| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 2,073,157 | T→C | L540P (CTG→CCG) | flu → | CP4‑44 prophage, antigen 43 (Ag43) phase‑variable biofilm formation autotransporter |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 2,073,157 | 0 | T | C | 99.3% | 496.8 / NA | 136 | L540P (CTG→CCG) | flu | CP4‑44 prophage, antigen 43 (Ag43) phase‑variable biofilm formation autotransporter |
| Reads supporting (aligned to +/- strand): ref base T (0/1); new base C (63/72); total (63/73) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 136 total aligned reads displayed.
GAAGTGGCACACTCACTGTCAGCAACACCACACTCACCCAGAAAGCCGTCAACCTGAATGAAGGCACGCTGACGCTGAACGACAGTACCGTCACCACGGATGTCATTGCTCAGCGCGGTACAGCCCTGAAGCTGACCGGCAGCACTGTGCTGAACGGTGCCATTGACCCCACGAATGTCACTCTCGCCTCCGGTGCCACCTGGAATATCCCCGATAACGCCACGGTGCAGTCGGTGGTGGATGACCTCAGCCATGCCGGACAGATTC > NC_000913/2073025‑2073291 | ggCACACTCACTGTCAGCAACACCACACTCACCCAGAAAGCCGTCAACCTGAATGAAGGCACGCTGACGCTGAACGACAGTACCGTCACCACGGATGTCATTGCTCAGCGCGGTACAGCCCTGAAGCCGACCGgcagca > 1:610685/1‑139 (MQ=255) ggCACACTCACTGTCAGCAACACCACACTCACCCAGAAAGCCGTCAACCTGAATGAAGGCACGCTGACGCTGAACGACAGTACCGTCACCACGGATGTCATTGCTCAGCGCGGTACAGCCCTGAAGCCGACCGgcagca < 1:558373/139‑1 (MQ=255) ggCACACTCACTGTCAGCAACACCACACTCACCCAGAAAGCCGTCAACCTGAATGAAGGCACGCTGACGCTGAACGACAGTACCGTCACCACGGATGTCATTGCTCAGCGCGGTACAGCCCTGAAGCCGACCGgcagca < 2:496068/139‑1 (MQ=255) gCACACTCACTGTCAGCAACACCACACTCACCCAGAAAGCCGTCAACCTGAATGAAGGCACGCTGACGCTGAACGACAGTACCGTCACCACGGATGTCATTGCTCAGCGCGGTACAGCCCTGAAGCCGACCGGCAGCAc > 1:1115652/1‑139 (MQ=255) gCACACTCACTGTCAGCAACACCACACTCACCCAGAAAGCCGTCAACCTGAATGAAGGCACGCTGACGCTGAACGACAGTACCGTCACCACGGATGTCATTGCTCAGCGCGGTACAGCCCTGAAGCCGACCGGCAGCAc > 1:264208/1‑139 (MQ=255) acacTCACTGTCAGCAACACCACACTCACCCAGAAAGCCGTCAACCTGAATGAAGGCACGCTGACGCTGAACGACAGTACCGTCACCACGGATGTCATTGCTCAGCGCGGTACAGCCCTGAAGCCGACCGGCAGCACtg < 2:114282/139‑1 (MQ=255) actcactGTCAGCAACACCACACTCACCCAGAAAGCCGTCAACCTGAATGAAGGCACGCTGACGCTGAACGACAGTACCGTCACCACGGATGTCATTGCTCAGCGCGGTACAGCCCTGAAGCCGACCGGCAGCACtgtg > 1:90710/1‑139 (MQ=255) ctGTCAGCAACACCACACTCACCCAGAAAGCCGTCAACCTGAATGAAGGCACGCTGACGCTGAACGACAGTACCGTCACCACGGATGTCATTGCTCAGCGCGGTACAGCCCTGAAGCCGACCGGCAGCACTGTGCTGaa < 2:213500/139‑1 (MQ=255) cAACACCACACTCACCCAGAAAGCCGTCAACCTGAATGAAGGCACGCTGACGCTGAACGACAGTACCGTCACCACGGATGTCATTGCTCAGCGCGGTACAGCCCTGAAGCCGACCGgcagca > 1:63556/1‑122 (MQ=255) cAACACCACACTCACCCAGAAAGCCGTCAACCTGAATGAAGGCACGCTGACGCTGAACGACAGTACCGTCACCACGGATGTCATTGCTCAGCGCGGTACAGCCCTGAAGCCGACCGgcagca < 2:63556/122‑1 (MQ=255) cAACACCACACTCACCCAGAAAGCCGTCAACCTGAATGAAGGCACGCTGACGCTGAACGACAGTACCGTCACCACGGATGTCATTGCTCAGCGCGGTACAGCCCTGAAGCCGACCGGCAGCACTGTGCTGAACGGTGcc > 2:1276902/1‑139 (MQ=255) cAACACCACACTCACCCAGAAAGCCGTCAACCTGAATGAAGGCACGCTGACGCTGAACGACAGTACCGTCACCACGGATGTCATTGCTCAGCGCGGTACAGCCCTGAAGCCGACCGGCAGCACTGTGCTGAACGGTGcc > 1:317697/1‑139 (MQ=255) acacCACACTCACCCAGAAAGCCGTCAACCTGAATGAAGGCACGCTGACGCTGAACGACAGTACCGTCACCACGGATGTCATTGCTCAGCGCGGTACAGCCCTGAAGCCGACCGGCAGCACTGTGCTGAACGGTGCCAt > 1:267499/1‑139 (MQ=255) acacCACACTCA‑CCAGAAAGCCGTCAACCTGAATGAAGGCACGCTGACGCTGAACGACAGTACCGTCACCACGGATGTCATTGCTCAGCGCGGTACAGCCCTGAAGCCGACCGGCAGCACTGTGCTGAACGGTGCCAtt > 2:266831/1‑139 (MQ=255) acacCACACTCA‑CCAGAAAGCCGTCAACCTGAATGAAGGCACGCTGACGCTGAACGACAGTACCGTCACCACGGATGTCATTGCTCAGCGCGGTACAGCCCTGAAGCCGACCGGCAGCACTGTGCTGAACGGTGCCAtt < 1:266831/139‑1 (MQ=255) caccacACTCACCCAGAAAGCCGTCAACCTGAATGAAGGCACGCTGACGCTGAACGACAGTACCGTCACCACGGATGTCATTGCTCAGCGCGGTACAGCCCTGAAGCCGACCGGCAGCACTGTGCTGAACGGTGCCAtt < 1:1777266/139‑1 (MQ=255) cacaCTCACCCAGAAAGCCGTCAACCTGAATGAAGGCACGCTGACGCTGAACGACAGTACCGTCACCACGGATGTCATTGCTCAGCGCGGTACAGCCCTGAAGCCGACCGGCAGCACTGTGCTGAACGGTGCCATTGAc > 1:1017337/1‑139 (MQ=255) cTCACCCAGAAAGCCGTCAACCTGAATGAAGGCACGCTGACGCTGAACGACAGTACCGTCACCACGGATGTCATTGCTCAGCGCGGTACAGCCCTGAAGCCGACCGGCAGCACTGTGCTGAACGGTGCCATTGACCCCa > 1:1445504/1‑139 (MQ=255) tCACCCAGAAAGCCGTCAACCTGAATGAAGGCACGCTGACGCTGAACGACAGTACCGTCACCACGGATGTCATTGCTCAGCGCGGTACAGCCCTGAAGCCGACCGGCAGCACTGTGCTGAACGGTGCCATTGACCCCAc < 2:610685/139‑1 (MQ=255) aCCCAGAAAGCCGTCAACCTGAATGAAGGCACGCTGACGCTGAACGACAGTACCGTCACCACGGATGTCATTGCTCAGCGCGGTACAGCCCTGAAGCCGACCGGCAGCACTGTGCTGAACGGTGCCATTGACCCCACGa > 1:1420746/1‑139 (MQ=255) cccAGAAAGCCGTCAACCTGAATGAAGGCACGCTGACGCTGAACGACAGTACCGTCACCACGGATGTCATTGCTCAGCGCGGTACAGCCCTGAAGCCGACCGGCAGCACTGTGCTGAACGGTGCCATTGACCCCACGaa > 2:1409257/1‑139 (MQ=255) ccAGAAAGCCGTCAACCTGAATGAAGGCACGCTGACGCTGAACGACAGTACCGTCACCACGGATGTCATTGCTCAGCGCGGTACAGCCCTGAAGCCGACCGGCAGCACTGTGCTGAACGGTGCCATTGACCCCACGAAt > 2:199340/1‑139 (MQ=255) cAGAAAGCCGTCAACCTGAATGAAGGCACGCTGACGCTGAACGACAGTACCGTCACCACGGATGTCATTGCTCAGCGCGGTACAGCCCTGAAGCCGACCGGCAGCACTGTGCTGAACGGTGCCATTGACCCCACGAATg > 1:1462278/1‑139 (MQ=255) ccGTCAACCTGAATGAAGGCACGCTGACGCTGAACGACAGTACCGTCACCACGGATGTCATTGCTCAGCGCGGTACAGCCCTGAAGCCGACCGgcagca < 2:1469036/99‑1 (MQ=255) ccGTCAACCTGAATGAAGGCACGCTGACGCTGAACGACAGTACCGTCACCACGGATGTCATTGCTCAGCGCGGTACAGCCCTGAAGCCGACCGgcagca > 1:1469036/1‑99 (MQ=255) ccGTCAACCTGAATGAAGGCACGCTGACGCTGAACGACAGTACCGTCACCACGGATGTCATTGCTCAGCGCGGTACAGCCCTGAAGCCGACCGGCAGCACTGTGCTGAACGGTGCCATTGACCCCACGAATGTCActct > 1:1783158/1‑139 (MQ=255) ccGTCAACCTGAATGAAGGCACGCTGACGCTGAACGACAGTACCGTCACCACGGATGTCATTGCTCAGCGCGGTACAGCCCTGAAGCCGACCGGCAGCACTGTGCTGAACGGTGCCATTGACCCCACGAATGTCActct > 1:153250/1‑139 (MQ=255) gTCAACCTGAATGAAGGCACGCTGACGCTGAACGACAGTACCGTCACCACGGATGTCATTGCTCAGCGCGGTACAGCCCTGAAGCCGACCGGCAGCACTGTGCTGAACGGTGCCATTGACCCCACGAATGTCACTCTCg > 1:1386680/1‑139 (MQ=255) gTCAACCTGAATGAAGGCACGCTGACGCTGAACGACAGTACCGTCACCACGGATGTCATTGCTCAGCGCGGTACAGCCCTGAAGCCGACCGGCAGCACTGTGCTGAACGGTGCCATTGACCCCACGAATGTCACTCTCg > 1:1493667/1‑139 (MQ=255) aCCTGAATGAAGGCACGCTGACGCTGAACGACAGTACCGGCACCACGGATGTCATTGCTCAGCGCGGTACAGCCCTGAAGCCGACCGGCAGCACTGTGCTGAACGGTGCCATTGACCCCACGAATGTCACTCTCGCCTc < 2:156950/139‑1 (MQ=255) aatgaaGGCACGCTGACGCTGAACGACAGTACCGTCACCACGGATGTCATTGCTCAGCGCGGTACAGCCCTGAAGCCGACCGGCAGCACTGTGCTGAACGGTGCCATTGACCCCACGAATGTCACTCTCGCCTCCGGTg < 1:1715205/139‑1 (MQ=255) gaaGGCACGCTGACGCTGAACGACAGTACCGTCACCACGGATGTCATTGCTCAGCGCGGTACAGCCCTGAAGCCGACCGGCAGCACTGTGCTGAACGGTGCCATTGACCCCACGAATGTCACTCTCGCCTCCGGTGCCa < 2:1445504/139‑1 (MQ=255) aaGGCACGCTGACGCTGAACGACAGTACCGTCACCACGGATGTCATTGCTCAGCGCGGTACAGCCCTGAAGCCGACCGGCAGCACTGTGCTGAACGGTGCCATTGACCCCACGAATGTCACTCTCGCCTCCGGTGCCAc < 1:1409257/139‑1 (MQ=255) aGGCACGCTGACGCTGAACGACAGTACCGTCACCACGGATGTCATTGCTCAGCGCGGTACAGCCCTGAAGCCGACCGGCAGCACTGTGCTGAACGGTGCCATTGACCCCACGAATGTCACTCTCGCCTCCGGTGCCAcc < 1:86197/139‑1 (MQ=255) ggCACGCTGACGCTGAACGACAGTACCGTCACCACGGATGTCATTGCTCAGCGCGGTACAGCCCTGAAGCCGACCGGCAGCACTGTGCTGAACGGTGCCATTGACCCCACGAATGTCACTCTCGCCTCCGGTGCCACCt > 1:415220/1‑139 (MQ=255) ggCACGCTGACGCTGAACGACAGTACCGTCACCACGGATGTCATTGCTCAGCGCGGTACAGCCCTGAAGCCGACCGGCAGCACTGTGCTGAACGGTGCCATTGACCCCACGAATGTCACTCTCGCCTCCGGTGCCACCt > 2:268608/1‑139 (MQ=255) ggCACGCTGACGCTGAACGACAGTACCGTCACCACGGATGTCATTGCTCAGCGCGGTACAGCCCTGAAGCCGACCGGCAGCACTGTGCTGAACGGTGCCATTGACCCCACGAATGTCACTCTCGCCTCCGGTGCCACCt > 2:1766796/1‑139 (MQ=255) ggCACGCTGACGCTGAACGACAGTACCGTCACCACGGATGTCATTGCTCAGCGCGGTACAGCCCTGAAGCCGACCGGCAGCACTGTGCTGAACGGTGCCATTGACCCCACGAATGTCACTCTCGCCTCCGGTGCCACCt > 1:775602/1‑139 (MQ=255) cACGCTGACGCTGAACGACAGTACCGTCACCACGGATGTCATTGCTCAGCGCGGTACAGCCCTGAAGCCGACCGGCAGCACTGTGCTGAACGGTGCCATTGACCCCACGAATGTCACTCTCGCCTCCGGTGCCACCTgg > 2:1649809/1‑139 (MQ=255) acgctgacgctgAACGACAGTACCGTCACCACGGATGTCATTGCTCAGCGCGGTACAGCCCTGAAGCCGACCGGCAGCACTGTGCTGAACGGTGCCATTGACCCCACGAATGTCACTCTCGCCTCCGGTGCCACCTGGa < 2:467450/139‑1 (MQ=255) cgctgacgctgaACGACAGTACCGTCACCACGGATGTCATTGCTCAGCGCGGTACAGCCCTGAAGCCGACCGGCAGCACTGTGCTg > 2:349885/1‑86 (MQ=255) cgctgacgctgaACGACAGTACCGTCACCACGGATGTCATTGCTCAGCGCGGTACAGCCCTGAAGCCGACCGGCAGCACTGTGCTGAATGGTGCCATTGACCCCACGAATGTCACTCTCGCCTCCGGt < 1:1441331/128‑1 (MQ=255) gctgaACGACAGTACCGTCACCACGGATGTCATTGCTCAGCGCGGTACAGCCCTGAAGCCGACCGGCAGCACTGTGCTGAACGGTGCCATTGACCCCACGAATGTCACTCTCGCCTCCGGTGCCACCTGGAATATcccc > 1:1562449/1‑139 (MQ=255) tgaACGACAGTACCGTCACCACGGATGTCATTGCTCAGCGCGGTACAGCCCTGAAGCCGACCGGCAGCACTGTGCTGAACGGTGCCATTGACCCCACGAATGTCACTCTCGCCTCCGGTGCCACCTGGAATATCCCCGa < 2:841135/139‑1 (MQ=255) aaCGACAGTACCGTCACCACGGATGTCATTGCTCAGCGCGGTACAGCCCTGAAGCCGACCGGCAGCACTGTGCTGAACGGTGCCATTGACCCCACGAATGTCACTCTCGCCTCCGGTGCCACCTGGAATATCCCCGATa > 1:1209075/1‑139 (MQ=255) aCGACAGTACCGTCACCACGGATGTCATTGCTCAGCGCGGTACAGCCCTGAAGCCGACCGGCAGCACTGTGCTGAACGGTGCCATTGACCCCACGAATGTCACTCTCGCCTCCGGTGCCACCTGGAATATCCCCGATaa < 2:1562449/139‑1 (MQ=255) aCAGTACCGTCACCACGGATGTCATTGCTCAGCGCGGTACAGCCCTGAAGCCGACCGGCAGCACTGTGCTGAACGGTGCCATTGACCCCACGAATGTCACTCTCGCCTCCGGTGCCACCTGGAATATCCCCGATAACGc < 2:353924/139‑1 (MQ=255) cAGTACCGTCACCACGGATGTCATTGCTCAGCGCGGTACAGCCCTGAAGCCGACCGGCAGCACTGTGCTGAACGGTGCCATTGACCCCACGAATGTCACTCTCGCCTCCGGTGCCACCTGGAATATCCCCGATAACGcc < 2:1783158/139‑1 (MQ=255) aGTACCGTCACCACGGATGTCATTGCTCAGCGCGGTACAGCCCTGAAGCCGACCGGCAGCACTGTGCTGAACGGTGCCATTGACCCCACGAATGTCACTCTCGCCTCCGGTGCCACCTGGAATATCCCCGATAACGCCa < 2:260556/139‑1 (MQ=255) gTACCGTCACCACGGATGTCATTGCTCAGCGCGGTACAGCCCTGAAGCCGACCGGCAGCACTGTGCTGAACGGTGCCATTGACCCCACGAATGTCACTCTCGCCTCCGGTGCCACCTGGAATATCCCCGATAACGCCAc < 2:1462278/139‑1 (MQ=255) tACCGTCACCACGGATGTCATTGCTCAGCGCGGTACAGCCCTGAAGCCGACCgg < 1:69799/54‑1 (MQ=255) tACCGTCACCACGGATGTCATTGCTCAGCGCGGTACAGCCCTGAAGCCGACCgg > 2:69799/1‑54 (MQ=255) tACCGTCACCACGGATGTCATTGCTCAGCGCGGTACAGCCCTGAAGCCGACCGGCAGCACTGTGCTGAACGGTGCCATTGACCCCACGAATGTCACTCTCGCCTCCGGTGCCACCTGGAATATCCCCGATAACGCCACg < 2:1420746/139‑1 (MQ=255) cGTCACCACGGATGTCATTGCTCAGCGCGGTACAGCCCTGAAGCCGACCGGCAGCACTGTGCTGAACGGTGCCATTGACCCCACGAATGTCACTCTCGCCTCCGGTGCCACCTGGAATATCCCCGATAACGCCACGGTg < 2:1479577/139‑1 (MQ=255) cGTCACCACGGATGTCATTGCTCAGCGCGGTACAGCCCTGAAGCCGACCGGCAGCACTGTGCTGAACGGTGCCATTGACCCCACGAATGTCACTCTCGCCTCCGGTGCCACCTGGAATATCCCCGATAACGCCACGGTg < 1:1125874/139‑1 (MQ=255) tCACCACGGATGTCATTGCTCAGCGCGGTACAGCCCTGAAGCCGACCGGCAGCACTTTGCTGAACGGTGCCATTGACCCCACGAATGTCACTCTCGCCTCCGGTGCCACCTGGAATATCCCCGATAACGCCACGGTg < 1:1718156/137‑1 (MQ=255) tCACCACGGATGTCATTGCTCAGCGCGGTACAGCCCTGAAGCCGACCGGCAGCACTGTGCTGAACGGTGCCATTGACCCCACGAATGTCACTCTCGCCTCCGGTGCCACCTGGAATATCCCCGATAACGCCACGGTGCa > 2:349125/1‑139 (MQ=255) accacGGATGTCATTGCTCAGCGCGGTACAGCCCTGAAGCTGACCGGCAGCACTGTGCTGAACGGTGCCATTGACCCCACGAATGTCACTCTCGCCTCCGGTGCCACCTGGAATATCCCCGATAACGCCACGGTGCAGt < 1:1133003/139‑1 (MQ=255) accacGGATGTCATTGCTCAGCGCGGTACAGCCCTGAAGCCGACCGGCAGCACTGTGCTGAACGGTGCCATTGACCCCACGAATGTCACTCTCGCCTCCGGTGCCACCTGGAATATCCCCGATAACGCCACGGTGCAGt < 1:218476/139‑1 (MQ=255) acGGATGTCATTGCTCAGCGCGGTACAGCCCTGAAGCCGACCGGCAGCACTGTGCTGAACGGTGCCATTGACCCCACGAATGTCACTCTCGCCTCCGGTGCCACCTGGAATATCCCCGATAACGCCACGGTGCAGTCgg < 2:90710/139‑1 (MQ=255) cGGATGTCATTGCTCAGCGCGGTACAGCCCTGAAGCCGACCGGCAGCACTGTGCTGAACGGTGCCATTGACCCCACGAATGTCACTCTCGCCTCCGGTg > 1:770307/1‑99 (MQ=255) cGGATGTCATTGCTCAGCGCGGTACAGCCCTGAAGCCGACCGGCAGCACTGTGCTGAACGGTGCCATTGACCCCACGAATGTCACTCTCGCCTCCGGTg < 2:770307/99‑1 (MQ=255) ggATGTCATTGCTCAGCGCGGTACAGCCCTGAAGCCGACCGGCAGCACTGTGCTGAACGGTGCCATTGACCCCACGAATGTCACTCTCGCCTCCGGTg < 2:749435/98‑1 (MQ=255) ggATGTCATTGCTCAGCGCGGTACAGCCCTGAAGCCGACCGGCAGCACTGTGCTGAACGGTGCCATTGACCCCACGAATGTCACTCTCGCCTCCGGTg > 1:749435/1‑98 (MQ=255) aTGTCATTGCTCAGCGCGGTACAGCCCTGAAGCCGACCGGCAGCACTGTGCTGAACGGTGCCATTGACCCCACGAATGTCACTCTCGCCTCCGGTGCCACCTGGAATATCCCCGATAACGCCACGGTGCAGTCggtggt > 1:88968/1‑139 (MQ=255) tGTCATTGCTCAGCGCGGTACAGCCCTGAAGCCGACCGGCAGCACTGTGCTGAACGGTGCCATTGACCCCACGAATGTCACTCTCGCCTCCGGTGCCACCTGGAATATCCCCGATAACGCCACGGTGCAGTCGgtggtg > 2:287718/1‑139 (MQ=255) gTCATTGCTCAGCGCGGTACAGCCCTGAAGCCGACCGGCAGCACTGTGCTGAACGGTGCCATTGACCCCACGAATGTCACTCTCGCCTCCGGTGCCACCTGGAATATCCCCGATAACGCCACGGTGCAGTCGGtggtgg > 1:1597730/1‑139 (MQ=255) gTCATTGCTCAGCGCGGTACAGCCCTGAAGCCGACCGGCAGCACTGTGCTGAACGGTGCCATTGACCCCACGAATGTCACTCTCGCCTCCGGTGCCACCTGGAATATCCCCGATAACGCCACGGTGCAGTCGGtggtgg < 2:1493667/139‑1 (MQ=255) tCATTGCTCAGCGCGGTACAGCCCTGAAGCCGACCGGCAGCACTGTGCTGAACGGTGCCATTGACCCCACGAATGTCACTCTCGCCTCCGGTGCCACCTGGAATATCCCCGATAACGCCACGGTGCAGTCGGTGGTGGa < 1:335081/139‑1 (MQ=255) tCATTGCTCAGCGCGGTACAGCCCTGAAGCCGACCGGCAGCACTGTGCTGAACGGTGCCATTGACCCCACGAATGTCACTCTCGCCTCCGGTGCCACCTGGAATATCCCCGATAACGCCACGGTGCAGTCGGTGGTGGa < 1:138547/139‑1 (MQ=255) tCATTGCTCAGCGCGGTACAGCCCTGAAGCCGACCGGCAGCACTGTGCTGAACGGTGCCATTGACCCCACGAATGTCACTCTCGCCTCCGGTGCCACCTGGAATATCCCCGATAACGCCACGGTGCAGTCGGTGGTGGa < 1:917271/139‑1 (MQ=255) tCATTGCTCAGCGCGGTACAGCCCTGAAGCCGACCGGCAGCACTGTGCTGAACGGTGCCATTGACCCCACGAATGTCACTCTCGCCTCCGGTGCCACCTGGAATATCCCCGATAACGCCACGGTGCAGTCGGTGGTGGa < 2:1017337/139‑1 (MQ=255) cTCAGCGCGGTACAGCCCTGAAGCCGACCGGCAGCACTGTGCTGAACGGTGCCa > 2:1606577/1‑54 (MQ=255) cTCAGCGCGGTACAGCCCTGAAGCCGACCGGCAGCACTGTGCTGAACGGTGCCa < 1:1606577/54‑1 (MQ=255) tCAGCGCGGTACAGCCCTGAAGCCGACCGGCAGCACTGTGCTGAACGGTGCCATTGACCCCACGAATGTCACTCTCGCCTCCGGTGCCACCTGGAATATCCCCGATAACGCCACGGTGCAGTCggtg > 1:342500/1‑127 (MQ=255) aGCGCGGTACAGCCCTGAAGCCGACCGGCAGCACTGTGCTGAACGGTGCCATTGACCCCACGAATGTCACTCTCGCCTCCGGTg < 1:180516/84‑1 (MQ=255) gcgcGGTACAGCCCTGAAGCCGACCGGCAGCACTGTGCTGAACGGTGCCATTGACCCCACGAATGTCACTCTCGCCTCCGGTGCCACCTGGAATATCCCCGATAACGCCACGGTGCAGTCGGTGGTGGATGACCTCAGc < 1:199340/139‑1 (MQ=255) cgcgGTACAGCCCTGAAGCCGACCGGCAGCACTGTGCTGAACGGTGCCATTGACCCCACGAATGTCACTCTCGCCTCCGGt > 2:90154/1‑81 (MQ=255) cgcgGTACAGCCCTGAAGCCGACCGGCAGCACTGTGCTGAACGGTGCCATTGACCCCACGAATGTCACTCTCGCCTCCGGTGCCACCTGGAATATCCCCGATAACGCCACGGTGCAGTCGGTGGTGGATGACCTCAGcc > 1:650273/1‑139 (MQ=255) gcgGTACAGCCCTGAAGCCGACCGGCAGCACTGTGCTGAACGGTGCCATTGACCCCACGAATGTCACTCTCGCCt < 1:567764/75‑1 (MQ=255) gcgGTACAGCCCTGAAGCCGACCGGCAGCACTGTGCTGAACGGTGCCATTGACCCCACGAATGTCACTCTCGCCt > 2:567764/1‑75 (MQ=255) cgGTACAGCCCTGAAGCCGACCGGCAGCACTGTGCTGAACGGTGCCATTGACCCCACGAATGTCACTCTCGCCTCCGGTGCCACCTGGAATATCCCCGATAACGCCACGGTGCAGTCGGTGGTGGATGACCTCAGCCAt < 2:775602/139‑1 (MQ=255) ggTACAGCCCTGAAGCCGACCGGCAGCACTGTGCTGAACGGTGCCATTGACCCCACGAATGTCACTCTCGCCTCCGGTGCCACCTGGAATATCCCCGATAACGCCACGGTGCAGTCGGTGGTGGATGACCTCAGCCATg < 2:264208/139‑1 (MQ=255) aGCCCTGAAGCCGACCGGCAGCACTGTGCTGAACGGTGCCATTGACCCCACGAATGTCACTCTCGCCTCCGGTGCCACCTGGAATATCCCCGATAACGCCACGGTGCAGTCGGTGGTGGATGACCTCAGCCATGCCGGa < 2:1584603/139‑1 (MQ=255) aGCCCCGAAGCCGACCGGCAGCACTGTGCTGAACGGTGCCATTGACCCCACGAATGTCACTCTCGCCTCCAGTGCCACCTGGAATATCCCCGATAACGCCACGGTGCAGTCGGTGGTGGATGACCTCAGCCATGCCGGa < 2:1115652/139‑1 (MQ=255) cccTGAAGCCGACCGGCAGCACTGTGCTGAACGGTGCCATTGAc > 2:1638254/1‑44 (MQ=255) cccTGAAGCCGACCGGCAGCACTGTGCTGAACGGTGCCATTGAc < 1:1638254/44‑1 (MQ=255) cccTGAAGCCGACCGGCAGCACTGTGCTGAACGGTGCCATTGACCCCACGAATGTCACTCTCGCCTCCGGt > 1:594818/1‑71 (MQ=255) cccTGAAGCCGACCGGCAGCACTGTGCTGAACGGTGCCATTGACCCCACGAATGTCACTCTCGCCTCCGGt < 2:594818/71‑1 (MQ=255) ccTGAAGCCGACCGGCAGCACTGTGCTGAACGGTGCCATTGACCCCACGAATGTCACTCTCGCCTCCGGTGCCACCTGGAATATCCCCGATAACGCCACGGTGCAGTCGGTGGTGGATGACCTCAGCCATGCCGGACAg < 2:1379725/139‑1 (MQ=255) cTGAAGCCGACCGGCAGCACTGTGCTGAACGGTGCCATTGACCCCACGAATGTCACTCTCGCCTCCGGTGCCACCTGGAATATCCCCGATAACGCCACGGTGCAGTCGGTGGTGGATGACCTCAGCCATGCCGGACAGa < 2:712793/139‑1 (MQ=255) aaGCCGACCGGCAGCACTGTGCTGAACGGTGCCATTGACCCCACGAATGTCAct > 2:114103/1‑54 (MQ=255) aaGCCGACCGGCAGCACTGTGCTGAACGGTGCCATTGACCCCACGAATGTCAct < 1:114103/54‑1 (MQ=255) aaGCCGACCGGCAGCACTGTGCTGAACGGTGCCATTGACCCCACGAATGTCACTCTCGCCtt > 2:833078/1‑61 (MQ=255) aaGCCGACCGGCAGCACTGTGCTGAACGGTGCCATTGACCCCACGAATGTCACTCTCGCCTCCGGt > 1:176461/1‑66 (MQ=255) aaGCCGACCGGCAGCACTGTGCTGAACGGTGCCATTGACCCCACGAATGTCACTCTCGCCTCCGGt > 2:838464/1‑66 (MQ=255) aaGCCGACCGGCAGCACTGTGCTGAACGGTGCCATTGACCCCACGAATGTCACTCTCGCCTCCGGt < 1:838464/66‑1 (MQ=255) aaGCCGACCGGCAGCACTGTGCTGAACGGTGCCATTGACCCCACGAATGTCACTCTCGCCTCCGGt < 2:176461/66‑1 (MQ=255) aaGCCGACCGGCAGCACTGTGCTGAACGGTGCCATTGACCCCACGAATGTCACTCTCGCCTCCGGTGCCACCTGGAATATCCCCGATAACGCCACGGTGCAGTCGGTGGTGGATGACCTCAGCCATGCCGGACAGATTc > 2:327166/1‑139 (MQ=255) aaGCCGACCGGCAGCACTGTGCTGAACGGTGCCATTGACCCCACGAATGTCACTCTCGCCTCCGGTGCCACCTGGAATATCCCCGATAACGCCACGGTGCAGTCGGTGGTGGATGACCTCAGCCATGCCGGACAGATTc > 1:997722/1‑139 (MQ=255) | GAAGTGGCACACTCACTGTCAGCAACACCACACTCACCCAGAAAGCCGTCAACCTGAATGAAGGCACGCTGACGCTGAACGACAGTACCGTCACCACGGATGTCATTGCTCAGCGCGGTACAGCCCTGAAGCTGACCGGCAGCACTGTGCTGAACGGTGCCATTGACCCCACGAATGTCACTCTCGCCTCCGGTGCCACCTGGAATATCCCCGATAACGCCACGGTGCAGTCGGTGGTGGATGACCTCAGCCATGCCGGACAGATTC > NC_000913/2073025‑2073291 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |