Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	2,012,001	C→T	pseudogene (40/678 nt)	yedN ←	pseudogene, IpaH/YopM family

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	2,012,001	0	C	T	100.0%	264.3 / NA	81	pseudogene (40/678 nt)	yedN	pseudogene, IpaH/YopM family
Reads supporting (aligned to +/- strand):  ref base C (0/0);  new base T (38/43);  total (38/43)

ATTTTTTTTGAAGTCATTCGATGCGCCTTCTTTTACTGAATTAGCCCAGTCGCTGAAACCTTTGCAAAGTCTGGAATCTGTAATTTTCGTAAAGTTGTCTAGAAACTCTGCAATATT‑AGTCGATATAAACTCTAATTTATGCCGAATGGGTGGGTTACCAGTTCCCTGATTTTTTCTATCATGATAAAACCTATCTTATTATAAATCGAGAAATCTTGAAACCAGAGACTATAATCACCCCATTCGAAATATTCTGAGTGCA  >  NC_000913/2011870‑2012131                                                                                                                                     |                                                                                                                                   aTTTTTTTTGAAGTCATTCGATGCGCCTTCTTTTACTGAATTAGCCCAGTCGCTGAAACCTTTGCAAAGTCTGGAATCTGTAATTTTCGTAAAGTTGTCTAGAAACTCTGCAATATT‑AGTCGATATAAACTTTAATTTa                                                                                                                             <  1:1088102/139‑1 (MQ=255) aTTTTTTTTGAAGTCATTCGATGCGCCTTCTTTTACTGAATTAGCCCAGTCGCTGAAACCTTTGCAAAGTCTGGAATCTGTAATTTTCGTAAAGTTGTCTAGAAACTCTGCAATATT‑AGTCGATATAAACTTTAATTTa                                                                                                                             >  1:116542/1‑139 (MQ=255)     tttttGAAGTCATTCGATGCGCCTTCTTTTACTGAATTAGCCCAGTCGCTGAAACCTTTGCAAAGTCTGGAATCTGTAATTTTCGTAAAGTTGTCTAGAAACTCTGCAATATT‑AGTCGATATAAACTTTAATTTATGcc                                                                                                                         <  1:928225/139‑1 (MQ=255)            aGTCATTCGATGCGCCTTCTTTTACTGAATTAGCCCAGTCGCTGAAACCTTTGCAAAGTCTGGAATCTGTAATTTTCGTAAAGTTGTCTAGAAACTCTGCAATATT‑AGTCGATATAAACTTTAATTTATGCCGAAtggg                                                                                                                  <  2:323638/139‑1 (MQ=255)            aGTCATTCGATGCGCCTTCTTTTACTGAATTAGCCCAGTCGCTGAAACCTTTGCAAAGTCTGGAATCTGTAATTTTCGTAAAGTTGTCTAGAAACTCTGCAATATT‑AGTCGATATAAACTTTAATTTATGCCGAAtggg                                                                                                                  <  1:51112/139‑1 (MQ=255)            aGTCATTCGATGCGCCTTCTTTTACTGAATTAGCCCAGTCGCTGAAACCTTTGCAAAGTCTGGAATCTGTAATTTTCGTAAAGTTGTCTAGAAACTCTGCAATATT‑AGTCGATATAAACTTTAATTTATGCCGAAtggg                                                                                                                  <  1:307365/139‑1 (MQ=255)                        cgcCTTCTTTTACTGAATTAGCCCAGTCGCTGAAACCTTTGCAAAGTCTGGAATCTGTAATTTTCGTAAAGTTGTCTAGAAACTCTGCAATATT‑AGTCGATATAAACTTTAATTTATGc                                                                                                                          >  2:1594144/1‑119 (MQ=255)                        cgcCTTCTTTTACTGAATTAGCCCAGTCGCTGAAACCTTTGCAAAGTCTGGAATCTGTAATTTTCGTAAAGTTGTCTAGAAACTCTGCAATATT‑AGTCGATATAAACTTTAATTTATGc                                                                                                                          <  1:1594144/119‑1 (MQ=255)                          ccTTCTTTTACTGAATTAGCCCAGTCGCTGAAACCTTTGCAAAGTCTGGAATCTGTAATTTTCGTAAAGTTGTCTAGAAACTCTGCAATATT‑AGTCGATATAAACTTTAATTTATGCCGAATGGGTGGGTTACCAGTTc                                                                                                    >  2:618972/1‑139 (MQ=255)                                       aaTTAGCCCAGTCGCTGAAACCTTTGCAAAGTCTGGAATCTGTAATTTTCGTAAAGTTGTCTAGAAACTCTGCAATATT‑AGTCGATATAAACTTTAATTTATGCCGAATGGGTGGGTTACCAGTTCCCTGATTTTTTCt                                                                                       >  2:1007322/1‑139 (MQ=255)                                       aaTTAGCCCAGTCGCTGAAACCTTTGCAAAGTCTGGAATCTGTAATTTTCGTAAAGTTGTCTAGAAACTCTGCAATATT‑AGTCGATATAAACTTTAATTTATGCCGAATGGGTGGGTTACCAGTTCCCTGATTTTTTCt                                                                                       >  2:758468/1‑139 (MQ=255)                                        aTTAGCCCAGTCGCTGAAACCTTTGCAAAGTCTGGAATCTGTAATTTTCGTAAAGTTGTCTAGAAACTCTGCAATATT‑AGTCGATATAAACTTTAATTTATGCCGAATGGGTGGGTTACCAGTTCCCTGATTTTTTCTa                                                                                      >  1:492258/1‑139 (MQ=255)                                         ttAGCCCAGTCGCTGAAACCTTTGCAAAGTCTGGAATCTGTAATTTTCGTAAAGTTGTCTAGAAACTCTGCAATATT‑AGTCGATATAAACTTTAATTTATGCCGAATGGGTGGGTTACCAGTTCCCTGATTTTTTCTAt                                                                                     >  2:1148679/1‑139 (MQ=255)                                         ttAGCCCAGTCGCTGAAACCTTTGCAAAGTCTGGAATCTGTAATTTTCGTAAAGTTGTCTAGAAACTCTGCAATATT‑AGTCGATATAAACTTTAATTTATGCCGAATGGGTGGGTTACCAGTTCCCTGATTTTTTCTAt                                                                                     >  1:1239882/1‑139 (MQ=255)                                          tAGCCCAGTCGCTGAAACCTTTGCAAAGTCTGGAATCTGTAATTTTCGTAAAGTTGTCTAGAAACTCTGCAATATT‑AGTCGATATAAACTTTAATTTATGCCGAATGGGTGGGTTACCAGTTCCCTGATTTTTTCTATc                                                                                    <  1:1148679/139‑1 (MQ=255)                                          tAGCCCAGTCGCTGAAACCTTTGCAAAGTCTGGAATCTGTAATTTTCGTAAAGTTGTCTAGAAACTCTGCAATATT‑AGTCGATATAAACTTTAATTTATGCCGAATGGGTGGGTTACCAGTTCCCTGATTTTTTCTATc                                                                                    <  1:233126/139‑1 (MQ=255)                                            gCCCAGTCGCTGAAACCTTTGCAAAGTCTGGAATCTGTAATTTTCGTAAAGTTGTCTAGAAACTCTGCAATATT‑AGTCGATATAAACTTTAATTTATGCCGAATGGGTGGGTTACCAGTTCCCTGATTTTTTCTATCAt                                                                                  >  1:232537/1‑139 (MQ=255)                                                 gTCGCTGAAACCTTTGCAAAGTCTGGAATCTGTAATTTTCGTAAAGTTGTCTAGAAACTCTGCAATATT‑AGTCGATATAAACTTTAATTTATGCCGAATGGGTGGGTTACCAGTTCCCTGATTTTTTCTATCATGATaa                                                                             >  1:803998/1‑139 (MQ=255)                                                 gTCGCTGAAACCTTTGCAAAGTCTGGAATCTGTAATTTTCGTAAAGTTGTCTAGAAACTCTGCAATATT‑AGTCGATATAAACTTTAATTTATGCCGAATGGGTGGGTTACCAGTTCCCTGATTTTTTCTATCATGATaa                                                                             >  1:420087/1‑139 (MQ=255)                                                  tCGCTGAAACCTTTGCAAAGTCTGGAATCTGTAATTTTCGTAAAGTTGTCTAGAAACTCTGCAATATT‑AGTCGATATAAACTTTAATTTATGCCGAATGGGTGGGTTACCAGTTCCCTGATTTTTTCTATCATGATaaa                                                                            <  1:645644/139‑1 (MQ=255)                                                  tCGCTGAAACCTTTGCAAAGTCTGGAATCTGTAATTTTCGTAAAGTTGTCTAGAAACTCTGCAATATT‑AGTCGATATAAACTTTAATTTATGCCGAATGGGTGGGTTACCAGTTCCCTGATTTTTTCTATCATGATaaa                                                                            <  1:622934/139‑1 (MQ=255)                                                    gCTGAAACCTTTGCAAAGTCTGGAATCTGTAATTTTCGTAAAGTTGTCTAGAAACTCTGCAATATT‑AGTCGATATAAACTTTAATTTATGCCGAATGGGTGGGTTGCCAGTTCCCTGATTTTTTCTATCATGATAAAAc                                                                          <  2:1205551/139‑1 (MQ=255)                                                      tGAAACCTTTGCAAAGTCTGGAATCTGTAATTTTCGTAAAGTTGTCTAGAAACTCTGCAATATT‑AGTCGATATAAACTTTAATTTATGCCGAAtggg                                                                                                                  >  1:352243/1‑97 (MQ=255)                                                      tGAAACCTTTGCAAAGTCTGGAATCTGTAATTTTCGTAAAGTTGTCTAGAAACTCTGCAATATT‑AGTCGATATAAACTTTAATTTATGCCGAAtggg                                                                                                                  <  2:352243/97‑1 (MQ=255)                                                      tGAAACCTTTGCAAAGTCTGGAATCTGTAATTTTCGTAAAGTTGTCTAGAAACTCTGCAATATT‑AGTCGATATAAACTTTAATTTATGCCGAATGGGTGGGTTACCAGTTCCCTGATTTTTTCTATCATGATAAAACCt                                                                        >  2:907357/1‑139 (MQ=255)                                                         aaCCTTTGCAAAGTCTGGAATCTGTAATTTTCGTAAAGTTGTCTAGAAACTCTGCAATATT‑AGTCGATATAAACTTTAATTTATGCCGAATGGGTGGGTTACCAGTTCCCTGATTTTTTCTATCATGATAAAACCTATc                                                                     <  2:803998/139‑1 (MQ=255)                                                         aaCCTTTGCAAAGTCTGGAATCTGTAATTTTCGTAAAGTTGTCTAGAAACTCTGCAATATT‑AGTCGATATAAACTTTAATTTATGCCGAATGGGTGGGTTACCAGTTCCCTGATTTTTTCTATCATGATAAAACCTATc                                                                     <  1:564468/139‑1 (MQ=255)                                                               tGCAAAGTCTGGAATCTGTAATTTTCGTAAAGTTGTCTAGAAACTCTGCAATATT‑AGTCGATATAAACTTTAATTTATGcc                                                                                                                         >  2:219645/1‑81 (MQ=255)                                                               tGCAAAGTCTGGAATCTGTAATTTTCGTAAAGTTGTCTAGAAACTCTGCAATATT‑AGTCGATATAAACTTTAATTTATGcc                                                                                                                         <  1:219645/81‑1 (MQ=255)                                                                gCAAAGTCTGGAATCTGTAATTTTCGTAAAGTTGTCTAGAAACTCTGCAATATT‑AGTCGATATAAACTTTAATTTATGCCGAATGGGTGGGTTACCAGTTCCCTGATTTTTTCTATCATGATAAAACCTATCTtattat                                                              <  1:618972/139‑1 (MQ=255)                                                                    aGTCTGGAATCTGTAATTTTCGTAAAGTTGTCTAGAAACTCTGCAATATT‑AGTCGATATAAACTTTAATTTATGCCGAATGGGTGGGTTACCAGTTCCCTGATTTTTTCTATCATGATAAAACCTATCTTATTATAAAt                                                          >  2:29122/1‑139 (MQ=255)                                                                      tCTGGAATCTGTAATTTTCGTAAAGTTGTCTAGAGACTCTGCAATATT‑AGTCGATATAAACTTTAATTTATGCCGAATGGGTGGGTTACCAGTTCCCTGATTTTTTCTATCATGATAAAACCTATc                                                                     >  2:1317885/1‑126 (MQ=255)                                                                      tCTGGAATCTGTAATTTTCGTAAAGTTGTCTAGAGACTCTGCAATATT‑AGTCGATATAAACTTTAATTTATGCCGAATGGGTGGGTTACCAGTTCCCTGATTTTTTCTATCATGATAAAACCTATc                                                                     <  1:1317885/126‑1 (MQ=255)                                                                                gTAATTTTCGTAAAGTTGTCTAGAAACTCTGCAATATT‑AGTCGATATAAACTTTAATTTATGCCGAATGGGTGGGTTACCAGTTCCCTGATTTTTTCTATCATGATaa                                                                             <  2:111392/108‑1 (MQ=255)                                                                                gTAATTTTCGTAAAGTTGTCTAGAAACTCTGCAATATT‑AGTCGATATAAACTTTAATTTATGCCGAATGGGTGGGTTACCAGTTCCCTGATTTTTTCTATCATGATaa                                                                             >  1:111392/1‑108 (MQ=255)                                                                                gTAATTTTCGTAAAGTTGTCTAGAAACTCTGCAATATT‑AGTCGATATAAACTTTAATTTATGCCGAATGGGTGGGTTACCAGTTCCCTGATTTTTTCTATCATGATAAAAcc                                                                         <  2:174726/112‑1 (MQ=255)                                                                                gTAATTTTCGTAAAGTTGTCTAGAAACTCTGCAATATT‑AGTCGATATAAACTTTAATTTATGCCGAATGGGTGGGTTACCAGTTCCCTGATTTTTTCTATCATGATAAAAcc                                                                         >  1:174726/1‑112 (MQ=255)                                                                                gTAATTTTCGTAAAGTTGTCTAGAAACTCTGCAATATT‑AGTCGATATAAACTTTAATTTATGCCGAATGGGTGGGTTACCAGTTCCCTGATTTTTTCTATCATGATAAAACCTATCTTATTATAAATCGAGAAATCTTg                                              >  1:1614089/1‑139 (MQ=255)                                                                                gTAATTTTCGTAAAGTTGTCTAGAAACTCTGCAATATT‑AGTCGATATAAACTTTAATTTATGCCGAATGGGTGGGTTACCAGTTCCCTGATTTTTTCTATCATGATAAAACCTATCTTATTATAAATCGAGAAATCTTg                                              >  2:791987/1‑139 (MQ=255)                                                                                gTAATTTTCGTAAAGTTGTCTAGAAACTCTGCAATATT‑AGTCGATATAAACTTTAATTTATGCCGAATGGGTGGGTTACCAGTTCCCTGATTTTTTCTATCATGATAAAACCTATCTTATTATAAATCGAGAAATCTTg                                              >  1:1340456/1‑139 (MQ=255)                                                                                    ttttCGTAAAGTTGTCTAGAAACTCTGCAATATT‑AGTCGATATAAACTTTAATTTATGCCGAATGGGTGGGTTACCAGTTCCCTGATTTTTTCTATCATGATaa                                                                             <  2:1430978/104‑1 (MQ=255)                                                                                    ttttCGTAAAGTTGTCTAGAAACTCTGCAATATT‑AGTCGATATAAACTTTAATTTATGCCGAATGGGTGGGTTACCAGTTCCCTGATTTTTTCTATCATGATaa                                                                             >  1:1430978/1‑104 (MQ=255)                                                                                     tttCGTAAAGTTGTCTAGAAACTCTGCAATATT‑AGTCGATATAAACTTTAATTTATGCCGAATGGGTGGGTTACCAGTTCCCTGATTTTTTCTATCATGATAAAACCTATCTTATTATAAATCGAGAAATCTTGAAAcc                                         <  2:420087/139‑1 (MQ=255)                                                                                      ttCGTAAAGTTGTCTAGAAACTCTGCAATATT‑AGTCGATATAAACTTTAATTTATGCCGAATGGGTGGGTTACCAGTTCCCTGATTTTTTCTATCATGATAAAACCTATCTTATTATAAATCGAGAAATCTTGAAACCa                                        <  1:454683/139‑1 (MQ=255)                                                                                      ttCGTAAAGTTGTCTAGAAACTCTGCAATATT‑AGTCGATATAAACTTTAATTTATGCCGAATGGGTGGGTTACCAGTTCCCTGATTTTTTCTATCATGATAAAACCTATCTTATTATAAATCGAGAAATCTTGAAACCa                                        <  2:1340456/139‑1 (MQ=255)                                                                                      ttCGTAAAGTTGTCTAGAAACTCTGCAATATT‑AGTCGATATAAACTTTAATTTATGCCGAATGGGTGGGTTACCAGTTCCCTGATTTTTTCTATCATGATAAAACCTATCTTATTATAAATCGAGAAATCTTGAAACCa                                        <  2:912045/139‑1 (MQ=255)                                                                                       tCGTAAAGTTGTCTAGAAACTCTGCAATATT‑AGTCGATATAAACTTTAATTTATGCCGAATGGGTGGGTTACCAGTTCCCTGATTTTTTCTAt                                                                                     >  2:1624830/1‑93 (MQ=255)                                                                                       tCGTAAAGTTGTCTAGAAACTCTGCAATATT‑AGTCGATATAAACTTTAATTTATGCCGAATGGGTGGGTTACCAGTTCCCTGATTTTTTCTAt                                                                                     <  1:1624830/93‑1 (MQ=255)                                                                                       tCGTAAAGTTGTCTAGAAACTCTGCAATATT‑AGTCGATATAAACTTTAATTTATGCCGAATGGGTGGGTTACCAGTTCCCTGATTTTTTCTATCATGATAAAACCTATCTTATTATAAATCGAGAAATCTTGAAACCag                                       <  1:791987/139‑1 (MQ=255)                                                                                       tCGTAAAGTTGTCTAGAAACTCTGCAATATT‑AGTCGATATAAACTTTAATTTATGCCGAATGGGTGGGTTACCAGTTCCCTGATTTTTTCTATCATGATAAAACCTATCTTATTATAAATCGAGAAATCTTGAAACCag                                       <  2:492258/139‑1 (MQ=255)                                                                                        cGTAAAGTTGTCTAGAAACTCTGCAATATT‑AGTCGATATAAACTTTAATTTATGCCGAATGGGTGGGTTACCAGTTCCCTGATTTTTTCTATCATGATAAAACCTATCTTATTATAAATCGAGAAATCTTGAAACCaga                                      <  1:724544/139‑1 (MQ=255)                                                                                         gTAAAGTTGTCTAGAAACTCTGCAATATTAAGTCGATATAAACTTTAATTTATGCCGAATGGGTGGGTTACCAGTTCCCTGATTTTTTCTATCATGATAAAACCTATCTTATTATAAATCGAGAAATCTTGAAACCaga                                      >  1:519875/1‑139 (MQ=255)                                                                                         gTAAAGTTGTCTAGAAACTCTGCAATATT‑AGTCGATATAAACTTTAATTTATGCCGAATGGGTGGGTTACCAGTTCTCTGATTTTTTCTATCATGATAAAAc                                                                          <  1:686628/102‑1 (MQ=255)                                                                                         gTAAAGTTGTCTAGAAACTCTGCAATATT‑AGTCGATATAAACTTTAATTTATGCCGAATGGGTGGGTTACCAGTTCTCTGATTTTTTCTATCATGATAAAAc                                                                          >  2:686628/1‑102 (MQ=255)                                                                                           aaaGTTGTCTAGAAACTCTGCAATATT‑AGTCGATATAAACTTTAATTTATGCCGAATGGGTGGGTTACCAGTTCCCTGATTTTTTCTATCATGATAAAAc                                                                          <  2:965982/100‑1 (MQ=255)                                                                                           aaaGTTGTCTAGAAACTCTGCAATATT‑AGTCGATATAAACTTTAATTTATGCCGAATGGGTGGGTTACCAGTTCCCTGATTTTTTCTATCATGATAAAAc                                                                          >  1:965982/1‑100 (MQ=255)                                                                                           aaaGTTGTCTAGAAACTCTGCAATATT‑AGTCGATATAAACTTTAATTTATGCCGAATGGGTGGGTTACCAGTTCCCTGATTTTTTCTATCATGATAAAACCTATCTTATTATAAATCGAGAAATCTTGAAACCAGAGAc                                   <  2:1239882/139‑1 (MQ=255)                                                                                           aaaGTTGTCTAGAAACTCTGCAATATT‑AGTCGATATAAACTTTAATTTATGCCGAATGGGTGGGTTACCAGTTCCCTGATTTTTTCTATCATGATAAAACCTATCTTATTATAAATCGAGAAATCTTGAAACCAGAGAc                                   <  2:232537/139‑1 (MQ=255)                                                                                            aaGTTGTCTAGAAACTCTGCAATATT‑AGTCGATATAAACTTTAATTTATGCCGAATGGGTGGGTTACCAGTTCCCTGATTTTTTCTATCATGATAAAACCTATCTTATTATAAATCGAGAAATCTTGAAACCAGAGACt                                  <  2:1582119/139‑1 (MQ=255)                                                                                                  tCTAGAAACTCTGCAATATT‑AGTCGATATAAACTTTAATTTATGCCGAATGGGTGGGTTACCAGTTCCCTGATTTTTTCTATCATGATAAAACCTATCTTATTATAAATCGAGAAATCTTGAAACCAGAGACTATAATc                            >  1:638989/1‑139 (MQ=255)                                                                                                  tCTAGAAACTCTGCAATATT‑AGTCGATATAAACTTTAATTTATGCCGAATGGGTGGGTTACCAGTTCCCTGATTTTTTCTATCATGATAAAACCTATCTTATTATAAATCGAGAAATCTTGAAACCAGAGACTATAATc                            >  2:364023/1‑139 (MQ=255)                                                                                                         aCTCTGCAATATT‑AGTCGATATAAACTTTAATTTATGCCGAATGGGTGGGTTACCAGTTCCCTGATTTTTTCTATCATGATAAAACCTATCTTATTATAAATCGAGAAATCTTGAAACCAGAGACTATAATCACCCCAt                     <  2:116542/139‑1 (MQ=255)                                                                                                         aCTCTGCAATATT‑AGTCGATATAAACTTTAATTTATGCCGAATGGGTGGGTTACCAGTTCCCTGATTTTTTCTATCATGATAAAACCTATCTTATTATAAATCGAGAAATCTTGAAACCAGAGACTATAATCACCCCAt                     <  1:1197315/139‑1 (MQ=255)                                                                                                         aCTCTGCAATATT‑AGTCGATATAAACTTTAATTTATGCCGAATGGGTGGGTTACCAGTTCCCTGATTTTTTCTATCATGATAAAACCTATCTTATTATAAATCGAGAAATCTTGAAACCAGAGACTATAATCACCCCAt                     <  1:29122/139‑1 (MQ=255)                                                                                                            ctGCAATATT‑AGTCGATATAAACTTTAATTTATGCCGAATGGGTGGGTTACCAGTTCCCTGATTTTTTCTATCATGATAAAACCTATCTTATTATAAATCGAGAAATCTTGAAACCa                                        <  2:292833/117‑1 (MQ=255)                                                                                                            ctGCAATATT‑AGTCGATATAAACTTTAATTTATGCCGAATGGGTGGGTTACCAGTTCCCTGATTTTTTCTATCATGATAAAACCTATCTTATTATAAATCGAGAAATCTTGAAACCa                                        >  1:292833/1‑117 (MQ=255)                                                                                                            ctGCAATATT‑AGTCGATATAAACTTTAATTTATGCCGAATGGGTGGGTTACCAGTTCCCTGATTTTTTCTATCATGATAAAACCTATCTTATTATAAATCGAGAAATCTTGAAACCAGAGACTATAATCACCCCATTCg                  >  2:502153/1‑139 (MQ=255)                                                                                                              gCAATATT‑AGTCGATATAAACTTTAATTTATGCCGAATGGGTGGGTTACCAGTTCCCTGATTTTTTCTATCATGATAAAACCTATc                                                                     >  2:133818/1‑86 (MQ=255)                                                                                                              gCAATATT‑AGTCGATATAAACTTTAATTTATGCCGAATGGGTGGGTTACCAGTTCCCTGATTTTTTCTATCATGATAAAACCTATc                                                                     <  1:133818/86‑1 (MQ=255)                                                                                                                     t‑AGTCGATATAAACTTTAATTTATGCCGAATGGGTGGGTTACCAGTTCCCTGATTTTTTCTATc                                                                                    <  2:1557329/64‑1 (MQ=255)                                                                                                                     t‑AGTCGATATAAACTTTAATTTATGCCGAATGGGTGGGTTACCAGTTCCCTGATTTTTTCTATc                                                                                    >  1:1557329/1‑64 (MQ=255)                                                                                                                     t‑AGTCGATATAAACTTTAATTTATGCCGAATGGGTGGGTTACCAGTTCCCTGATTTTTTCTATCATGATAAAACCTATCTTATTATAAATCGAGAAATCTTGAAACCAGAGACTATAATCACCCCATTCGAAATATTCt         >  2:863879/1‑139 (MQ=255)                                                                                                                        gTCGATATAAACTTTAATTTATGCCGAATGGGTGGGTTACCAGTTCCCTGATTTTTTCTATCATGATAAAACCTATCTTATTATAAATCGTGAAATCTTGAAACCAGAGACTATAATCACCCCATTCGAAATATTCTGa       >  1:49339/1‑139 (MQ=255)                                                                                                                        gTCGATATAAACTTTAATTTATGCCGAATGGGTGGGTTACCAGTTCCCTGATTTTTTCTATCATGATAAAACCTATCTTATTATAAATCGAGAAATCTTGAAACCAGAGACTATAATCACCCCATTCGAAat              <  1:33029/132‑1 (MQ=255)                                                                                                                        gTCGATATAAACTTTAATTTATGCCGAATGGGTGGGTTACCAGTTCCCTGATTTTTTCTATCATGATAAAACCTATCTTATTATAAATCGAGAAATCTTGAAACCAGAGACTATAATCACCCCATTCGAAat              >  2:33029/1‑132 (MQ=255)                                                                                                                         tCGATATAAACTTTAATTTATGCCGAATGGGTGGGTTACAAGTTCCCTGATTTTTTCTATCATGATCAAACCTATCTTATTATAAATCGAGAAATCTTAAAACCAGAGACTATAATCACCCCATGCGAAATATTCTGAg      <  1:1007322/139‑1 (MQ=255)                                                                                                                             tataAACTTTAATTTATGTCGAATGGGTGGGTTACCAGTTCCCTGATTTTTTCTATCATGATAAAACCTATCTTATTATAAATCGAGAAATCTTGAAACCag                                       <  1:1547422/102‑1 (MQ=255)                                                                                                                             tataAACTTTAATTTATGTCGAATGGGTGGGTTACCAGTTCCCTGATTTTTTCTATCATGATAAAACCTATCTTATTATAAATCGAGAAATCTTGAAACCag                                       >  2:1547422/1‑102 (MQ=255)                                                                                                                             tataAACTTTAATTTATGCCGAATGGGTGGGTTACCAGTTCCCTGATTTTTTCTATCATGATAAAAc                                                                          >  2:628027/1‑67 (MQ=255)                                                                                                                             tataAACTTTAATTTATGCCGAATGGGTGGGTTACCAGTTCCCTGATTTTTTCTATCATGATAAAAc                                                                          <  1:628027/67‑1 (MQ=255)                                                                                                                             tataAACTTTAATTTATGCCGAATGGGTGGGTTACCAGTTCCCTGATTTTTTCTATCATGATAAAACCTATCTTATTATAAATCGAGATATCTTGAAACCAGAGACTATAATCACCCCATTCGAAATATTCTGAGTGCa  >  1:1048444/1‑139 (MQ=255)                                                                                                                                     |                                                                                                                                   ATTTTTTTTGAAGTCATTCGATGCGCCTTCTTTTACTGAATTAGCCCAGTCGCTGAAACCTTTGCAAAGTCTGGAATCTGTAATTTTCGTAAAGTTGTCTAGAAACTCTGCAATATT‑AGTCGATATAAACTCTAATTTATGCCGAATGGGTGGGTTACCAGTTCCCTGATTTTTTCTATCATGATAAAACCTATCTTATTATAAATCGAGAAATCTTGAAACCAGAGACTATAATCACCCCATTCGAAATATTCTGAGTGCA  >  NC_000913/2011870‑2012131

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑