Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 4,623,101 C→T *339* (TAG→TAA)  lplA ← lipoate‑protein ligase A

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009134,623,1010CT100.0% 112.5 / NA 35*339* (TAG→TAA) lplAlipoate‑protein ligase A
Reads supporting (aligned to +/- strand):  ref base C (0/0);  new base T (13/22);  total (13/22)

ATCCCGCTGGCGCAGCAGTTCTGGCAAACGGTCGCCAGAGATCCGCGTATCAGCGAGGCGTTTCGCCACATTGCGCAAGAAATGCCGGAAAAAATCCGGCAAATCGAAGAGAAAGTTGCCCGCATGGGCGGGTAACTACCTTACAGCCCCCGCCATCCATGCCGATAACTCCCGTAGCTCTTTTTCCTGTTCCGGGAAGTCAACCAACAGCGCTTCGCACTCCTGTTGCAGCATATCTGCGCGGTACAGGCAGCCTTGCAGTCGTCCGGCG  >  NC_000913/4622966‑4623236
                                                                                                                                       |                                                                                                                                       
aTCCCGCTGGCGCAGCAGTTCTGGCAAACGGTCGCCAGAGATCCGCGTATCAGCGAGGCGTTTCGCCACATTGCGCAAGAAATGCCGGAAAAAATCCGGCAAATCGAAGAGAAAGTTGCCCGCATGGGCGGGTAATTAc                                                                                                                                      >  1:1149506/1‑139 (MQ=255)
aTCCCGCTGGCGCAGCAGTTCTGGCAAACGGTCGCCAGAGATCCGCGTATCAGCGAGGCGTTTCGCCACATTGCGCAAGAAATGCCGGAAAAAATCCGGCAAATCGAAGAGAAAGTTGCCCGCATGGGCGGGTAATTAc                                                                                                                                      >  1:311710/1‑139 (MQ=255)
    cGCTGGCGCAGCAGTTCTGGCAAACGGTCGCCAGAGATCCGCGTATCAGCGAGGCGTTTCGCCACATTGCGCAAGAAATGCCGGAAAAAATCCGGCAAATCGAAGAGAAAGTTGCCCGCATGGGCGGGTAATTACCTTa                                                                                                                                  <  1:54799/139‑1 (MQ=255)
      cTGGCGCAGCAGTTCTGGCAAACGGTCGCCAGAGATCCGCGTATCAGCGAGGCGTTTCGCCACATTGCGCAAGAAATGCCGGAAAAAATCCGGCAAATCGAAGAGAAAGTTGCCCGCATGGGCGGGTAATTACCTTACa                                                                                                                                <  2:1023032/139‑1 (MQ=255)
        ggCGCAGCAGTTCTGGCAAACGGTCGCCAGAGATCCGCGTATCAGCGAGGCGTTTCGCCACATTGCGCAAGAAATGCCGGAAAAAATCCGGCAAATCGAAGAGAAAGTTGCCCGCATGGGCGGGTAATTACCTTACAGc                                                                                                                              <  1:667380/139‑1 (MQ=255)
             agcagTTCTGGCAAACGGTCGCCAGAGATCCGCGTATCAGCGAGGCGTTTCGCCACATTGCGCAAGAAATGCCGGAAAAAATCCGGCAAATCGAAGAGAAAGTTGCCCGCATGGGCGGGTAATTACCTTACAGCCCCCg                                                                                                                         <  2:1149506/139‑1 (MQ=255)
             agcagTTCTGGCAAACGGTCGCCAGAGATCCGCGTATCAGCGAGGCGTTTCGCCACATTGCGCAAGAAATGCCGGAAAAAATCCGGCAAATCGAAGAGAAAGTTGCCCGCATGGGCGGGTAATTACCTTACAGCCCCCg                                                                                                                         <  1:433416/139‑1 (MQ=255)
                         aaaCGGTCGCCAGAGATCCGCGTATCAGCGAGGCGTTTCGCCACATTGCGCAAGAAATGCCGGAAAAAATCCGGCAAATCGAAGAGAAAGTTGCCCGCATGGGCGGGTAATTACCTTACAGCCCCCGCCATCCATGCCg                                                                                                             >  2:715037/1‑139 (MQ=255)
                            cGGTCGCCAGAGATCCGCGTATCAGCGAGGCGTTTCGCCACATTGCGCAAGAAATGCCGGAAAAAATCCGGCAAATCGAAGAGAAAGTTGCCCGCATGGGCGGGTAATTACCTTACAGCCCCCGCCATCCATg                                                                                                                <  1:1559732/133‑1 (MQ=255)
                            cGGTCGCCAGAGATCCGCGTATCAGCGAGGCGTTTCGCCACATTGCGCAAGAAATGCCGGAAAAAATCCGGCAAATCGAAGAGAAAGTTGCCCGCATGGGCGGGTAATTACCTTACAGCCCCCGCCATCCATg                                                                                                                >  2:1559732/1‑133 (MQ=255)
                                      agaTCCGCGTATCAGCGAGGCGTTTCGCCACATTGCGCAAGAAATGCCGGAAAAAATCCGGCAAATCGAAGAGAAAGTTGCCCGCATGGGCGGGTAATTACCTTACAGCCCCCGCCATCCATGCCGATAACTCCCGTAg                                                                                                <  2:843888/139‑1 (MQ=255)
                                               tATCAGCGAGGCGTTTCGCCACATTGCGCAAGAAATGCCGGAAAAAATCCGGCAAATCGAAGAGAAAGTTGCCCGCATGGGCGGGTAATTACCTTACAGCCCCCGCCATCCATGCCGATAACTCCCGTAGCTCTTTTTc                                                                                       <  2:619916/139‑1 (MQ=255)
                                                aTCAGCGAGGCGTTTCGCCACATTGCGCAAGAAATGCCGGAAAAAATCCGGCAAATCGAAGAGAAAGTTGCCCGCATGGGCGGGTAATTACCTTACAGCCCCCGCCATCCATGCCGATAACTCCCGTAGCTCTTTTTcc                                                                                      >  2:1302847/1‑139 (MQ=255)
                                                            tttCGCCACATTGCGCAAGAAATGCCGGAAAAAATCCGGCAAATCGAAGAGAAAGTTGCCCGCATGGGCGGGTAATTACCTTACAGCCCCCGCCATCCATGCCGATAACTCCCGTAGCTCTTTTTCCTGTTCCGGGAAg                                                                          <  2:311710/139‑1 (MQ=255)
                                                                   acaTTGCGCAAGAAATGCCGGAAAAAATCCGGCAAATCGAAGAGAAAGTTGCCCGCATGGGCGGGTAATTACCTTACAGCCCCCGCCATCCATGCCGATAACTCCCGTAGCTCTTTTTCCTGTTCCGGGa                                                                            <  1:651650/130‑1 (MQ=255)
                                                                   acaTTGCGCAAGAAATGCCGGAAAAAATCCGGCAAATCGAAGAGAAAGTTGCCCGCATGGGCGGGTAATTACCTTACAGCCCCCGCCATCCATGCCGATAACTCCCGTAGCTCTTTTTCCTGTTCCGGGa                                                                            >  2:651650/1‑130 (MQ=255)
                                                                       tGCGCAAGAAATGCCGGAAAAAATCCGGCAAATCGAAGAGAAAGTTGCCCGCATGGGCGGGTAATTACCTTACAGCCCCCGCCATCCATGCCGATAACTCCCGTAGCTCTTTTTCCTGTTCCGGGAAGTCAACCAACAg                                                               <  2:1554653/139‑1 (MQ=255)
                                                                         cgcAAGAAATGCCGGAAAAAATCCGGCAAATCGAAGAGAAAGTTGCCCGCATGGGCGGGTAATTACCTTACAGCCCCCGCCATCCATGCCGATAACTCCCGTAGCTCTTTTTCCTGTTCCGGGAAGTCAACCAACAgcg                                                             <  1:265710/139‑1 (MQ=255)
                                                                                   gCCGGATAAAATCCGGCAAATCGAAGAGAAAGTTGCCCGCATGGGCGGGTAATTACCTTACAGCCCCCGCCATCCATGCCGATAACTCCCGTAGCTCTTTTTCCTGTTTCGGGAAGTCAACCAACAgcg                                                             <  1:1125465/129‑1 (MQ=255)
                                                                                   gCCGGAAAAAATCCGGCAAATCGAAGAGAAAGTTGCCCGCATGGGCGGGTAATTACCTTACAGCCCCCGCCATCCATGCCGATAACTCCCGTAGCTCTTTTTCCTGTTCCGGGAAGTCAACCAACAgcg                                                             >  2:1125465/1‑129 (MQ=255)
                                                                                    ccGGAAAAAATCCGGCAAATCGAAGAGAAAGTTGCCCGCATGGGCGGGTAATTACCTTACAGCCCCCGCCATCCATGCCGATAACTCCCGTAGCTCTTTTTCCTGTTCCGGGAAGTCAACCAACAGCGCTTCGCACTcc                                                  >  1:419503/1‑139 (MQ=255)
                                                                                       gAAAAAATCCGGCAAATCGAAGAGAAAGTTGCCCGCATGGGCGGGTAATTACCTTACAGCCCCCGCCATCCATGCCGATAACTCCCGTAGCTCTTTTTCCTGTTCCGGGAAGTCAACCAACAGCGCTTCGCACTCCTGt                                               <  2:551201/139‑1 (MQ=255)
                                                                                         aaaaaTCCGGCAAATCGAAGAGAAAGTTGCCCGCATGGGCGGGTAATTACCTTACAGCCCCCGCCATCCATGCCGATAACTCCCGTAGctct                                                                                            <  2:1081856/92‑1 (MQ=255)
                                                                                         aaaaaTCCGGCAAATCGAAGAGAAAGTTGCCCGCATGGGCGGGTAATTACCTTACAGCCCCCGCCATCCATGCCGATAACTCCCGTAGctct                                                                                            >  1:1081856/1‑92 (MQ=255)
                                                                                             aTCCGGCAAATCGAAGAGAAAGTTGCCCGCATGGGCGGGTAATTACCTTACAGCCCCCGCCATCCATGCCGATAACTCCCGTAGCTCTTTTTCCTGTTCCGGGa                                                                            <  1:847946/104‑1 (MQ=255)
                                                                                             aTCCGGCAAATCGAAGAGAAAGTTGCCCGCATGGGCGGGTAATTACCTTACAGCCCCCGCCATCCATGCCGATAACTCCCGTAGCTCTTTTTCCTGTTCCGGGa                                                                            >  2:847946/1‑104 (MQ=255)
                                                                                                     aaTCGAAGAGAAAGTTGCCCGCATGGGCGGGTAATTACCTTACAGCCCCCGCCATCCATGCCGATAACTCCCGTAGCTCTTTTTCCTGTTCCGGGAAGTCAACCAACAGCGCTTCGCACTCCTGTTGCAGCATATCTgc                                 <  2:922307/139‑1 (MQ=255)
                                                                                                      aTCGAAGAGAAAGTTGCCCGCATGGGCGGGTAATTACCTTACAGcccc                                                                                                                           <  1:811508/48‑1 (MQ=255)
                                                                                                      aTCGAAGAGAAAGTTGCCCGCATGGGCGGGTAATTACCTTACAGcccc                                                                                                                           >  2:811508/1‑48 (MQ=255)
                                                                                                      aTCGAAGAGAAAGTTGCCCGCATGGGCGGGTAATTACCTTACAGCCCCCGCCATCCATGCCGATAACTCCCGTAGCTCTTTTTCCTGTTCCGGGAAGTCAACCAACAGCGCTTCGCACTCCTGTTGCAGCATATCTgcg                                <  1:584363/139‑1 (MQ=255)
                                                                                                                         gCATGGGCGGGTAATTACCTTACAGCCCCCGCCATCCATGCCGATAACTCCCGTAGCTCTTTTTCCTGTTCCGGGAAGTCAACCAACAGCGCTTCGCACTCCTGTTGCAGCATATCTgcg                                <  2:1512079/120‑1 (MQ=255)
                                                                                                                         gCATGGGCGGGTAATTACCTTACAGCCCCCGCCATCCATGCCGATAACTCCCGTAGCTCTTTTTCCTGTTCCGGGAAGTCAACCAACAGCGCTTCGCACTCCTGTTGCAGCATATCTgcg                                >  1:1512079/1‑120 (MQ=255)
                                                                                                                            tGGGCGGGTAATTACCTTACAGCCCCCGCCATCCATGCCGATAACTCCCGTAGCTCTTTTTCCTGTTCCg                                                                               <  2:294287/70‑1 (MQ=255)
                                                                                                                            tGGGCGGGTAATTACCTTACAGCCCCCGCCATCCATGCCGATAACTCCCGTAGCTCTTTTTCCTGTTCCg                                                                               >  1:294287/1‑70 (MQ=255)
                                                                                                                                    tAATTACCTTACAGCCTCCGCCATCCATGCCGATAACTCCCGTAGCTCTTTTTCCTGTTCCGGGAAGTCAACCAACAGCGCTTCGCACTCCTGTTGCAGCATATCTGCGCGGTACAGGCAGCCTTGCAGTCGTCCAGCg  <  1:1126030/139‑1 (MQ=255)
                                                                                                                                       |                                                                                                                                       
ATCCCGCTGGCGCAGCAGTTCTGGCAAACGGTCGCCAGAGATCCGCGTATCAGCGAGGCGTTTCGCCACATTGCGCAAGAAATGCCGGAAAAAATCCGGCAAATCGAAGAGAAAGTTGCCCGCATGGGCGGGTAACTACCTTACAGCCCCCGCCATCCATGCCGATAACTCCCGTAGCTCTTTTTCCTGTTCCGGGAAGTCAACCAACAGCGCTTCGCACTCCTGTTGCAGCATATCTGCGCGGTACAGGCAGCCTTGCAGTCGTCCGGCG  >  NC_000913/4622966‑4623236

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑