTCCGGTAA‑GG‑GAAGGGATTAAGGGTTTACAGACTTCTGGAAGGTTGCGCa < 1:409520/103‑1 (MQ=255) taaatataaataTGGCAAGCTATATGTTTTGTTATATGAATAAAAATCCCCTCTCCGGTAA‑GG‑GAAGGGATTAAGGGTTTACAGACTTCTGGAAGGTTGCGCa > 2:409520/1‑103 (MQ=255) aaatataaatatGGCAAGCTATATGTTTTGTTATATGAATAAAAATCCCCTCTCCGGTAA‑GG‑GAAGGGGTTAAGGGTTTACAGACTTCTGGAAGGTTGCGCAGCTCTTACAACACGCGGTTGATCTTCCGCAGCGTCtt > 1:803732/1‑139 (MQ=255) aaatataaatatGGCAAGCTATATGTTTTGTTATATGAATAAAAATCCCCTCTCCGGTAA‑GG‑GAAGGGATTAAGGGTTTACAGACTTCTGGAAGGTTGCGCAGCTCTTACAACACGCGGTTGATCTTCCGCAGCGTCtt > 1:636901/1‑139 (MQ=255) aatataaatatGGCAAGCTATATGTTTTGTTATATGAATAAAAATCCCCTCTCCGGTAA‑GG‑GAAGGGATTAAGGGTTTACAGACTTCTGGAAGGTTGCGCAGCTCTTACAACACGCGGTTGATCTTCCGCAGCGTCTTc < 1:801178/139‑1 (MQ=255) aatataaatatGGCAAGCTATATGTTTTGTTATATGAATAAAAATCCCCTCTCCGGTAA‑GG‑GAAGGGATTAAGGGTTTACAGACTTCTGGAAGGTTGCGCAGCTCTTACAACACGCGGTTGATCTTCCGCAGCGTCTTc < 2:1589422/139‑1 (MQ=255) atataaatatGGCAAGCTATATGTTTTGTTATATGAATAAAAATCCCCTCTCCGGTAA‑GG‑GAAGGGATTAAGGGTTTACAGACTTCTGGAAGGTTGCGCAGCTCTTACAACACGCGGTTGATCTTCCGCAGCGTCTTcc > 1:585562/1‑139 (MQ=255) ataaatatGGCAAGCTATATGTTTTGTTATATGAATAAAAATCCCCTCTCCGGTAA‑GG‑GAAGGGATTAAGGGTTTACAGACTTCTGGAAGGTTGCGCAGCTCTTACAACACGCGGTTGATCTTCCGCAGCGTCTTCCAg < 2:173450/139‑1 (MQ=255) taaatatGGCAAGCTATATGTTTTGTTATATGAATAAAAATCCCCTCTCCGGTAAGGG‑GAAGGGATTAAGGGTTTACAGACTTCTGGAAGGTTGCGCAGCTCTTACAACACGCGGTTGATCTTCCGCAGCGTCTTCCAg < 1:1781948/139‑1 (MQ=255) aaatatGGCAAGCTATATGTTTTGTTATATGAATAAAAATCCCCTCTCCGGTAA‑GG‑GAAGGGATTAAGGGTTTACAGACTTCTGGAAGGTTGCGCAGCTCTTACAACACGCGGTTGATCTTCCGCAGCGTCTTCCAgcg < 1:1660219/139‑1 (MQ=255) aaatatGGCAAGCTATATGTTTTGTTATATGAATAAAAATCCCCTCTCCGGTAA‑CG‑GAAGGGATTAAGTGTTTACAGACTTCTGGAAGGTTGCGCAGCTCTTACAACTCGCGGTTGATCTTCCGCAGCGTCTTCCAgcg < 1:663235/139‑1 (MQ=255) aatatGGCAAGCTATATGTTTTGTTATATGAATAAAAATCCCCTCTCCGGTAA‑GG‑GAAGGGATTAAGGGTTTACAGACTTCTGGTAGGTTGCGCAGCTCTTACAACACGCGGt > 1:1627315/1‑113 (MQ=255) aatatGGCAAGCTATATGTTTTGTTATATGAATAAAAATCCCCTCTCCGGTAA‑GG‑GAAGGGATTAAGGGTTTACAGACTTCTGGAAGGTTGCGCAGCTCTTACAACACGCGGt < 2:1627315/113‑1 (MQ=255) aatatGGCAAGCTATATGTTTTGTTATATGAATAAAAATCCCCTCTCCGGTAA‑GG‑GAAGGGATTAAGGGTTTACAGACTTCTGGAAGGTTGCGCAGCTCTTACAACACGCGGTTGATCTTCCGCAGCGTCTTCCAgcgc < 2:1763224/139‑1 (MQ=255) atatGGCAAGCTATATGTTTTGTTATATGAATAAAAATCCCCTCTCCGGTAA‑GG‑GAAGGGATTAAGGGTTTACAGACTTCTGGAAGGTTGCGCAGCTCTTACAACACGCGGTTGATCTTCCGCAGCGTCTTCCAg > 2:1018439/1‑135 (MQ=255) atatGGCAAGCTATATGTTTTGTTATATGAATAAAAATCCCCTCTCCGGTAA‑GG‑GAAGGGATTAAGGGTTTACAGACTTCTGGAAGGTTGCGCAGCTCTTACAACACGCGGTTGATCTTCCGCAGCGTCTTCCAg < 1:1018439/135‑1 (MQ=255) atGGCAAGCTATATGTTTTGTTATATGAATAAAAATCCCCTCTCCGGTAA‑GG‑GAAGGGATTAAGGGTTTACAGACTTCTGGAAGGTTGCGCAGCTCTTACAACACGCGGTTGATCTTCCGCAGCGTCTTCCAGCGCACt < 2:585562/139‑1 (MQ=255) ggCAAGCTATATGTTTTGTTATATGAATAAAAATCCCCTCTCCGGTAA‑GG‑GAAGGGATTAAGGGTTTACAGACTTCTGGAAGGTTGCGCAGCTCTTACAACACGCGGTTGATCTTCCGCAGCGTCTTCCAGCGCACTTa > 1:1787648/1‑139 (MQ=255) gCAAGCTATATGTTTTGTTATATGAATAAAAATCCCCTCTCCGGTAA‑GG‑GAAGGGATTAAGGGTTTACAGACTTCTGGAAgg < 2:246702/82‑1 (MQ=255) gCAAGCTATATGTTTTGTTATATGAATAAAAATCCCCTCTCCGGTAA‑GG‑GAAGGGATTAAGGGTTTACAGACTTCTGGAAgg > 1:246702/1‑82 (MQ=255) gCAAGCTATATGTTTTGTTATATGAATAAAAATCCCCTCTCCGGTAA‑GG‑GAAGGGATTAAGGGTTTACAGACTTCTGGAAGGTTGCGCAGCTCTTACAACACGCGGTTGATCTTCCGCAGCGTCTTCCAGCGCACTTaa > 1:605777/1‑139 (MQ=255) cAAGCTATATGTTTTGTTATATGAATAAAAATCCCCTCTCCGGTAA‑GG‑GAAGGGATTAAGGGTTTACAGACTTCTGGAAGGTTGCGCAGCTCTTACAACACGCGGTTGATCTTCCGCAGCGTCTTCCAGCGCACTTaaa > 2:1722033/1‑139 (MQ=255) aGCTATATGTTTTGTTATATGAATAAAAATCCCCTCTCCGGTAA‑GG‑GAAGGGATTAAGGGTTTACAGACTTCTGGAAGGTTGCGCAGCTCTTACAACACGCGGTTGATCTTCCGCAGCGTCTTCCAgcg < 2:36972/129‑1 (MQ=255) aGCTATATGTTTTGTTATATGAATAAAAATCCCCTCTCCGGTAA‑GG‑GAAGGGATTAAGGGTTTACAGACTTCTGGAAGGTTGCGCAGCTCTTACAACACGCGGTTGATCTTCCGCAGCGTCTTCCAgcg > 1:36972/1‑129 (MQ=255) cTATATGTTTTGTTATATGAATAAAAATCCCCTCTCCGGTAA‑GG‑GAAGGGATTAAGGGTTTACAGACTTCTGGAAGGTTGCGCAGCTCTTACAACACGCGGTTGATCTTCCGCAGCGTCTTCCAGCGCACTTAAATCAc < 2:52877/139‑1 (MQ=255) tataTGTTTTGTTATATGAATGAAAATCCCCTCTCCGGTAA‑GG‑GAAGGGATTAAGGGTTTACAGACTTCTGGAAGGTTGCGCAGCTCTTACAACACGCGGTTGATCTTCCGCAGCGTCTTCCAGCGCACTTAAATCACg < 2:31061/139‑1 (MQ=255) tataTGTTTTGTTATATGAATAAAAATCCCCTCTCCGGTAA‑GG‑GAAGGGATTAAGGGTTTACAGACTTCTGGAAGGTTGCGCAGCTCTTACAACACGCGGTTGATCTTCCGCAGCGTCTTCCAGCGCACTTAAATCACg < 1:468702/139‑1 (MQ=255) tatGTTTTGTTATATGAATAAAAATCCCCTCTCCGGTAA‑GG‑GAAGGGATTAAGGGTTTACAGACTTCTGGAAGGTTGCGCa < 2:330224/81‑1 (MQ=255) tatGTTTTGTTATATGAATAAAAATCCCCTCTCCGGTAA‑GG‑GAAGGGATTAAGGGTTTACAGACTTCTGGAAGGTTGCGCa > 1:330224/1‑81 (MQ=255) ttGTTATATGAATAAAAATCCCCTCTCCGGTAA‑GG‑GAAGGGATTAAGGGTTTACAGACTTCTGGAAGGTTGCGCAGCTCTTACAACACGCGGTTGATCTTCCGCAGCGTCTTCCAGCGCACTTAAATCACGGTCTTTCa > 1:1357957/1‑139 (MQ=255) tGTTATATGAATAAAAATCCCCTCTCCGGTAA‑GG‑GAAGGGATTAAGGGTTTACAGACTTCTGGAAGGTTGCGCAGCTCTTACAACACGCGGt < 2:981301/92‑1 (MQ=255) tGTTATATGAATAAAAATCCCCTCTCCGGTAA‑GG‑GAAGGGATTAAGGGTTTACAGACTTCTGGAAGGTTGCGCAGCTCTTACAACACGCGGt > 1:981301/1‑92 (MQ=255) tGTTATATGAATAAAAATCCCCTCTCCGGTAA‑GG‑GAAGGGATTAAGGGTTTACAGACTTCTGGAAGGTTGCGCAGCTCTTACAACACGCGGTTGATCTTCCg < 2:853672/102‑1 (MQ=255) tGTTATATGAATAAAAATCCCCTCTCCGGTAA‑GG‑GAAGGGATTAAGGGTTTACAGACTTCTGGAAGGTTGCGCAGCTCTTACAACACGCGGTTGATCTTCCg > 1:853672/1‑102 (MQ=255) tGTTATATGAATAAAAATCCCCTCTCCGGTAA‑GG‑GAAGGGATTAAGGGTTTACAGACTTCTGGAAGGTTGCGCAGCTCTTACAACACGCGGTTGATCTTCCGCAGCGTCTTCCAGCGCACTTAAATCAc > 2:886953/1‑129 (MQ=255) tGTTATATGAATAAAAATCCCCTCTCCGGTAA‑GG‑GAAGGGATTAAGGGTTTACAGACTTCTGGAAGGTTGCGCAGCTCTTACAACACGCGGTTGATCTTCCGCAGCGTCTTCCAGCGCACTTAAATCAc < 1:886953/129‑1 (MQ=255) tGTTATATGAATAAAAATCCCCTCTCCGGTAA‑GG‑GAAGGGATTAAGGGTTTACAGACTTCTGGAAGGTTGCGCAGCTCTTACAACACGCGGTTGATCTTCCGCAGCGTCTTCCAGCGCACTTAAATCACGGTCTTTCAc > 2:759405/1‑139 (MQ=255) ttATATGAATAAAAATCCCCTCTCCGGTAA‑GG‑GAAGGGATTAAGGGTTTACAGACTTCTGGAAGGTTGCGCAGCTCTTACAACACGCGGTTGATCTTCCGCAGCGTCTTCCAGCGCACTTAAATCACGGTCTTTCACct < 2:1357957/139‑1 (MQ=255) tatGAATAAAAATCCCCTCTCCGGTAA‑GG‑GAAGGGATTAAGGGTTTACAGACTTCTGGAAGGTTGCGCAGCTCTTACAACACGCGGTTGATCTTCCGCAGCGTCTTCCAg > 2:807751/1‑110 (MQ=255) tatGAATAAAAATCCCCTCTCCGGTAA‑GG‑GAAGGGATTAAGGGTTTACAGACTTCTGGAAGGTTGCGCAGCTCTTACAACACGCGGTTGATCTTCCGCAGCGTCTTCCAg < 1:807751/110‑1 (MQ=255) tGAATAAAAATCCCCTCTCCGGTAA‑GG‑GAAGGGATTAAGGGTTTACAGACTTCTGGAAGGTTGCGCa > 1:113298/1‑67 (MQ=255) tGAATAAAAATCCCCTCTCCGGTAA‑GG‑GAAGGGATTAAGGGTTTACAGACTTCTGGAAGGTTGCGCa < 2:113298/67‑1 (MQ=255) tGAATAAAAATCCCCTCTCCGGTAA‑GG‑GAAGGGATTAAGGGTTTACAGACTTCTGGAAGGTTGCGCAGCTCTTACAACACGCGGTTGATCTTCCGCAGCGTCTTCCAGCGCACTTAAATCACGGTCTTTCACCTCTGGc > 1:1656327/1‑139 (MQ=255) tGAATAAAAATCCCCTCTCCGGTAA‑GG‑GAAGGGATTAAGGGTTTACAGACTTCTGGAAGGTTGCGCAGCTCTTACAACACGCGGTTGATCTTCCGCAGCGTCTTCCAGCGCACTTAAATCACGGTCTTTCACCTCTGGc > 2:1614721/1‑139 (MQ=255) ccccTCTCCGGTAA‑GG‑GAAGGGATTAAGGGTTTACAGACTTCTGGAAGGTTGCGCAGCTCTTACAACACGCGGTTGATCTTCCGCAGCGTCTTCCAGCGCACTTAAATCACGGTCTTTCA‑CTCTGGCATTTTCAGCGCa < 2:636901/139‑1 (MQ=255) tcCGGTAA‑GG‑GAAGGGATTAAGGGTTTACAGACTTCTGGAAGGTTGCGCAGCTCTTACAACACGCGGTTGATCTTCCGCAGCGTCTTCCAGCGCACTTAAATCACGGTCTTTCACCTCTGGCATTTTCAGCGCAGAGAt > 1:1208705/1‑139 (MQ=255) ggTAA‑GG‑GAAGGGATTAAGGGTTTACAGACTTCTGGAAGGTTGCGCAGCTCTTACAACACGCGGTTGATCTTCCGCAGCGTCTTCCAGCGCACTTAAATCACGGTCTTTCACCTCTGGCATTTTCAGCGCAGAGATTaa > 2:135770/1‑139 (MQ=255) gTAA‑GG‑GAAGGGATTAAGGGTTTACAGACTTCTGGAAGGTTGCGCAGCTCTTACAACACGCGGTTGATCTTCCGCAGCGTCTTCCAGCGCACTTAAATCACGGTCTTTCACCTCTGGCATTTTCAGCGCAGAGATTaaa > 2:481838/1‑139 (MQ=255) aa‑gg‑gaagggATTAAGGGTTTACAGACTTCTGGAAGGTTGCGCAGCTCTTACAACACGCGGTTGATCTTCCGCAGCGTCTTCCAGCGCACTTAAATCACGGTCTTTCACCTCTGGCATTTTCAGCGCAGAGATTAAAcc < 2:1787648/139‑1 (MQ=255) | AGCCAGGTTATTAAGATCATAAACAGGGAGTGTCGCTTTTGCTGATAACAAATTATTTCCCATAACAATTCCTTAAATATAAATATGGCAAGCTATATGTTTTGTTATATGAATAAAAATCCCCTCTCCGGTAA‑GA‑GAAGGGATTAAGGGTTTACAGACTTCTGGAAGGTTGCGCAGCTCTTACAACACGCGGTTGATCTTCCGCAGCGTCTTCCAGCGCACTTAAATCACGGTCTTTCACCTCTGGCATTTTCAGCGCAGAGATTAAACC > NC_000913/1630851‑1631121 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |