| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 4,507,463 | G→A | intergenic (+12/+3) | insO → / ← insI1 | pseudogene, IS911 transposase B,IS, phage, Tn, Transposon‑related functions, extrachromosomal, transposon related/IS30 transposase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,507,463 | 0 | G | A | 98.6% | 213.6 / ‑3.7 | 69 | intergenic (+12/+3) | insO/insI1 | pseudogene, IS911 transposase B,IS, phage, Tn, Transposon‑related functions, extrachromosomal, transposon related/IS30 transposase |
| Reads supporting (aligned to +/- strand): ref base G (0/0); major base A (33/35); minor base T (0/1); total (33/36) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 5.40e-01 | |||||||||||
CTGCGTGATGAGCGTCAGGGCAAAACACCAAAAGCCTCTCCGATAACACCAGAACAAATCGAAATACGTAAGCTGAGGAAAAAGCTACAACGGATTGAAATGGAGAATGAAATATTAAAAAGGCTACTGTAGATTCAATCTGTCAATGCAACACCCCTTTCAATTATCTCTTTCGGTGTTTTGAACTTCAGTGTCTTTCTCGGTCTGTTGTTTAGCTGAGCAGCAACCAGATCTAGTTCATGTTGAGTATATTGGGCAAGACAT > NC_000913/4507332‑4507595 | cTGCGTGATGAGCGTCAGGGCAAAACACCAAAAGCCTCTCCGATAACACCAGAACAAATCGAAATACGTAAGCTGAGGAAAAAGCTACAACGGATTGAAATGGAGAATGAAATATTAAAAAGGCTACTGTAAATTCAAt < 1:444157/139‑1 (MQ=255)cTGCGTGATGAGCGTCAGGGCAAAACACCAAAAGCCTCTCCGATAACACCAGAACAAATCGAAATACGTAAGCTGAGGAAAAAGCTACAACGGATTGAAATGGAGAATGAAATATTAAAAAGGCTACTGTAAATTCAAt < 1:1256765/139‑1 (MQ=255) gCGTGATGAGCGTCAGGGCAAAACACCAAAAGCCTCTCCGATAACACCAGAACAAATCGAAATACGTAAGCTGAGGAAAAAGCTACAACGGATTGAAATGGAGAATGAAATATTAAAAAGGCTACTGTAAATTCAATCt > 1:898243/1‑139 (MQ=255) gaGCGTCAGGGCAAAACACCAAAAGCCTCTCCGATAACACCAGAACAAATCGAAATACGTAAGCTGAGGAAAAAGCTACAACGGATTGAAATGGAGAATGAAATATTAAAAAGGCTACTGTAAATTCAATCTGTCAATg < 1:1425618/139‑1 (MQ=255) cGTCAGGGCAAAACACCAAAAGCCTCTCCGATAACACCAGAACAAATCGAAATACGTAAGCTGAGGAAAAAGCTACAACGGATTGAAATGGAGAATGAAATATTAAAAAGGCTACTGTAAATTCAATCTGTCAATGCaa > 1:464687/1‑139 (MQ=255) tCAGGGCAAAACACCAAAAGCCTCTCCGATAACACCAGAACAAATCGAAATACGTAAGCTGAGGAAAAAGCTACAACGGATTGAAATGGAGAATGAAATATTAAAAAGGCTACTGTAAATTCAATCTGTCAATGCAaca < 2:464687/139‑1 (MQ=255) tCAGGGCAAAACACCAAAAGCCTCTCCGATAACACCAGAACAAATCGAAATACGTAAGCTGAGGAAAAAGCTACAACGGATTGAAATGGAGAATGAAATATTAAAAAGGCTACTGTAAATTCAATCTGTCAATGCAaca < 2:1110179/139‑1 (MQ=255) tCAGGGCAAAACACCAAAAGCCTCTCCGATAACACCAGAACAAATCGAAATACGTAAGCTGAGGAAAAAGCTACAACGGATTGAAATGGAGAATGAAATATTAAAAAGGCTACTGTAAATTCAATCTGTCAATGCAaca < 1:1613272/139‑1 (MQ=255) ggCAAAACACCAAAAGCCTCTCCGATAACACCAGAACAAATCGAAATACGTAAGCTGAGGAAAAAGCTACAACGGATTGAAATGGAGAATGAAATATTAAAAAGGCTACTGTAAATTCAATCTGTCAATGCAACAcccc > 1:1536652/1‑139 (MQ=255) gCAAAACACCAAAAGCCTCTCCGATAACACCAGAACAAATCGAAATACGTAAGCTGAGGAAAAAGCTACAACGGATTGAAATGGAGAATGAAATATTAAAAAGGCTACTGTAAATTCAATCTGTCAATGCAACACCCCt < 2:866059/139‑1 (MQ=255) tAACACCAGAACAAATCGAAATACGTAAGCTGAGGAAAAAGCTACAACGGATTGAAATGGAGAATGAAATATTAAAAAGGCTACTGTAAATTCAATCTGTCAATGCAACACCCCTTTCAATTATCTCTTTCGGTGtttt > 1:1786133/1‑139 (MQ=255) ccAGAACAAATCGAAATACGTAAGCTGAGGAAAAAGCTACAACGGATTGAAATGGAGAATGAAATATTAAAAAGGCTACTGTAAATTCAATCTGTCAATGCAACACCCCtt > 1:42948/1‑111 (MQ=255) ccAGAACAAATCGAAATACGTAAGCTGAGGAAAAAGCTACAACGGATTGAAATGGAGAATGAAATATTAAAAAGGCTACTGTAAATTCAATCTGTCAATGCAACACCCCtt < 2:42948/111‑1 (MQ=255) ccAGAACAAATCGAAATACGTAAGCTGAGGAAAAAGCTACAACGGATTGAAATGGAGAATGAAATATTAAAAAGGCTACTGTAAATTCAATCTGTCAATGCAACACCCCTTTCAATTATCTCttt < 2:166480/125‑1 (MQ=255) ccAGAACAAATCGAAATACGTAAGCTGAGGAAAAAGCTACAACGGATTGAAATGGAGAATGAAATATTAAAAAGGCTACTGTAAATTCAATCTGTCAATGCAACACCCCTTTCAATTATCTCttt > 1:166480/1‑125 (MQ=255) cAGAACAAATCGAAATACGTAAGCTGAGGAAAAAGCTACAACGGATTGAAATGGAGAATGAAATATTAAAAAGGCTACTGTAAATTCAATc < 2:213429/91‑1 (MQ=255) cAGAACAAATCGAAATACGTAAGCTGAGGAAAAAGCTACAACGGATTGAAATGGAGAATGAAATATTAAAAAGGCTACTGTAAATTCAATc > 1:213429/1‑91 (MQ=255) aaTCGAAATACGTAAGCTGAGGAAAAAGCTACAACGGATTGAAATGGAGAATGAAATATTAAAAAGGCTACTGTAAATTCAATCTGTCAATGCAACACCCCTTTCAATTATCTCTTTCGGTGTTTTGa > 2:1240883/1‑128 (MQ=255) aaTCGAAATACGTAAGCTGAGGAAAAAGCTACAACGGATTGAAATGGAGAATGAAATATTAAAAAGGCTACTGTAAATTCAATCTGTCAATGCAACACCCCTTTCAATTATCTCTTTCGGTGTTTTGa < 1:1240883/128‑1 (MQ=255) aTCGAAATACGTAAGCTGAGGAAAAAGCTACAACGGTTTGAAATGGATAATGAAATATTAAAACGGCTACTGTAAATTCAATCTGTCGATGCAACACCCCTTTCAATTATCTCTTTCGGTGTTTTGAACTTCAGTGTCt > 2:1142854/1‑139 (MQ=25) aTCGAAATACGTAAGCTGAGGAAAAAGCTACAACGGATTGAAATGGAGAATGAAATATTAAAAAGGCTACTGTAAATTCAATCTGTCAATGCAaca > 2:682991/1‑96 (MQ=255) aTCGAAATACGTAAGCTGAGGAAAAAGCTACAACGGATTGAAATGGAGAATGAAATATTAAAAAGGCTACTGTAAATTCAATCTGTCAATGCAaca < 1:682991/96‑1 (MQ=255) aTCGAAATACGTAAGCTGAGGAAAAAGCTACAACGGATTGAAATGGAGAATGAAATATTAAAAAGGCTACTGTAAATTCAATCTGTCAATGCAACACCCCt > 2:764560/1‑101 (MQ=255) aTCGAAATACGTAAGCTGAGGAAAAAGCTACAACGGATTGAAATGGAGAATGAAATATTAAAAAGGCTACTGTAAATTCAATCTGTCAATGCAACACCCCt < 1:764560/101‑1 (MQ=255) aTCGAAATACGTAAGCTGAGGAAAAAGCTACAACGGATTGAAATGGAGAATGAAATATTAAAAAGGCTACTGTAAATTCAATCTGTCAATGCAACACCCCTTTCAATTATCTCTTTCGGTGTTTTGAACTTCAGTGTCt > 1:262633/1‑139 (MQ=255) aaTACGTAAGCTGAGGAAAAAGCTACAACGGATTGAAATGGAGAATGAAATATTAAAAAGGCTACTGTAAATTCaa < 1:1691114/76‑1 (MQ=255) aaTACGTAAGCTGAGGAAAAAGCTACAACGGATTGAAATGGAGAATGAAATATTAAAAAGGCTACTGTAAATTCaa > 2:1691114/1‑76 (MQ=255) aaTACGTAAGCTGAGGAAAAAGCTACAACGGATTGAAATGGAGAATGAAATATTAAAAAGGCTACTGTAAATTCAATCTGTCAATGCAACACCCCTTTCAATTATCTCTTTCGGTGTTTTGAACTTCAGTGTCTTtctc > 1:1395037/1‑139 (MQ=255) aaTACGTAAGCTGAGGAAAAAGCTACAACGGATTGAAATGGAGAATGAAATATTAAAAAGGCTACTGTAAATTCAATCTGTCAATGCAACACCCCTTTCAATTATCTCTTTCGGTGTTTTGAACTTCAGTGTCTTtctc > 2:834331/1‑139 (MQ=255) aTACGTAAGCTGAGGAAAAAGCTACAACGGATTGAAATGGAGAATGAAATATTAAAAAGGCTACTGTAAATTCAATCTGTCAATGCAACACCCCTTTCAATTATCTCTTTCGGTGTTTTGAACTTCAGTGTCTTTCTCg < 2:513992/139‑1 (MQ=255) cGTAAGCTGAGGAAAAAGCTACAACGGATTGAAATGGAGAATGAAATATTAAAAAGGCTACTGTATATTCAATCTGTCAATGCAACACCCCTTTCAATTATCTCTTTCGGTGTTTTGAACTTCAGTGTCTTTCTCGGTc < 1:1451383/139‑1 (MQ=255) aGGAAAAAGCTACAACGGCTTGAAATGGAGAATGAAATATTAAAAAGGCTACTGTAAATTCAATCTGTCAATACAACACCCCTTTCAAtt < 1:1029430/90‑1 (MQ=21) aGGAAAAAGCTACAACGGATTGAAATGGAGAATGAAATATTAAAAAGGCTACTGTAAATTCAATCTGTCAATGCAACAcccc > 1:760797/1‑82 (MQ=255) aGGAAAAAGCTACAACGGATTGAAATGGAGAATGAAATATTAAAAAGGCTACTGTAAATTCAATCTGTCAATGCAACAcccc < 2:760797/82‑1 (MQ=255) aGGAAAAAGCTACAACGGATTGAAATGGAGAATGAAATATTAAAAAGGCTACTGTAAATTCAATCTGTCAATGCAACACCCCTTTCAAtt > 2:1029430/1‑90 (MQ=255) aGGAAAAAGCTACAACGGATTGAAATGGAGAATGAAATATTAAAAAGGCTACTGTAAATTCAATCTGTCAATGCAACACCCCTTTCAATTATCTCTTTCGGTGTTTTGAACTTc < 1:1111613/114‑1 (MQ=255) aGGAAAAAGCTACAACGGATTGAAATGGAGAATGAAATATTAAAAAGGCTACTGTAAATTCAATCTGTCAATGCAACACCCCTTTCAATTATCTCTTTCGGTGTTTTGAACTTc > 2:1111613/1‑114 (MQ=255) aGGAAAAAGCTACAACGGATTGAAATGGAGAATGAAATATTAAAAAGGCTACTGTAAATTCAATCTGTCAATGCAACACCCCTTTCAATTATCTCTTTCGGTGTTTTGAACTTCAGTGTCTTTCTCg < 2:1788967/127‑1 (MQ=255) aGGAAAAAGCTACAACGGATTGAAATGGAGAATGAAATATTAAAAAGGCTACTGTAAATTCAATCTGTCAATGCAACACCCCTTTCAATTATCTCTTTCGGTGTTTTGAACTTCAGTGTCTTTCTCg > 1:1788967/1‑127 (MQ=255) aGGAAAAAGCTACAACGGATTGAAATGGAGAATGAAATATTAAAAAGGCTACTGTAAATTCAATCTGTCAATGCAACACCCCTTTCAATTATCTCTTTCGGTGTTTTGAACTTCAGTGTCTTTCTCGGTCTGTTGTTTa > 1:1071558/1‑139 (MQ=255) aGGAAAAAGCTACAACGGATTGAAATGGAGAATGAAATATTAAAAAGGCTACTGTAAATTCAATCTGTCAATGCAACACCCCTTTCAATTATCTCTTTCGGTGTTTTGAACTTCAGTGTCTTTCTCGGTCTGTTGTTTa > 2:1552914/1‑139 (MQ=255) aGGAAAAAGCTACAACGGATTGAAATGGAGAATGAAATATTAAAAAGGCTACTGTAAATTCAATCTGTCAATGCAACACCCCTTTCAATTATCTCTTTCGGTGTTTTGAACTTCAGTGTCTTTCTCGGTCTGTTGTTTa > 2:1258791/1‑139 (MQ=255) aGGAAAAAGCTACAACGGATTGAAATGGAGAATGAAATATTAAAAAGGCTACTGTAAATTCAATCTGTCAATGCAACACCCCTTTCAATTATCTCTTTCGGTGTTTTGAACTTCAGTGTCTTTCTCGGTCTGTTGTTTa > 2:629633/1‑139 (MQ=255) ggAAAAAGCTACAACGGATTGAAATGGAGAATGAAATATTAAAAAGGCTACTGTAAATTCAATCTGTCAATGCAACACCCCTTTCAATTATCTCTTTCGGTGTTTTGAACTTCAGTGTCTTTCTCGGTCTGTTGTTTAg > 1:702272/1‑139 (MQ=255) aaaGCTACAACGGATTGAAATGGAGAATGAAATATTAAAAAGGCTACTGTAAATTCAATCTGTCAATGCAACACCCCTTTCAATTATCTCTTTCGGTGTTTTGAACTTCAGTGTCTTTCTCGGTCTGTTGTTTAGCTGa > 2:1022453/1‑139 (MQ=255) aGCTACAACGGATTGAAATGGAGAATGAAATATTAAAAAGGCTACTGTAAATTCAATCTGTCAATGCAACACCCCTTTCAATTATCTCTTTCGGTGTTTTGAACTTCAGTGTCTTTCTCGGTCTGTTGTTTAGCTGagc > 2:256224/1‑139 (MQ=255) cTACAACGGATTGAAATGGAGAATGATATATTAAAAAGGCTACTGTAAATTCAATCTGTCAATGCAACACCCCTTTCAATTATCTCTTTCGGTGTTTTGAACTTCAGTGTCTTTCTCGGTCTGTTGTTTAGCTGagcag < 1:1142854/139‑1 (MQ=255) aaCGGATTGAAATGGAGAATGAAATATTAAAAAGGCTACTGTAAATTCAATCTGTCAATGCAACACCCCTTTCAATTATCTCTTTCGGTGTTTTGAACTTCAGTGTCTTTCTCGGTCTGTTGTTTAGCTGAGCAGCAAc < 2:262633/139‑1 (MQ=255) aCGGATTGAAATGGAGAATGAAATATTAAAAAGGCTACTGTAAATTCAATCTGTCAATGCAACACCCCTTTCAATTATCTCTTTCGGTGTTTTGAACTTCAGTGTCTTTCTCGGTCTGTTGTTTAGCTGAGCAGCAAcc < 2:1536652/139‑1 (MQ=255) aTTGAAATGGAGAATGAAATATTAAAAAGGCTACTGTAAATTCAATCTGTCAATGCAACACCCCTTTCAATTATCTCTTTCg > 2:562194/1‑82 (MQ=255) aTTGAAATGGAGAATGAAATATTAAAAAGGCTACTGTAAATTCAATCTGTCAATGCAACACCCCTTTCAATTATCTCTTTCg < 1:562194/82‑1 (MQ=255) aTTGAAATGGAGAATGAAATATTAAAAAGGCTACTGTAAATTCAATCTGTCAATGCAACACCCCTTTCAATTATCTCTTTCGGTGTTTTGAACTTCAGTGTCTTTCTCGGTCTGTTGTTTAGCTGAGCAGCAACCAGAt > 2:1766282/1‑139 (MQ=255) aTTGAAATGGAGAATGAAATATTAAAAAGGCTACTGTAAATTCAATCTGTCAATGCAACACCCCTTTCAATTATCTCTTTCGGTGTTTTGAACTTCAGTGTCTTTCTCGGTCTGTTGTTTAGCTGAGCAGCAACCAGAt < 2:1071558/139‑1 (MQ=255) gagaATGAAATATTAAAAAGGCTACTGTAAATTCAATCTGTCAATGCAACACCCCTTTCAATTATCTCTTTCGGTGTTTTGAACTTCa < 1:1428948/88‑1 (MQ=255) gagaATGAAATATTAAAAAGGCTACTGTAAATTCAATCTGTCAATGCAACACCCCTTTCAATTATCTCTTTCGGTGTTTTGAACTTCa > 2:1428948/1‑88 (MQ=255) gagaATGAAATATTAAAAAGGCTACTGTAAATTCAATCTGTCAATGCAACACCCCTTTCAATTATCTCTTTCGGTGTTTTGAACTTCAGTGTCTTTCTCGGTCTGTTGTTTAGCTGAGCAGCAACCAGATCTAGTTCAt < 1:227609/139‑1 (MQ=255) gagaATGAAATATTAAAAAGGCTACTGTAAATTCAATCTGTCAATGCAACACCCCTTTCAATTATCTCTTTCGGTGTTTTGAACTTCAGTGTCTTTCTCGGTCTGTTGTTTAGCTGAGCAGCAACCAGATCTAGTTCAt < 1:1766282/139‑1 (MQ=255) agaATGAAATATTCAAAAGGCTACTGTAAATTCAATCTGTCAATGCAACACCCCt < 1:1106291/55‑1 (MQ=21) agaATGAAATATTAAAAAGGCTACTGTAAATTCAATCTGTCAATGCAACACCCCt > 2:1106291/1‑55 (MQ=255) gaATGAAATATTAAAAAGGCTACTGTAAATTCAATCTGTCAATGCAACACCCCTTTCAATTATCTCTTTCGGTGTTTTGAACTTCAGTGTCTTTCTCGGTCTGTTGTTTAGCTGAGCAGCAACCAGATCTAGTTCATGt < 1:1552914/139‑1 (MQ=255) aaTGAAATATTAAAAAGGCTACTGTAAATTCAATCTGTCAATGCAACACCCCTTTCAATTATCTCTTTCGGTGTTTTGAACTTCAGTGTCTTTCTCGGTCTGTTGTTTAGCTGAGCAGCAACCAGATCTAGTTCATGtt < 2:1395037/139‑1 (MQ=255) aaTGAAATATTAAAAAGGCTACTGTAAATTCAATCTGTCAATGCAACACCCCTTTCAATTATCTCTTTCGGTGTTTTGAACTTCAGTGTCTTTCTCGGTCTGTTGTTTAGCTGAGCAGCAACCAGATCTAGTTCATGtt < 1:1258791/139‑1 (MQ=255) tGAAATATTAAAAAGGCTACTGTAAATTCAATCTGTCAATGCAACACCCCTTTCAATTATCTCTTTCGGTGTTTTGAACTTCAGTGTCTTTCTCGGTCTGTTGTTTAGCTGAGCAGCAACCAGATCTAGTTCATg < 1:636888/135‑1 (MQ=255) tGAAATATTAAAAAGGCTACTGTAAATTCAATCTGTCAATGCAACACCCCTTTCAATTATCTCTTTCGGTGTTTTGAACTTCAGTGTCTTTCTCGGTCTGTTGTTTAGCTGAGCAGCAACCAGATCTAGTTCATg > 2:636888/1‑135 (MQ=255) tAAAAAGGCTACTGTAAATTCAATCTGTCAATGCAACACCCCTTTCAATTATCTCTTTCGGTGTTTTGAACTTCAGTGTCTTTCTCGGTCTGTTGTTTAGCTGAGCAGCAACCAGATCTAGTTCATGTTGa > 2:571233/1‑131 (MQ=25) tAAAAAGGCTACTGTAAATTCAATCTGTCAATGCAACACCCCTTTCAATTATCTCTTTCGGTGTTTTGAACTTCAGTGTCTTTCTCGGTCTGTTGTTTAGCTGAGCAGCAACCAGATCTAGTTCATGTTGa < 1:571233/131‑1 (MQ=37) tAAAAAGGCTACTGTAAATTCAATCTGTCAATGCAACACCCCTTTCAATTATCTCTTTCGGTGTTTTGAACTTCAGTGTCTTTCTCGGTCTGTTGTTTAGCTGAGCAGCAACCAGATCTAGTTAATGTAGAGCATATTg > 1:1334414/1‑139 (MQ=255) aCTGTAAATTCAATCTGTCAATGCAACACCCCTTTCAATTATCTCTTTCGGTGTTTTGAACTTCAGTGTCTTTCTCGGTCTGTTGTTTAGCTGAGCAGCAACCAGATCTAGTTCATGTTGAGTATATTGGGCAAGACAt < 2:183818/139‑1 (MQ=11) aCTGTAAATTCAATCTGTCAATGCAACACCCCTTTCAATTATCTCTTTCGGTGTTTTGAACTTCAGTGTCTTTCTCGGTCTGTTGTTTAGCTGAGCAGCAACCAGATCTAGTTCATGTTGAGTATATTGGGCAAGACAt < 2:1786133/139‑1 (MQ=11) | CTGCGTGATGAGCGTCAGGGCAAAACACCAAAAGCCTCTCCGATAACACCAGAACAAATCGAAATACGTAAGCTGAGGAAAAAGCTACAACGGATTGAAATGGAGAATGAAATATTAAAAAGGCTACTGTAGATTCAATCTGTCAATGCAACACCCCTTTCAATTATCTCTTTCGGTGTTTTGAACTTCAGTGTCTTTCTCGGTCTGTTGTTTAGCTGAGCAGCAACCAGATCTAGTTCATGTTGAGTATATTGGGCAAGACAT > NC_000913/4507332‑4507595 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |