| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 1,004,160 | (G)7→6 | coding (214/711 nt) | ycbF → | putative periplasmic pilin chaperone |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,004,154 | 0 | G | . | 100.0% | 269.2 / NA | 66 | coding (208/711 nt) | ycbF | putative periplasmic pilin chaperone |
| Reads supporting (aligned to +/- strand): ref base G (0/0); new base . (32/34); total (32/34) | |||||||||||
AGGCAGGAGTGGTGGTCGGCGGAACGCGATTTATCTTTCCGGCAGACAGAGAATCGATATCTATTTTACTGACTAATACCAGTCAGGAATCCTGGCTTATTAACAGTAAAATCAACCGCCCAACGCGTTGGGCCGGGGGGGAAGCGTCGACAGTGCCAGCACCATTACTGGCCGCTCCGCCACTTATTCTCCTGAAGCCCGGTACGACAGGCACGTTGCGCTTGCTGAGAACGGAAAGCGACATCTTGCCTGTGGATCGCGAAAC > NC_000913/1004020‑1004284 | aggcaggAGTGGTGGTCGGCGGAACGCGATTTATCTTTCCGGCAGACAGAGAATCGATATCTATTTTACTGACTAATACCAGTCAGGAATCCTGGCTTATTAACAGTAAAATCAACCGCCCAACGCGTTGGGCCggggg < 1:168065/139‑1 (MQ=255) gAGTGGTGGTCGGCGGAACACGATTTATCTTTCCGGCAGACAGAGAATCGATATCTATTTTACTGACTAATACCAGTCAGGAATCCTGGCTTATTAACAGTAAAATCAACCGCCCAACGCGTTGGGCC‑GGGGGGAAGCg < 2:1641350/139‑1 (MQ=255) cggcggAACGCGATTTATCTTTCCGGCAGACAGAGAATCGATATCTATTTTACTGACTAATACCAGTCAGGAATCCTGGCTTATTAACAGTAAAATCAACCGCCCAACGCGTTGGGCCggggg < 2:1482393/123‑1 (MQ=255) cggcggAACGCGATTTATCTTTCCGGCAGACAGAGAATCGATATCTATTTTACTGACTAATACCAGTCAGGAATCCTGGCTTATTAACAGTAAAATCAACCGCCCAACGCGTTGGGCCggggg > 1:1482393/1‑123 (MQ=255) cggcggAACGCGATTTATCTTTCCGGCAGACAGAGAATCGATATCTATTTTACTGACTAATACCAGTCAGGAATCCTGGCTTATTAACAGTAAAATCAACCGCCCAACGCGTTGGGCC‑GGGGGGAAGCGTCGACAGTGc > 2:1407399/1‑139 (MQ=255) ggcggAACGCGATTTATCTTTCCGGCAGACAGAGAATCGATATCTATTTTACTGACTAATACCAGTCAGGAATCCTGGCTTATTAACAGTAAAATCAACCGCCCAACGCGTTGGGCCagggg > 2:968472/1‑122 (MQ=255) ggcggAACGCGATTTATCTTTCCGGCAGACAGAGAATCGATATCTATTTTACTGACTAATACCAGTCAGGAATCCTGGCTTATTAACAGTAAAATCAACCGCCCAACGCGTTGGGCCagggg < 1:968472/122‑1 (MQ=255) ggcggAACGCGATTTATCTTTCCGGCAGACAGAGAATCGATATCTATTTTACTGACTAATACCAGTCAGGAATCCTGGCTTATTAACAGTAAAATCAACCGCCCAACGCGTTGGGCC‑GGGGGGAAGCGTCGACAGTGcc < 2:1481117/139‑1 (MQ=255) cggAACGCGATTTATCTTTCCGGCAGACAGAGAATCGATATCTATTTTACTGACTAATACCAGTCAGGAATCCTGGCTTATTAACAGTAAAATCAACCGCCCAACGCGTTGGGCC‑GGGGGGAAGCGTCGACAGTGCCAg > 2:325745/1‑139 (MQ=255) cggAACGCGATTTATCTTTCCGGCAGACAGAGAATCGATATCTATTTTACTGACTAATACCAGTCAGGAATCCTGGCTTATTAACAGTAAAATCAACCGCCCAACGCGTTGGGCC‑GGGGGGAAGCGTCGACAGTGCCAg > 2:352177/1‑139 (MQ=255) cggAACGCGATTTATCTTTCCGGCAGACAGAGAATCGATATCTATTTTACTGACTAATACCAGTCAGGAATCCTGGCTTATTAACAGTAAAATCAACCGCCCAACGCGTTGGGCC‑GGGGGGAAGCGTCGACAGTGCCAg < 2:168345/139‑1 (MQ=255) cggAACGCGATTTATCTTTCCGGCAGACAGAGAATCGATATCTATTTTACTGACTAATACCAGTCAGGAATCCTGGCTTATTAACAGTAAAATCAACCGCCCAACGCGTTGGGCC‑GGGGGGAAGCGTCGACAGTGCCAg > 2:736661/1‑139 (MQ=255) ccGGCAGACAGAGAATCGATATCTATTTTACTGACTAATACCAGTCAGGAATCCTGGCTTATTAACAGTAAAATCAACCGCCCAACGCGTTGGGCC‑GGGGGGAAGCGTCGACAGTGCCAGCACCATTACTGGCCGCTcc < 1:325745/139‑1 (MQ=255) ccGGCAGACAGAGAATCGATATCTATTTTACTGACTAATACCAGTCAGGAATCCTGGCTTATTAACAGTAAAATCAACCGCCCAACGCGTTGGGCC‑GGGGGGAAGCGTCGACAGTGCCAGCACCATTACTGGCCGCTcc < 1:736661/139‑1 (MQ=255) acagaATCGATATCTATTTTACTGACTAATACCAGTCAGGAATCCTGGCTTATTAACAGTAAAATCAACCGCCCAACGCGTTGGGCC‑GGGGGGAAGCGTCGACAGTGCCa > 2:569972/3‑110 (MQ=255) acagaATCGATATCTATTTTACTGACTAATACCAGTCAGGAATCCTGGCTTATTAACAGTAAAATCAACCGCCCAACGCGTTGGGCC‑GGGGGGAAGCGTCGACAGTGCCa < 1:569972/108‑1 (MQ=255) aTCGATATCTATTTTACTGACTAATACCAGTCAGGAATCCTGGCTTATTAACAGTAAAATCAACCGCCCAACGCGTTGGGCC‑GGGGGGAAGCGTCGACAGTGCCAGCACCATTACTGGCCGCTCCGCCACTTATTCTcc < 2:734030/139‑1 (MQ=255) cGATATCTATTTTACTGACTAATACCAGTCAGGAATCCTGGCTTATTAACAGTAAAATCAACCGCCCAACGCGTTGGGCC‑GGGGGGAAGCGTCGACAGTGCCAGCACCATTACTGGCCGCTCCGCCACTTATTCTCCTg < 1:417354/139‑1 (MQ=255) atatCTATTTTACTGACTAATACCAGTCAGGAATCCTGGCTTATTAACAGTAAAATCAACCGCCCAACGCGTTGGGCC‑GGGGGGAAGCGTCGACAGTGCCAGCACCATTACTGGCCGCTCCGCCACTTATTCTCCTGaa > 1:471288/1‑139 (MQ=255) tatCTATTTTACTGACTAATACCAGTCAGGAATCCTGGCTTATTAACAGTAAAATCAACCGCCCAACGCGTTGGGCC‑GGGGGGAAGCGTCGACAGTGCCAGCACCATTACTGGCCGCTCCGCCACTTATTCTCCTGAAg < 1:352177/139‑1 (MQ=255) aCTAATACCAGTCAGGAATCCTGGCTTATTAACAGTAAAATCAACCGCCCAACGCGTTGGGCC‑GGGGGGAAGCGTCGa > 1:399239/1‑78 (MQ=255) aCTAATACCAGTCAGGAATCCTGGCTTATTAACAGTAAAATCAACCGCCCAACGCGTTGGGCC‑GGGGGGAAGCGTCGa < 2:399239/78‑1 (MQ=255) tAATACCAGTCAGGAATCCTGGCTTATTAACAGTAAAATCAACCGCCCAACGCGTTGGGCC‑GGGGGGAAGCGTCGACAGTGCCAGCACCATTACTGGCCGCTCCGCCACTTATTCTCCTg < 2:363584/120‑1 (MQ=255) tAATACCAGTCAGGAATCCTGGCTTATTAACAGTAAAATCAACCGCCCAACGCGTTGGGCC‑GGGGGGAAGCGTCGACAGTGCCAGCACCATTACTGGCCGCTCCGCCACTTATTCTCCTg > 1:363584/1‑120 (MQ=255) tACCAGTCAGGAATCCTGGCTTATTAACAGTAAAATCAACCGCCCAACGCGTTGGGCC‑GGGGGGAAGCGTCGACAGTGCCAGCACCATTACTGGCCGCTCCGCCACTTATTCTCCTGAAGCCCGGTACGACAGGCACGt > 2:717530/1‑139 (MQ=255) ccAGTCAGGAATCCTGGCTTATTAACAGTAAAATCAACCGCCCAACGCGTTGGGCC‑GGGGGGAAGCGTCGACAGTGCCAGCACCATTACTGGCCGCTCCGCCACTTATTCTCCTGAAGCCCGGTACGACAGGCACGTTg < 1:276796/139‑1 (MQ=255) gTCAGGAATCCTGGCTTATTAACAGTAAAATCAACCGCCCAACGCGTTGGGCC‑GGGGGGAAGCGTCGACa < 1:900898/70‑1 (MQ=255) gTCAGGAATCCTGGCTTATTAACAGTAAAATCAACCGCCCAACGCGTTGGGCC‑GGGGGGAAGCGTCGACa > 2:900898/1‑70 (MQ=255) gTCAGGAATCCTGGCTTATTAACAGTAAAATCAACCGCCCAACGCGTTGGGCC‑GGGGGGAAGCGTCGACAGTGCCAGCACCATTACTGGCCGCTCCGcc > 1:563767/1‑99 (MQ=255) gTCAGGAATCCTGGCTTATTAACAGTAAAATCAACCGCCCAACGCGTTGGGCC‑GGGGGGAAGCGTCGACAGTGCCAGCACCATTACTGGCCGCTCCGcc < 2:563767/99‑1 (MQ=255) gTCAGGAATCCTGGCTTATTAACAGTAAAATCAACCGCCCAACGCGTTGGGCC‑GGGGGGAAGCGTCGACAGTGCCAGCACCATTACTGGCCGCTCCGc > 1:409376/1‑98 (MQ=255) gTCAGGAATCCTGGCTTATTAACAGTAAAATCAACCGCCCAACGCGTTGGGCC‑GGGGGGAAGCGTCGACAGTGCCAGCACCATTACTGGCCGCTCCGCCACTTATTCTCCTGAAg > 1:1430771/1‑115 (MQ=255) gTCAGGAATCCTGGCTTATTAACAGTAAAATCAACCGCCCAACGCGTTGGGCC‑GGGGGGAAGCGTCGACAGTGCCAGCACCATTACTGGCCGCTCCGCCACTTATTCTCCTGAAg < 2:1430771/115‑1 (MQ=255) gTCAGGAATCCTGGCTTATTAACAGTAAAATCAACCGCCCAACGCGTTGGGCC‑GGGGGGAAGCGTCGACAGTGCCAGCACCATTACTGGCCGCTCCGCCACTTATTCTCCTGAAGCCCGGTACGACAGGCACGTTgcgc > 1:175560/1‑139 (MQ=255) gTCAGGAATCCTGGCTTATTAACAGTAAAATCAACCGCCCAACGCGTTGGGCC‑GGGGGGAAGCATCGACAGTGCCAGCACCATTACTGGCCGCTCCGc < 2:409376/98‑1 (MQ=255) tCAGGAATCCTGGCTTATTAACAGTAAAATCAACCGCCCAACGCGTTGGGCC‑GGGGGGAAGCGTCGACAGTGCCAGCACCATTACTGGCCGCTCCGCCACTTATTCTCCTGAAGCCCGGTACGACAGGCACGTTGCGCt > 2:616470/1‑139 (MQ=255) tCCTGGCTTATTAACAGTAAAATCAACCGCCCAACGCGTTGGGCC‑GGGGGGAAGCGTCGACAGTGcc > 2:897101/1‑67 (MQ=255) tCCTGGCTTATTAACAGTAAAATCAACCGCCCAACGCGTTGGGCC‑GGGGGGAAGCGTCGACAGTGcc < 1:897101/67‑1 (MQ=255) tGGCTTATTAACAGTAAAATCAACCGCCCAACGCGTTGGGCC‑GGGGGGAAGCGTCGACAGTGcc < 1:806563/64‑1 (MQ=255) tGGCTTATTAACAGTAAAATCAACCGCCCAACGCGTTGGGCC‑GGGGGGAAGCGTCGACAGTGcc > 2:806563/1‑64 (MQ=255) tGGCTTATTAACAGTAAAATCAACCGCCCAACGCGTTGGGCC‑GGGGGGAAGCGTCGACAGTGCCAg > 2:1156944/1‑66 (MQ=255) tGGCTTATTAACAGTAAAATCAACCGCCCAACGCGTTGGGCC‑GGGGGGAAGCGTCGACAGTGCCAg < 1:1156944/66‑1 (MQ=255) tGGCTTATTAACAGTAAAATCAACCGCCCAACGCGTTGGGCC‑GGGGGGAAGCGTCGACAGTGCCAGCACCATTACTGGCCGCTCCGCCACTTATTCTCCTGAAGCCCGGTACGACAGGCACGTTgcgc > 2:943543/1‑128 (MQ=255) tGGCTTATTAACAGTAAAATCAACCGCCCAACGCGTTGGGCC‑GGGGGGAAGCGTCGACAGTGCCAGCACCATTACTGGCCGCTCCGCCACTTATTCTCCTGAAGCCCGGTACGACAGGCACGTTgcgc < 1:943543/128‑1 (MQ=255) tGGCTTATTAACAGTAAAATCAACCGCCCAACGCGTTGGGCC‑GGGGGGAAGCGTCGACAGTGCCAGCACCATTACTGGCCGCTCCGCCACTTATTCTCCTGAAGCCCGGTACGACAGGCACGTTGCGCTTGCTGAGAAc > 2:1227109/1‑139 (MQ=255) ttaACAGTAAAATCAACCGCCCAACGCGTTGGGCCggggg < 2:665998/40‑1 (MQ=255) ttaACAGTAAAATCAACCGCCCAACGCGTTGGGCCggggg > 1:665998/1‑40 (MQ=255) ttaACAGTAAAATCAACCGCCCAACGCGTTGGGCC‑GGGGGGAAGCGTCGACAGTGCCAGCACCATTACTGGCCGCTCCg > 2:1125509/1‑79 (MQ=255) ttaACAGTAAAATCAACCGCCCAACGCGTTGGGCC‑GGGGGGAAGCGTCGACAGTGCCAGCACCATTACTGGCCGCTCCg < 1:1125509/79‑1 (MQ=255) ttaACAGTAAAATCAACCGCCCAACGCGTTGGGCC‑GGGGGGAAGCGTCGACAGTGCCAGCACCATTACTGGCCGCTCCGCCACTTATTCTCCTGAAGCCCGGTACGa < 2:904430/107‑1 (MQ=255) ttaACAGTAAAATCAACCGCCCAACGCGTTGGGCC‑GGGGGGAAGCGTCGACAGTGCCAGCACCATTACTGGCCGCTCCGCCACTTATTCTCCTGAAGCCCGGTACGa > 1:904430/1‑107 (MQ=255) ttaACAGTAAAATCAACCGCCCAACGCGTTGGGCC‑GGGGGGAAGCGTCGACAGTGCCAGCACCATTACTGGCCGCTCCGCCACTTATTCTCCTGAAGCCCGGTACGACAGGCACGTTGCGCTTGCTGAGAACGGAAAGc > 2:408443/1‑139 (MQ=255) aGTAAAATCAACCGCCCAACGCGTTGGGCC‑GGGGGGAAGCGTCGACAGTGCCAg > 2:1124060/1‑54 (MQ=255) aGTAAAATCAACCGCCCAACGCGTTGGGCC‑GGGGGGAAGCGTCGACAGTGCCAGCACAATTACTGGCCGCTCCGCCACTTATTCTCCTGAAGCCCGGTACGACAGGCACGTTGCGCTTGCTGAGAACGGAAAGCGACAt > 1:888528/1‑139 (MQ=255) aGTAAAATCAACCGCCCAACGCGTTGGGCC‑GGGAGGAAGCGTCGACAGTGCCAg < 1:1124060/54‑1 (MQ=38) tAAAATCAACCGCCCAACGCGTTGGGCC‑GGGGGGAAGCGTCGACAGTGCCAGCACCATTACTGGCCGCt < 2:84342/69‑1 (MQ=255) tAAAATCAACCGCCCAACGCGTTGGGCC‑GGGGGGAAGCGTCGACAGTGCCAGCACCATTACTGGCCGCt > 1:84342/1‑69 (MQ=255) tAAAATCAACCGCCCAACGCGTTGGGCC‑GGGGGGAAGCGTCGACAGTGCCAGCACCATTACTGGCCGCTCCGCCACTTATTCTCCTGAAGCCCGGTACGACAGGCACGTTGCGCTTGCTGAGAACGGAAAGCGACATCt < 2:471288/139‑1 (MQ=255) tAAAATCAACCGCCCAACGCGTTGGGCC‑GGGGGGAAGCGTCGACAGTGCCAGCACCATTACTGGCCGCTCCGCCACTTATTCTCCTGAAGCCCGGTACGACAGGCACGTTGCGCTTGCTGAGAACGGAAAGCGACATCt < 1:616470/139‑1 (MQ=255) aaTCAACCGCCCAACGCGTTGGGCC‑GGGGGGAAGCGTCGACAGTGCCAGCACCATTACTGGCCGCTCCGCCACTTATTCTCCTGAAGCCCGGTACGACAGGCACGTTGCGCTTGCTGAGAACGGAAAGCGACAt > 1:777454/1‑134 (MQ=255) aaTCAACCGCCCAACGCGTTGGGCC‑GGGGGGAAGCGTCGACAGTGCCAGCACCATTACTGGCCGCTCCGCCACTTATTCTCCTGAAGCCCGGTACGACAGGCACGTTGCGCTTGCTGAGAACGGAAAGCGACAt < 2:777454/134‑1 (MQ=255) cccAACGCGTTGGGCC‑GGGGGGAAGCGTCGACAGTGCCAGCa > 1:1544730/1‑42 (MQ=38) cccAACGCGTTGGGCC‑GGGGGGAAGCGTCGACAGTGCCAGCa < 2:1544730/42‑1 (MQ=38) cccAACGCGTTGGGCC‑GGGGGGAAGCGTCGACAGTGCCAGCACCATTACTGGCCGCTCCGCCACTTATTCTCCTGAAGCCCGGTACGACAGGCACGTTGCGCTTGCTGAGAACGGAAAGCGACATCTTGCCTGTGGATc > 1:1586760/1‑139 (MQ=255) gcgTTGGGCC‑GGGGGGAAGCGTCGACAGTGCCAGCACCATTACTGGCCGCTCCGCCACTTATTCTCCTGAAGCCCGGTACGACAGGCACGTTGCGCTTGCTGAGAACGGAAAGCGACATCTTGCCTGTGGATCGCGaaa < 2:1586760/139‑1 (MQ=255) gcgTTGGGCC‑GGGGGGAAGCGTCGACAGTGCCAGCACCATTACTGGCCGCTCCGCCACTTATTCTCCTGAAGCCCGGTACGACAGGCACGTTGCGCTTGCTGAGAACGGAAAGCGACATCTTGCCTGTGGATCGCGaaa < 1:1227109/139‑1 (MQ=255) cgTTGGGCC‑GGGGGGAAGCGTCGACAGTGCCAGCACCATTACTGGCCGCTCCGCCACTTATTCTCCTGAAGCCCGGTACGACAGGCACGTTGCGCTTGCTGAGAACGGAAAGCGACATCTTGCCTGTGGATCGCGAAAc < 2:721862/139‑1 (MQ=255) tGGGCC‑GGGGGGAAGCGTCGACAGTGCCAGCACCATTACTGGCCGCTCCGCCACTTAtt > 2:1284913/1‑59 (MQ=255) tGGGCC‑GGGGGGAAGCGTCGACAGTGCCAGCACCATTACTGGCCGCTCCGCCACTTAtt < 1:1284913/59‑1 (MQ=255) tGGGCC‑GGGGGGAAGCGTCGACAGTGCCAGCACCATTACTGGCCGCTCCGCCACTTATTCTCCTGAAGCCCGGTACGACAGGCACGTTGCGCTTGCTGAGaa < 1:1345337/102‑1 (MQ=255) tGGGCC‑GGGGGGAAGCGTCGACAGTGCCAGCACCATTACTGGCCGCTCCGCCACTTATTCTCCTGAAGCCCGGTACGACAGGCACGTTGCGCTTGCTGAGaa > 2:1345337/1‑102 (MQ=255) gggCC‑GGGGGGAAGCGTCGACAGTGCCAGCACCATTACTGGCCGCTCCGCCACTTATTCTCCTGAAGCCCGGTACGACAGGCACGTTGCGCTTGCTGAGAACGGAAAGCGACATCTTGCCTGTGGATCGCGaaa < 1:860405/134‑1 (MQ=255) gggCC‑GGGGGGAAGCGTCGACAGTGCCAGCACCATTACTGGCCGCTCCGCCACTTATTCTCCTGAAGCCCGGTACGACAGGCACGTTGCGCTTGCTGAGAACGGAAAGCGACATCTTGCCTGTGGATCGCGaaa > 2:860405/1‑134 (MQ=255) | AGGCAGGAGTGGTGGTCGGCGGAACGCGATTTATCTTTCCGGCAGACAGAGAATCGATATCTATTTTACTGACTAATACCAGTCAGGAATCCTGGCTTATTAACAGTAAAATCAACCGCCCAACGCGTTGGGCCGGGGGGGAAGCGTCGACAGTGCCAGCACCATTACTGGCCGCTCCGCCACTTATTCTCCTGAAGCCCGGTACGACAGGCACGTTGCGCTTGCTGAGAACGGAAAGCGACATCTTGCCTGTGGATCGCGAAAC > NC_000913/1004020‑1004284 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |