| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 3,440,950 | G→A | T27I (ACC→ATC) | rpoA ← | RNA polymerase, alpha subunit |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,440,950 | 0 | G | A | 100.0% | 366.5 / NA | 114 | T27I (ACC→ATC) | rpoA | RNA polymerase, alpha subunit |
| Reads supporting (aligned to +/- strand): ref base G (0/0); new base A (57/57); total (57/57) | |||||||||||
Only 100 of 114 total aligned reads displayed.
GCTGTACTCATGTAGTACACCATCAATCTCAACCTCGGTCACCGCGCAACCCGGCATCGATGAGAGCAGAATACGGCGCAGTGCGTTACCCAGAGTATGGCCAAAGCCACG‑‑CTCTAAAGGCTCAAGGGTCACCTTGGCGTGCGTCGAACTCACTTGCTCGATATCAACCAGGCGCGGTTTTAGAAACTCTGTCACAGAACCCTGCATTGTGTCCTCTCTTTGGTACTAAGCTTTACTTGGAGTAAAGCTCGACGATCAGGT > NC_000913/3440823‑3441083 | gCTGTACTCATGTAGTACACCATCAATCTCAACCTCGGTCACCGCGCAACCCGGCATCGATGAGAGCAGAATACGGCGCAGTGCGTTACCCAGAGTATGGCCAAAGCCACG‑‑CTCTAAAGGCTCAAGGATCACCTTGgcg > 2:288590/1‑139 (MQ=255)gCTGTACTCATGTAGTACACCATCAATCTCAACCTCGGTCACCGCGCAACCCGGCATCGATGAGAGCAGAATACGGCGCAGTGCGTTACCCAGAGTATGGCCAAAGCCACG‑‑CTCTAAAGGCTCAAGGATCACCTTGgcg > 2:544262/1‑139 (MQ=255) cTGTACTCATGTAGTACACCATCAATCTCAACCTCGGTCACCGCGCAACCCGGCATCGATGAGAGCAGAATACGGCGCAGTGCGTTACCCAGAGTATGGCCAAAGCCACG‑‑CTCTAAAGGCTCAAGGATCACCTTGgcgt < 2:487282/139‑1 (MQ=255) gTACTCATGTAGTACACCATCAATCTCAACCTCGGTCACCGCGCAACCCGGCATCGATGAGAGCAGAATACGGCGCAGTGCGTTACCCAGAGTATGGCCAAAGCCACG‑‑CTCTAAAGGCTCAAGGATCACCTTGgcgtgc > 2:1619546/1‑139 (MQ=255) tACTCATGTAGTACACCATCAATCTCAACCTCGGTCACCGCGCAACCCGGCATCGATGAGAGCAGAATACGGCGCAGTGCGTTACCCAGAGTATGGCCAAAGCCACG‑‑CTCTAAAGGCTCAAGGATCACCTTGgcgtgcg > 1:4323/1‑139 (MQ=255) tACTCATGTAGTACACCATCAATCTCAACCTCGGTCACCGCGCAACCCGGCATCGATGAGAGCAGAATACGGCGCAGTGCGTTACCCAGAGTATGGCCAAAGCCACG‑‑CTCTAAAGGCTCAAGGATCACCTTGgcgtgcg > 1:1442077/1‑139 (MQ=255) cATGTAGTACACCATCAATCTCAACCTCGGTCACCGCGCAACCCGGCATCGATGAGAGCAGAATACGGCGCAGTGCGTTACCCAGAGTATGGCCAAAGCCACG‑‑CTCTAAAGGCTCAAGGATCACCTTGGCGTGCGTCGa < 1:1170214/139‑1 (MQ=255) gtagtaCACCATCAATCTCAACCTCGGTCACCGCGCAACCCGGCATCGATGAGAGCAGAATACGGCGCAGTGCGTTACCCAGAGTATGGCCAAAGCCACG‑‑CTCTAAAGGCTCAAGGATCACCTTGgcgtgcg < 1:1170034/132‑1 (MQ=255) gtagtaCACCATCAATCTCAACCTCGGTCACCGCGCAACCCGGCATCGATGAGAGCAGAATACGGCGCAGTGCGTTACCCAGAGTATGGCCAAAGCCACG‑‑CTCTAAAGGCTCAAGGATCACCTTGgcgtgcg > 2:1170034/1‑132 (MQ=255) gtagtaCACCATCAATCTCAACCTCGGTCACCGCGCAACCCGGCATCGATGAGAGCAGAATACGGCGCAGTGCGTTACCCAGAGTATGGCCAAAGCCACG‑‑CTCTAAAGGCTCAAGGATCACCTTGGCGTGCGTCGAACt > 1:750371/1‑139 (MQ=255) gtaCACCATCAATCTCAACCTCGGTCACCGCGCAACCCGGCATCGATGAGAGCAGAATACGGCGCAGTGCGTTACCCAGAGTATGGCCAAAGCCACG‑‑CTCTAAAGGCTCAAGGATCACCTTGGCGTGCGTCGAACTCAc > 2:911651/1‑139 (MQ=255) gtaCACCATCAATCTCAACCTCGGTCACCGCGCAACCCGGCATCGATGAGAGCAGAATACGGCGCAGTGCGTTACCCAGAGTATGGCCAAAGCCACG‑‑CTCTAAAGGCTCAAGGATCACCTTGGCGTGCGTCGAACTCAc > 1:865796/1‑139 (MQ=255) taCACCATCAATCTCAACCTCGGTCACCGCGCAACCCGGCATCGATGAGAGCAGAATACGGCGCAGTGCGTTACCCAGAGTATGGCCAAAGCCACG‑‑CTCTAAAGGCTCAAGGATCACCTTGgcgtgcg < 2:582262/128‑1 (MQ=255) taCACCATCAATCTCAACCTCGGTCACCGCGCAACCCGGCATCGATGAGAGCAGAATACGGCGCAGTGCGTTACCCAGAGTATGGCCAAAGCCACG‑‑CTCTAAAGGCTCAAGGATCACCTTGgcgtgcg > 1:582262/1‑128 (MQ=255) cacCATCAATCTCAACCTCGGTCACCGCGCAACCCGGCATCGATGAGAGCAGAATACGGCGCAGTGCGTTACCCAGAGTATGGCCAAAGCCACG‑‑CTCTAAAGGCTCAAGGATCACCTTGGCGTGCGTCGAACTCACTTg > 1:1151959/1‑139 (MQ=255) cacCATCAATCTCAACCTCGGTCACCGCGCAACCCGGCATCGATGAGAGCAGAATACGGCGCAGTGCGTTACCCAGAGTATGGCCAAAGCCACG‑‑CTCTAAAGGCTCAAGGATCACCTTGGCGTGCGTCGAACTCACTTg > 2:953266/1‑139 (MQ=255) ccATCAATCTCAACCTCGGTCACCGCGCAACCCGGCATCGATGAGAGCAGAATACGGCGCAGTGCGTTACCCAGAGTATGGCCAAAGCCACG‑‑CTCTAAAGGCTCAAGGATCACCTTGgcgt < 2:1283167/121‑1 (MQ=255) ccATCAATCTCAACCTCGGTCACCGCGCAACCCGGCATCGATGAGAGCAGAATACGGCGCAGTGCGTTACCCAGAGTATGGCCAAAGCCACG‑‑CTCTAAAGGCTCAAGGATCACCTTGGCGTGCGTCGAACTCACTTGCt < 1:288590/139‑1 (MQ=255) cATCAATCTCAACCTCGGTCACCGCGCAACCCGGCATCGATGAGAGCAGAATACGGCGCAGTGCGTTACCCAGAGTATGGCCAAAGCCACG‑‑CTCTAAAGGCTCAAGGATCACCTTGGCGTGCGTCGAACTCACTTGCTc > 1:209098/1‑139 (MQ=255) cATCAATCTCAACCTCGGTCACCGCGCAACCCGGCATCGATGAGAGCAGAATACGGCGCAGTGCGTTACCCAGAGTATGGCCAAAGCCACG‑‑CTCTAAAGGCTCAAGGATCACCTTGGCGTGCGTCGAACTCACTTGCTc > 2:1042281/1‑139 (MQ=255) aTCAATCTCAACCTCGGTCACCGCGCAACCCGGCATCGATGAGAGCAGAATACGGCGCAGTGCGTTACCCAGAGTATGGCCAAAGCCACG‑‑CTCTAAAGGCTCAAGGATCACCTTGGCGTGCGTCGAACTCACTTGCTCg > 2:730742/1‑139 (MQ=255) tCAATCTCAACCTCGGTCACCGCGCAACCCGGCATCGATGAGAGCAGAATACGGCGCAGTGCGTTACCCAGAGTATGGCCAAAGCCACG‑‑CTCTAAAGGCTCAAGGATCACCTTGgcgtgcg < 2:26614/121‑1 (MQ=255) tCAATCTCAACCTCGGTCACCGCGCAACCCGGCATCGATGAGAGCAGAATACGGCGCAGTGCGTTACCCAGAGTATGGCCAAAGCCACG‑‑CTCTAAAGGCTCAAGGATCACCTTGgcgtgcg > 1:26614/1‑121 (MQ=255) tCAATCTCAACCTCGGTCACCGCGCAACCCGGCATCGATGAGAGCAGAATACGGCGCAGTGCGTTACCCAGAGTATGGCCAAAGCCACG‑‑CTCTAAAGGCTCAAGGATCACCTTGGCGTGCGTCGAACTCACTTGCt < 1:1000494/136‑1 (MQ=255) tCAATCTCAACCTCGGTCACCGCGCAACCCGGCATCGATGAGAGCAGAATACGGCGCAGTGCGTTACCCAGAGTATGGCCAAAGCCACG‑‑CTCTAAAGGCTCAAGGATCACCTTGGCGTGCGTCGAACTCACTTGCTCGa > 2:1108977/1‑139 (MQ=255) aTCTCAACCTCGGTCACCGCGCAACCCGGCATCGATGAGAGCAGAATACGGCGCAGTGCGTTACCCAGAGTATGGCCAAAGCCACG‑‑CTCTAAAGGCTCAAGGATCACCTTGGCGTGCGTCGAACTCACTTGCTCGatat > 2:967029/1‑139 (MQ=255) aTCTCAACCTCGGTCACCGCGCAACCCGGCATCGATGAGAGCAGAATACGGCGCAGTGCGTTACCCAGAGTATGGCCAAAGCCACG‑‑CTCTAAAGGCTCAAGGATCACCTTGGCGTGCGTCGAACTCACTTGCTCGatat > 1:231938/1‑139 (MQ=255) aTCTCAACCTCGGTCACCGCGCAACCCGGCATCGATGAGAGCAGAATACGGCGCAGTGCGTTACCCAGAGTATGGCCAAAGCCACG‑‑CTCTAAAGGCTCAAGGATCACCTTGGCGTGCGTCGAACTCACTTGCTCGatat > 1:1570393/1‑139 (MQ=255) ccTCGGTCACCGCGCAACCCGGCATCGATGAGAGCAGAATACGGCGCAGTGCGTTACCCAGAGTATGGCCAAAGCCACG‑‑CTCTAAAGGCTCAAGGATCACCTTGGCGTGCGTCGAACTCACTTGCTCGata < 2:1645759/131‑1 (MQ=255) ccTCGGTCACCGCGCAACCCGGCATCGATGAGAGCAGAATACGGCGCAGTGCGTTACCCAGAGTATGGCCAAAGCCACG‑‑CTCTAAAGGCTCAAGGATCACCTTGGCGTGCGTCGAACTCACTTGCTCGata > 1:1645759/1‑131 (MQ=255) cTCGGTCACCGCGCAACCCGGCATCGATGAGAGCAGAATACGGCGCAGTGCGTTACCCAGAGTATGGCCAAAGCCACG‑‑CTCTAAAGGCTCAAGGATCACCTTGGCGTGCGTCGAACTCACTTGCTCGATATCAACCAgg < 1:953266/139‑1 (MQ=255) cGGTCACCGCGCAACCCGGCATCGATGAGAGCAGAATACGGCGCAGTGCGTTACCCAGAGTATGGCCAAAGCCACG‑‑CTCTAAAGGCTCAAGGATCACCTTGGCGTGCGTCGAACTCACTTGCTCGATATCAACCAGgcg < 2:923499/139‑1 (MQ=255) cGGTCACCGCGCAACCCGGCATCGATGAGAGCAGAATACGGCGCAGTGCGTTACCCAGAGTATGGCCAAAGCCACG‑‑CTCTAAAGGCTCAAGGATCACCTTGGCGTGCGTCGAACTCACTTGCTCGATATCAACCAGgcg < 1:967029/139‑1 (MQ=255) ggTCACCGCGCAACCCGGCATCGATGAGAGCAGAATACGGCGCAGTGCGTTACCCAGAGTATGGCCAAAGCCACG‑‑CTCTAAAGGCTCAAGGATCACCTTGGCGTGCGTCGAACTCACTTGCTCGATATCAACCAgg > 2:584428/1‑136 (MQ=255) ggTCACCGCGCAACCCGGCATCGATGAGAGCAGAATACGGCGCAGTGCGTTACCCAGAGTATGGCCAAAGCCACG‑‑CTCTAAAGGCTCAAGGATCACCTTGGCGTGCGTCGAACTCACTTGCTCGATATCAACCAgg < 1:584428/136‑1 (MQ=255) ggTCACCGCGCAACCCGGCATCGATGAGAGCAGAATACGGCGCAGTGCGTTACCCAGAGTATGGCCAAAGCCACG‑‑CTCTAAAGGCTCAAGGATCACCTTGGCGTGCGTCGAACTCACTTGCTCGATATCAACCAGgcgc > 2:593141/1‑139 (MQ=255) ggTCACCGCGCAACCCGGCATCGATGAGAGCAGAATACGGCGCAGTGCGTTACCCAGAGTATGGCCAAAGCCACG‑‑CTCTAAAGGCTCAAGGATCACCTTGGCGTGCGTCGAACTCACTTGCTCGATATCAACCAGgcgc > 2:1600943/1‑139 (MQ=255) ggTCACCGCGCAACCCGGCATCGATGAGAGCAGAATACGGCGCAGTGCGTTACCCAGAGTATGGCCAAAGCCACG‑‑CTCTAAAGGCTCAAGGATCACCTTGGCGTGCGTCGAACTCACTTGCTCGATATCAACCAGgcgc > 1:1291697/1‑139 (MQ=255) cACCGCGCAACCCGGCATCGATGAGAGCAGAATACGGCGCAGTGCGTTACCCAGAGTATGGCCAAAGCCACG‑‑CTCTAAAGGCTCAAGGATCACCTTGGCGTGCGTCGAACTCACTTGCTCGATATCAACCAGGCGCGGt < 1:364870/139‑1 (MQ=255) cgcgCAACCCGGCATCGATGAGAGCAGAATACGGCGCAGTGCGTTACCCAGAGTATGGCCAAAGCCACG‑‑CTCTAAAGGCTCAAGGATCACCTTGGCGTGCGTCGaa < 1:420197/106‑1 (MQ=255) cgcgCAACCCGGCATCGATGAGAGCAGAATACGGCGCAGTGCGTTACCCAGAGTATGGCCAAAGCCACG‑‑CTCTAAAGGCTCAAGGATCACCTTGGCGTGCGTCGaa > 2:420197/1‑106 (MQ=255) cgcgCAACCCGGCATCGATGAGAGCAGAATACGGCGCAGTGCGTTACCCAGAGTATGGCCAAAGCCACG‑‑CTCTAAAGGCTCAAGGATCACCTTGGCGTGCGTCGAACTCACTTGCTCGATATCAACCAGGCGCGGtttt > 1:727052/1‑139 (MQ=255) gcAACCCGGTATCGATGAGAGCAGAATACGGCGCTGTGCGTTACCCAGAGTATGGCCAAAGCCACG‑‑CTCTAAAGGCTCAAGGATCACCTTGGCGTGCGTCGAACTCACTTGCTCGATATCAACCAGGCGCGGTTTTAGa < 2:1151959/139‑1 (MQ=255) ggCATCGATGAGAGCAGAATACGGCGCAGTGCGTTACCCAGAGTATGGCCAAAGCCACG‑‑CTCTAAAGGCTCAAGGATCACCTTGGCGTGCGTCGAACTCACTTGCTCGATATCAACCAGGCGCGGTTTTAGAAActc < 1:890169/137‑1 (MQ=255) ggCATCGATGAGAGCAGAATACGGCGCAGTGCGTTACCCAGAGTATGGCCAAAGCCACG‑‑CTCTAAAGGCTCAAGGATCACCTTGGCGTGCGTCGAACTCACTTGCTCGATATCAACCAGGCGCGGTTTTAGAAActc > 2:890169/1‑137 (MQ=255) ggCATCGATGAGAGCAGAATACGGCGCAGTGCGTTACCCAGAGTATGGCCAAAGCCACG‑‑CTCTAAAGGCTCAAGGATCACCTTGGCGTGCGTCGAACTCACTTGCTCGATATCAACCAGGCGCGGTTTTAGAAACTCTg > 1:1290784/1‑139 (MQ=255) cGATGAGAGCAGAATACGGCGCAGTGCGTTACCCAGAGTATGGCCAAAGCCACG‑‑CTCTAAAGGCTCAAGGATCACCTTGGCGTGCGTCGAACTCACTTGCTCGATATCAACCAGGCGCGGTTTTAGAAACTCTGTcaca < 2:1389745/139‑1 (MQ=255) aTGAGAGCAGAATACGGCGCAGTGCGTTACCCAGAGTATGGCCAAAGCCACG‑‑CTCTAAAGGCTCAAGGATCACCTTGGCGTGCGTCGAACTCACTTGCTCGATATCAACCAGGCGCGGTTTTAGAAACTCTGTCACAGa > 2:1617807/1‑139 (MQ=255) aGAATACGGCGCAGTGCGTTACCCAGAGTATGGCCAAAGCCACG‑‑CTCTAAAGGCTCAAGGATCACCTTGGCGTGCGTCGAACTCACTTGCTCGATATCAACCAGGCGCGGTTTTAGAAACTCTGTCACAGAACCCTGCa < 1:1617807/139‑1 (MQ=255) ggCGCAGTGCGTTACCCAGAGTATGGCCAAAGCCACG‑‑CTCTAAAGGCTCAAGGATCACCTTGGCGTGCGTCGAACTCACTTGCTCGATATCAACCAGGCGCGGTTTTAGAAACTCTGTCACAGAACCCTGCATTGTGTc < 2:209098/139‑1 (MQ=255) cgcAGTGCGTTACCCAGAGTATGGCCAAAGCCACG‑‑CTCTAAAGGCTCAAGGATCACCTTGGCGTGCGTCGAACTCACTTGCTCGATATCAACCAGGCGCGGTTTTAGAAACTCTGTCACAGAACCCTGCATTGTGTCct < 1:1619546/139‑1 (MQ=255) cgcAGTGCGTTACCCAGAGTATGGCCAAAGCCACG‑‑CTCTAAAGGCTCAAGGATCACCTTGGCGTGCGTCGAACTCACTTGCTCGATATCAACCAGGCGCGGTTTTAGAAACTCTGTCACAGAACCCTGCATTGTGTCct > 2:201630/1‑139 (MQ=255) cgcAGTGCGTTACCCAGAGTATGGCCAAAGCCACG‑‑CTCTAAAGGCTCAAGGATCACCTTGGCGTGCGTCGAACTCACTTGCTCGATATCAACCAGGCGCGGTTTTAGAAACTCTGTCACAGAACCCTGCATTGTGTCct < 1:1600943/139‑1 (MQ=255) aGTGCGTTACCCAGAGTATGGCCAAAGCCACG‑‑CTCTAAAGGCTCAAGGATCACCTTGGCGTGCGTCGAACTCACTTGCTCGATATCAACCAGGCGCGGTTTTAGAAACTCTGTCACAGAACCCTGCATTGTGTCctctc > 1:1513313/1‑139 (MQ=255) aGTGCGTTACCCAGAGTATGGCCAAAGCCACG‑‑CTCTAAAGGCTCAAGGATCACCTTGGCGTGCGTCGAACTCACTTCCTCGATATCAACCAGGCGCGGTTTTAGAAACTCTGTCACAGAACCCTGCATTGTGTCctctc > 1:1284120/1‑139 (MQ=255) cGTTACCCAGAGTATGGCCAAAGCCACG‑‑CTCTAAAGGCTCAAGGATCACCTTGGCGTGCGTCGAACTCACTTGCTCGATATCAACCAGgcg < 1:707419/91‑1 (MQ=255) cGTTACCCAGAGTATGGCCAAAGCCACG‑‑CTCTAAAGGCTCAAGGATCACCTTGGCGTGCGTCGAACTCACTTGCTCGATATCAACCAGGCGCGGTTTTAGAAACTCTGTCACAGAACCCTGCATTGTGTCCTCTCTTTg < 2:231938/139‑1 (MQ=255) cGTTACCCAGAGTATGGCCAAAGCCACG‑‑CTCTAAAGGCTCAAGGATCACCTTGGCGTGCGTCGAACTCACTTGCTCGATATCAACCAGGCGCGGTTTTAGAAACTCTGTCACAGAACCCTGCATTGTGTCCTCTCTTTg < 2:727052/139‑1 (MQ=255) tACCCAGAGTATGGCCAAAGCCACG‑‑CTCTAAAGGCTCAAGGATCACCTTGGCGTGCGTCGTACTCACTTGCTCGATATCAACCAGGCGCGGTTTTAGAAACTCTGTCACAGAACCCTGCATTGTGTCCTCTCTTTGGTa < 2:1513313/139‑1 (MQ=255) tACCCAGAGTATGGCCAAAGCCACG‑‑CTCTAAAGGCTCAAGGATCACCTTGGCGTGCGTCGAACTCACTTGCTCGATATCAACCAGGCGCGGTTTTAGAAACTCTGTCACAGAACCCTGCATTGTGTCCTCTCTTTGGTa < 2:1284120/139‑1 (MQ=255) aCCCAGAGTATGGCCAAAGCCACG‑‑CTCTAAAGGCTCAAGGATCACCTTGGCGTGCGTCGAACTCACTTGCTCGATATCAACCAGGCGCGGTTTTAGAAACTCTGTCACAGAACCCTGCATTGTGTCCTCTCttttgcac < 1:1042281/139‑6 (MQ=255) aCCCAGAGTATGGCCAAAGCCACG‑‑CTCTAAAGGCTCAAGGATCACCTTGGCGTGCGTCGAACTCACTTGCTCGATATCAACCAGGCGCGGTTTTAGAAACTCTGTCACAGAACCCTGCATTGTGTCCTCTCTTTGGTAc < 2:1442077/139‑1 (MQ=255) aCCCAGAGTATGGCCAAAGCCACG‑‑CTCTAAAGGCTCAAGGATCACCTTGGCGTGCGTCGAACTCACTTGCTCGATATCAACCAGGCGCGGTTTTAGAAACTCTGTCACAGAACCCTGCATTGTGTCCTCTCTTTGGTAc < 1:361918/139‑1 (MQ=255) cccAGAGTATGGCCAAAGCCACG‑‑CTCTAAAGGCTCAAGGATCACCTTGGCGTGCGTCGAACTCACTTGCTCGATATCAACCAGGCGCGGTTTTAGAAACTCTGTCACAGAACCCTGCATTGTGTCCTCTCTTTGGTACt < 2:1291697/139‑1 (MQ=255) agagTATGGCCAAAGCCACG‑‑CTCTAAAGGCTCAAGGATCACCTTGGCGTGCGTCGAACTCACTTGCTCGata < 1:146480/72‑1 (MQ=255) agagTATGGCCAAAGCCACG‑‑CTCTAAAGGCTCAAGGATCACCTTGGCGTGCGTCGAACTCACTTGCTCGata > 2:146480/1‑72 (MQ=255) agTATGGCCAAAGCCACG‑‑CTCTAAAGGCTCAAGGATCACCTTGGCGTGCGTCGAACTCACTTGCTCGATATCAACCAGGCGCGGTTTTAGAAACTCTGTcaca < 2:281879/103‑1 (MQ=255) agTATGGCCAAAGCCACG‑‑CTCTAAAGGCTCAAGGATCACCTTGGCGTGCGTCGAACTCACTTGCTCGATATCAACCAGGCGCGGTTTTAGAAACTCTGTcaca > 1:281879/1‑103 (MQ=255) agTATGGCCAAAGCCACG‑‑CTCTAAAGGCTCAAGGATCACCTTGGCGTGCGTCGAACTCACTTGCTCGATATCAACCAGGCGCGGTTTTAGAAACTCTGTcaca > 1:1562411/1‑103 (MQ=255) agTATGGCCAAAGCCACG‑‑CTCTAAAGGCTCAAGGATCACCTTGGCGTGCGTCGAACTCACTTGCTCGATATCAACCAGGCGCGGTTTTAGAAACTCTGTCACAGAACCCTGCATTGTGTCCTCTCtt < 1:1108415/127‑1 (MQ=255) agTATGGCCAAAGCCACG‑‑CTCTAAAGGCTCAAGGATCACCTTGGCGTGCGTCGAACTCACTTGCTCGATATCAACCAGGCGCGGTTTTAGAAACTCTGTCACAGAACCCTGCATTGTGTCCTCTCtt > 2:1108415/1‑127 (MQ=255) agTATGGCCAAAGCCACG‑‑CTCTAAAGGCTCAAGGATCACCTTGGCGTGCGTCGAACTCACTTGCTCGATATCAACCAGGCGCGGTTTTAGAAACTCTGTCACAGAACCCTGCATTGTGTCCTCTCTTTGGTACTAAGCt > 2:772453/1‑139 (MQ=255) agTATGGCCAAAGCCACG‑‑CTCTAAAGGCTCAAGGATCACCTTGGCGTGCGTCGAACTCACTTGCTCGATATCAACCAGGCGCGGTTTTAGAAACTCTGTCACAGAACCCTGCATTGTGTCCTCTC‑TTGGTACTAAGCtt > 1:834544/1‑139 (MQ=255) tATGGCCAAAGCCACG‑‑CTCTAAAGGCTCAAGGATCACCTTGGCGTGCGTCGAACTCACTTGCTCGATATCAACCAGGCGCGGTTTTAGAAACTCTGTCACAGAACCCTGCATTGTGTCct < 1:1754732/120‑1 (MQ=255) tATGGCCAAAGCCACG‑‑CTCTAAAGGCTCAAGGATCACCTTGGCGTGCGTCGAACTCACTTGCTCGATATCAACCAGGCGCGGTTTTAGAAACTCTGTCACAGAACCCTGCATTGTGTCct > 2:1754732/1‑120 (MQ=255) ggCCAAAGCCACGCTCTCTAAAGGCTCAAGGATCACCTTGGCGTGCGTCGAACTCACTTGCTCGATATCAACCAGGCGCGGTTTTAGAAACTCTGTCACAGAACCCTGCATTGTGTCCTCTCTTTGGTACTAAGCTTTa > 1:1010093/1‑139 (MQ=255) ggCCAAAGCCACG‑‑CTCTAAAGGCTCAAGGATCACCTTGGCGTGCGTCGAACTCa < 1:1710319/54‑1 (MQ=255) ggCCAAAGCCACG‑‑CTCTAAAGGCTCAAGGATCACCTTGGCGTGCGTCGAACTCa > 2:1710319/1‑54 (MQ=255) ggCCAAAGCCACG‑‑CTCTAAAGGCTCAAGGATCACCTTGGCGTGCGTCGAACTCACTTGCt > 2:49129/1‑60 (MQ=255) ggCCAAAGCCACG‑‑CTCTAAAGGCTCAAGGATCACCTTGGCGTGCGTCGAACTCACTTGCt < 1:49129/60‑1 (MQ=255) ggCCAAAGCCACG‑‑CTCTAAAGGCTCAAGGATCACCTTGGCGTGCGTCGAACTCACTTGCTCGATATCAACCAGGCGCGGTTTTAGAAACTCTGTcaca > 2:1282896/1‑98 (MQ=255) ggCCAAAGCCACG‑‑CTCTAAAGGCTCAAGGATCACCTTGGCGTGCGTCGAACTCACTTGCTCGATATCAACCAGGCGCGGTTTTAGAAACTCTGTCACAGAACCCTGCATTGTGTCCTCTCTTTGGTACTAAGCTTTACt > 1:484835/1‑139 (MQ=255) ggCCAAAGCCACG‑‑CTCTAAAGGCTCAAGGATCACCTTGGCGTGCGTCGAACTCACTTGCTCGATATCAACCAGGCGCGGTTTTAGAAACTCTGTCACAGAACCCTGCATTGTGTCCTCTCTTTGGTACTAAGCTTTACt < 2:865796/139‑1 (MQ=255) ggCCAAAGCCACG‑‑CTCTAAAGCCTCAAGGATCACCTTGGCGTGCGTCGAACTCACTTGCTCGATATCAACCAGGCGCGGTTTTAGAAACTCTGTcaca < 1:1282896/98‑1 (MQ=255) gCCAAAGCCACG‑‑CTCTAAAGGCTCAAGGATCACCTTGGCGTGCGTCGAACTCACTTGCTCGATATCAACCAGGCGCGGTTTTAGAAACTCTGTCACAGAACCCTGCATTGTGTCCTCTCtt < 2:1738938/121‑1 (MQ=255) gCCAAAGCCACG‑‑CTCTAAAGGCTCAAGGATCACCTTGGCGTGCGTCGAACTCACTTGCTCGATATCAACCAGGCGCGGTTTTAGAAACTCTGTCACAGAACCCTGCATTGTGTCCTCTCtt > 1:1738938/1‑121 (MQ=255) aaGCCACG‑‑CTCTAAAGGCTCAAGGATCACCTTGgcgt > 2:526572/1‑37 (MQ=255) aaGCCACG‑‑CTCTAAAGGCTCAAGGATCACCTTGgcgt < 1:526572/37‑1 (MQ=255) aaGCCACG‑‑CTCTAAAGGCTCAAGGATCACCTTGGCGTGCGTCGAACTCa < 2:1543162/49‑1 (MQ=255) ctAAAGGCTCAAGGATCACCTTGGCGTGCGTCGAACTCACTTGCTCGATATCAACCAGGCGCGGTTTTAGAAACTCTGTCACAGAACCCTGCATTGTGTCCTCTCTTTGGTACTAAGCTTTACTTGGAGTAAAGCTcga < 2:750371/139‑1 (MQ=255) aaaGGCTTAAGGATCACCTTGGCGTGCGTCGAACTCACTTGCTCGATATCAACCAGGCGCGGTTTTAGAAACTCTGTCACAGAACCCTGCATTGTGTCCTCTCTTTGGTACTAAGCTTTACTTGGAGTAAAGCttagta < 1:911651/139‑6 (MQ=255) cTCAAGGATCACCTTGGCGTGCGTCGAACTCACTTGCt > 2:911855/1‑38 (MQ=255) cTCAAGGATCACCTTGGCGTGCGTCGAACTCACTTGCt < 1:911855/38‑1 (MQ=255) cAAGGATCACCTTGGCGTGCGTCGAACTCACTTGCt > 2:1295097/1‑36 (MQ=255) cAAGGATCACCTTGGCGTGCGTCGAACTCACTTGCt < 1:1295097/36‑1 (MQ=255) cAAGGATCACCTTGGCGTGCGTCGAACTCACTTGCTCGATATCAACCAGGCGCGGTTTTAGAAACTCTGTCACAGAACCCTGCATTGTGTCct > 2:797057/1‑93 (MQ=255) aGGATCACCTTGGCGTGCGTCGAACTCACTTGCTCGATATCAACCAGGCGCGGTTTTAGAAACTCTGTcaca < 2:776516/72‑1 (MQ=255) aGGATCACCTTGGCGTGCGTCGAACTCACTTGCTCGATATCAACCAGGCGCGGTTTTAGAAACTCTGTcaca > 1:776516/1‑72 (MQ=255) aGGATCACCTTGGCGTGCGTCGAACTCACTTGCTCGATATCAACCAGGCGCGGTTTTAGAAACTCTGTCACAGAACCCTGCATTGTGTCCTCTCTTTGGTACTAAGCTTTACTTGGAGTAAAGCtta > 2:738347/1‑125 (MQ=255) aGGATCACCTTGGCGTGCGTCGAACTCACTTGCTCGATATCAACCAGGCGCGGTTTTAGAAACTCTGTCACAGAACCCTGCATTGTGTCCTCTCTTTGGTACTAAGCTTTACTTGGAGTAAAGCtta < 1:738347/127‑3 (MQ=255) | GCTGTACTCATGTAGTACACCATCAATCTCAACCTCGGTCACCGCGCAACCCGGCATCGATGAGAGCAGAATACGGCGCAGTGCGTTACCCAGAGTATGGCCAAAGCCACG‑‑CTCTAAAGGCTCAAGGGTCACCTTGGCGTGCGTCGAACTCACTTGCTCGATATCAACCAGGCGCGGTTTTAGAAACTCTGTCACAGAACCCTGCATTGTGTCCTCTCTTTGGTACTAAGCTTTACTTGGAGTAAAGCTCGACGATCAGGT > NC_000913/3440823‑3441083 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |