| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 2,854,733 | (T)5→4 | coding (396/2079 nt) | fhlA → | formate hydrogenlyase transcriptional activator |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 2,854,729 | 0 | T | . | 100.0% | 94.2 / NA | 24 | coding (392/2079 nt) | fhlA | formate hydrogenlyase transcriptional activator |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base . (12/12); total (12/12) | |||||||||||
TTTTGTCGCGCCCTGATACGCTGCATTGCAGTTACGAAGAATTTTGTGAAACCTGGCCGCAGCTGGACGCAGGTGGGCTATACCCAAAATTTGGTCACTATTGCCTGATGCCACTGGCGGCGGAAGGGCATATTTTTGGTGGCTGTGAATTTATTCGTTATGACGATCGCCCCTGGAGCGAAAAAGAGTTCAATCGTCTGCAAACATTTACGCAGATCGTTTCTGTCGTCACCGAACAAATCCAGAGCCG > NC_000913/2854597‑2854846 | ttttGTCGCGCCCTGATACGCTGCATTGCAGTTACGAAGAATTTTGTGAAACCTGGCCGCAGCTGGACGCAGGTGGGCTATACCCAAAATTTGGTCACTATTGCCTGATGCCACTGGCGGCGGAAGGGCATAttttggt < 2:1126235/139‑4 (MQ=255) gcCCTGATACGCTGCATTGCAGTTACGAAGAATTTTGTGAAACCTGGCCGCAGCTGGACGCAGGTGGGCTATACCCAAAATTTGGTCACTATTGCCTGATGCCACTGGCGGCGGAAGGGCATA‑TTTTGGTGGCTGTGaa < 2:1159506/139‑1 (MQ=255) tGCATTGCAGTTACGAAGAATTTTGTGAAACCTGGCCGCAGCTGGACGCAGGTGGGCTATACCCAAAATTTGGTCACTATTGCCTGATGCCACTGGCGGCGGAAGGGCATA‑TTTTGGTGGCTGTGAATTTATTCGTTAt > 2:684301/1‑139 (MQ=255) aCGAAGAATTTTGTGAAACCTGGCCGCAGCTGGACGCAGGTGGGCTATACCCAAAATTTGGTCACTATTGCCTGATGCCACTGGCGGCGGAAGGGCATA‑TTTTGGTGGCtgt > 1:186053/1‑112 (MQ=255) aCGAAGAATTTTGTGAAACCTGGCCGCAGCTGGACGCAGGTGGGCTATACCCAAAATTTGGTCACTATTGCCTGATGCCACTGGCGGCGGAAGGGCATA‑TTTTGGTGGCtgt < 2:186053/112‑1 (MQ=255) gaagaaTTTTGTGAAACCTGGCCGCAGCTGGACGCAGGTGGGCTATACCCAAAATTTGGTCACTATTGCCTGATGCCACTGGCGGCGGAAGGGCATA‑TTTTGGTGGCTGTGAATTTATTCGTTATGACGATCGCCCCTg < 2:683344/139‑1 (MQ=255) gtgAAACCTGGCCGCAGCTGGACGCAGGTGGGCTATACCCAAAATTTGGTCACTATTGCCTGATGCCACTGGCGGCGGAAGGGCATA‑TTTTGGTGGCTGTGAATTTATTCGTTATGACGATCGCCCCTGGAGCGaaaaa < 1:373962/139‑1 (MQ=255) ccTGGCCGCAGCTGGACGCAGGTGGGCTCTACCCAAAATTTGGTCACTAATGCCTGATGCCACTGGCGGCGGAAGGGCATA‑TTTTGGTGGCTGTGAAtt > 2:975736/1‑99 (MQ=255) ccTGGCCGCAGCTGGACGCAGGTGGGCTATACCCAAAATTTGGTCACTATTGCCTGATGCCACTGGCGGCGCAAGGGCATA‑TTTTGGTGGCTGTGAAtt < 1:975736/99‑1 (MQ=255) ggCCGCAGCTGGACGCAGGTGGGCTATACCCAAAATTTGGTCACTATTGCCTGATGCCACTGGCGGCGGAAGGGCATA‑TTTTGGTGGCTGTGAATTTATTCGTTATGACGATCGCCCCTGGAGCGAAAAAGAGTTCAAt > 1:1218873/1‑139 (MQ=255) gCCGCAGCTGGACGCAGGTGGGCTATACCCAAAATTTGGTCACTATTGCCTGATGCCACTGGCGGCGGAAGGGCATA‑TTTTGGTGGCTGTGAATTTATTCGTTATGACGATCGCCCCTGGAGCGAAAAAGAGTTCAATc < 2:1218873/139‑1 (MQ=255) ccGCAGCTGGACGCAGGTGGGCTATACCCAAAATTTGGTCACTATTGCCTGATGCCACTGGCGGCGGAAGGGCATA‑TTTTGGTGGCTGTGAATTGATTCGTTATGACGATCGCCCCTGGAGCGAAAAAGAGTTCAATCg < 2:1066180/139‑1 (MQ=255) aGCTGGACGCAGGTGGGCTATACCCAAAATTTGGTCACTATTGCCTGATGCCACTGGCGGCGGAAGGGCATA‑TTTTGGTGGCTGTGAATTTATTCGTTATGACGATCGCCCCTGGAGCGAAAAAGAGTTCAATCGTCTg > 2:1439313/1‑139 (MQ=255) gCTGGACGCAGGTGGGCTATACCCAAAATTTGGTCACTATTGCCTGATGCCACTGGCGGCGGAAGGGCATA‑TTTTGGTGGCTGTGAATTTATTCGTTATGACGATCGCCCCTGGAGCGAAAAAGAGTTCAATCGTCTGc > 1:1361795/1‑139 (MQ=255) taCCCAAAATTTGGTCACTATTGCCTGATGCCACTGGCGGCGGAAGGGCATA‑GTTTGGTGGCTGTGAATTTATTCGTTATGACGATCGCCCCTGGAGCGAAAAAGAGTTCAATCGTCTGCAAACATTTACGCAGATCGt > 1:1130695/1‑139 (MQ=255) tGGTCACTATTGCCTGATGCCACTGGCGGCGGAAGGGCATA‑TTTTGGTGGCTGTGAATTTATTCGTTATGACGATCGCCCCTGGAGCGAAAAAGAGTTCAATCGTCTGCAAACATTTACGCAGATCGTTTCTGTCGTCa < 1:1439313/139‑1 (MQ=255) ggTCACTATTGCCTGATGCCACTGGCGGCGGAAGGGCATA‑TTTTGGTGGCTGTGAATTTATTCGTTATGACGATCGCCCCTGGAGCGaaa > 1:669348/1‑90 (MQ=255) ggTCACTATTGCCTGATGCCACTGGCGGCGGAAGGGCATA‑TTTTGGTGGCTGTGAATTTATTCGTTATGACGATCGCCCCTGGAGCGaaa < 2:669348/90‑1 (MQ=255) ggTCACTATTGCCTGATGCCACTGGCGGCGGAAGGGCATA‑TTTTGGTGGCTGTGAATTTATTCGTTATGACGATCGCCCCTGGAGCGAAAAAGAGTTCAATCGTCTGCAAACATTTACGCAGATCGTTTCTGTCGTCAc < 1:684301/139‑1 (MQ=255) ccTGATGCCACTGGCGGCGGAAGGGCATA‑TTTTGGTGGCTGTGAATTTATTCGTTATGACGAt < 1:257044/63‑1 (MQ=255) ccTGATGCCACTGGCGGCGGAAGGGCATA‑TTTTGGTGGCTGTGAATTTATTCGTTATGACGAt > 2:257044/1‑63 (MQ=255) aTGCCACTGGCGGCGGAAGGGCATA‑TTTTGGTGGCTGTGAATTTATTCGTTATGACGATCGCCCCTGGAGCGAAAATGAGTTCAATCGTCTGCAAACATTTACGCAGATCGTTTCTGTCGTCACCGAACAAATCCagag > 2:1079146/1‑139 (MQ=255) tGCCACTGGCGGCGGAAGGGCATA‑TTTTGGTGGCTGTGAATTTATTCGTTATGACGATCGCCCCTGGAGCGAAAAAGAGTTCAATCGTCTGCAAACATTTACGCAGATCGTTTCTGTCGTCACCGAACAAATCCAGAGc > 2:1057023/1‑139 (MQ=255) gCCACTGGCGGCGGAAGGGCATA‑TTTTGGTGGCTGTGAATTTATTCGTTATGACGATCGCCCCTGGAGCGAAAAAGAGTTCAATCGTCTGCAAACATTTACGCAGATCGTTTCTGTCGTCACCGAACAAATCCAGAGcc < 2:1361795/139‑1 (MQ=255) ccACTGGCGGCGGAAGGGCATA‑TTTTGGTGGCTGTGAATTTATTCGTTATGACGATCGCCCCTGGAGCGAAAAAGAGTTCAATCGTCTGCAAACATTTACGCAGATCGTTTCTGTCGTCACCGAACAAATCCAGAGCcg > 1:386756/1‑139 (MQ=255) | TTTTGTCGCGCCCTGATACGCTGCATTGCAGTTACGAAGAATTTTGTGAAACCTGGCCGCAGCTGGACGCAGGTGGGCTATACCCAAAATTTGGTCACTATTGCCTGATGCCACTGGCGGCGGAAGGGCATATTTTTGGTGGCTGTGAATTTATTCGTTATGACGATCGCCCCTGGAGCGAAAAAGAGTTCAATCGTCTGCAAACATTTACGCAGATCGTTTCTGTCGTCACCGAACAAATCCAGAGCCG > NC_000913/2854597‑2854846 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |