Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,815,947	Δ1 bp	pseudogene (603/669 nt)	rph ←	ribonuclease PH (defective),enzyme, Degradation of RNA, RNase PH

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,815,944	0	C	.	100.0%	245.8 / NA	60	pseudogene (606/669 nt)	rph	ribonuclease PH (defective),enzyme, Degradation of RNA, RNase PH
Reads supporting (aligned to +/- strand):  ref base C (0/0);  new base . (31/29);  total (31/29)

AAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGATTCCCCTCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTCACAATTCCGACAGAAACTGCGGCTACC  >  NC_000913/3815807‑3816076                                                                                                                                          |                                                                                                                                     aaGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGTTACAATGGATTCGATTCCCCTCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTcc                                                                                                                                     <  1:153616/139‑1 (MQ=255)    gCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGTTACAATGGATTCGATTCCCCTCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTccctg                                                                                                                                  <  1:502939/139‑3 (MQ=255)      gACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGTTACAATGGATTCGATTCCCCTCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTccctgca                                                                                                                                >  1:1043802/1‑135 (MQ=255)               gTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGTTACAATGGATTCGATTCCCCTCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGT‑CCCTGCACTTCAatga                                                                                                                      >  1:1169727/1‑139 (MQ=255)                   ccTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGTTACAATGGATTCGATTCCCCTCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTccct                                                                                                                                   >  1:576895/1‑122 (MQ=255)                   ccTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGTTACAATGGATTCGATTCCCCTCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTccct                                                                                                                                   <  2:576895/123‑2 (MQ=255)                            tCAGTTTGCCAGCGCCGCCTTCTGCGTCGTTACAATGGATTCGATTCCCCTCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTccctg                                                                                                                                  >  1:287145/1‑113 (MQ=255)                            tCAGTTTGCCAGCGCCGCCTTCTGCGTCGTTACAATGGATTCGATTCCCCTCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTccctg                                                                                                                                  <  2:287145/115‑3 (MQ=255)                            tCAGTTTGCCAGCGCCGCCTTCTGCGTCGTTACAATGGATTCGATTCCCCTCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGT‑CCCTGCACTTCAATGATGCGCCCGTCTTc                                                                                                         <  2:1169727/139‑1 (MQ=255)                                  tGCCAGCGCCGCCTTCTGCGTCGTTACAATGGATTCGATTCCCCTCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGT‑CCCTGCACTTCAATGATgcg                                                                                                                  >  2:139098/1‑124 (MQ=255)                                  tGCCAGCGCCGCCTTCTGCGTCGTTACAATGGATTCGATTCCCCTCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGT‑CCCTGCACTTCAATGATgcg                                                                                                                  <  1:139098/124‑1 (MQ=255)                                             ccTTCTGCGTCGTTACAATGGATTCGATTCCCCTCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGT‑CCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCa                                                                                        >  1:230735/1‑139 (MQ=255)                                                         ttACAATGGATTCGATTCCCCTCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTccctg                                                                                                                                  <  1:687604/85‑3 (MQ=255)                                                         ttACAATGGATTCGATTCCCCTCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTccctg                                                                                                                                  >  2:687604/2‑84 (MQ=255)                                                           aCAATGGATTCGATTCCCCTCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGT‑CCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCg                                                                          <  2:1043802/139‑1 (MQ=255)                                                              aTGGATTCGATTCCCCTCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGT‑CCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCa                                                                       <  2:930584/139‑1 (MQ=255)                                                                 gattcgattcCCCTCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTccc                                                                                                                                    >  1:1020031/1‑76 (MQ=255)                                                                 gattcgattcCCCTCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTccc                                                                                                                                    >  2:245379/1‑76 (MQ=255)                                                                 gattcgattcCCCTCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTccc                                                                                                                                    <  2:1020031/76‑1 (MQ=255)                                                                 gattcgattcCCCTCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTccc                                                                                                                                    <  1:245379/76‑1 (MQ=255)                                                                    tcgattcCCCTCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGT‑CCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCt                                                                 >  1:1215929/1‑139 (MQ=255)                                                                    tcgattcCCCTCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGT‑CCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCt                                                                 >  1:737367/1‑139 (MQ=255)                                                                    tcgattcCCCTCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGT‑CCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCt                                                                 >  1:403704/1‑139 (MQ=255)                                                                        ttcCCCTCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGT‑CCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGtct                                                                               <  2:1414578/121‑1 (MQ=255)                                                                        ttcCCCTCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGT‑CCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGtct                                                                               >  1:1414578/1‑121 (MQ=255)                                                                           cccTCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTcc                                                                                                                                     <  1:597695/65‑1 (MQ=255)                                                                           cccTCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTcc                                                                                                                                     >  2:597695/1‑65 (MQ=255)                                                                                gggCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTccctg                                                                                                                                  >  2:1050916/1‑61 (MQ=255)                                                                                gggCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTccctg                                                                                                                                  <  1:1050916/63‑3 (MQ=255)                                                                                     agagCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGT‑CCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCa                                                              >  1:1370054/1‑125 (MQ=255)                                                                                     agagCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGT‑CCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCa                                                              <  2:1370054/125‑1 (MQ=255)                                                                                       agCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGT‑CCCTGCTCTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCtt                                                                <  2:982572/121‑1 (MQ=255)                                                                                       agCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGT‑CCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCtt                                                                >  1:982572/1‑121 (MQ=255)                                                                                       agCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGT‑CCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTcc                                                     >  1:266027/1‑132 (MQ=255)                                                                                       agCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGT‑CCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTcc                                                     <  2:266027/132‑1 (MQ=255)                                                                                        gCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGT‑CCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCa                                             <  2:1215929/139‑1 (MQ=255)                                                                                        gCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGT‑CCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCa                                             <  2:403704/139‑1 (MQ=255)                                                                                            acaaGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTccctg                                                                                                                                  >  1:783658/1‑49 (MQ=255)                                                                                            acaaGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTccctg                                                                                                                                  <  2:783658/51‑3 (MQ=255)                                                                                            acaaGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTccct                                                                                                                                   <  1:231501/50‑2 (MQ=255)                                                                                            acaaGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTccct                                                                                                                                   >  2:231501/1‑49 (MQ=255)                                                                                                 aTGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTccctg                                                                                                                                  <  1:623050/46‑3 (MQ=255)                                                                                                 aTGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTccctg                                                                                                                                  >  2:623050/1‑44 (MQ=255)                                                                                                  tGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGT‑CCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCg                                   <  2:737367/139‑1 (MQ=255)                                                                                                       aGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGT‑CCCTGCACTTCAATGATGCGCCCGTCt                                                                                                           <  2:797428/62‑1 (MQ=255)                                                                                                       aGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGT‑CCCTGCACTTCAATGATGCGCCCGTCt                                                                                                           >  1:797428/1‑62 (MQ=255)                                                                                                        gCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGT‑CCCTGCACTTCAATGATGCGCCCATCTTCGGTCATCACt                                                                                               >  2:642525/1‑73 (MQ=255)                                                                                                        gCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGT‑CCCTGCACTTCAATGATGCGCCCATCTTCGGTCATCACt                                                                                               <  1:642525/73‑1 (MQ=255)                                                                                                          tctTCATGGGTGAACGGCTCGCCTTCTGCCGTccctg                                                                                                                                  >  2:292349/1‑35 (MQ=255)                                                                                                          tctTCATGGGTGAACGGCTCGCCTTCTGCCGTccctg                                                                                                                                  <  1:292349/37‑3 (MQ=255)                                                                                                           ctTCATGGGTGAACGGCTCGCCTTCTGCCGT‑CCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTcaca                          >  1:646364/1‑139 (MQ=255)                                                                                                            ttCATGGGTGAACGGCTCGCCTTCTGCCGT‑CCCTGCACTTCAATGATGCGCCCGTCTTCGGtca                                                                                                    >  1:288663/1‑64 (MQ=255)                                                                                                            ttCATGGGTGAACGGCTCGCCTTCTGCCGT‑CCCTGCACTTCAATGATGCGCCCGTCTTCGGtca                                                                                                    <  2:288663/64‑1 (MQ=255)                                                                                                                    tGAACGGCTCGCCTTCTGCCGT‑CCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCa                                                                       <  2:1187290/85‑1 (MQ=255)                                                                                                                    tGAACGGCTCGCCTTCTGCCGT‑CCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCa                                                                       >  1:1187290/1‑85 (MQ=255)                                                                                                                      aaCGGCTCGCCTTCTGCCGT‑CCCTGCACTTCAATGATgcgc                                                                                                                 <  1:273632/41‑1 (MQ=255)                                                                                                                      aaCGGCTCGCCTTCTGCCGT‑CCCTGCACTTCAATGATgcgc                                                                                                                 <  2:385322/41‑1 (MQ=255)                                                                                                                      aaCGGCTCGCCTTCTGCCGT‑CCCTGCACTTCAATGATgcgc                                                                                                                 >  1:385322/1‑41 (MQ=255)                                                                                                                      aaCGGCTCGCCTTCTGCCGT‑CCCTGCACTTCAATGATgcgc                                                                                                                 >  2:273632/1‑41 (MQ=255)                                                                                                                      aaCGGCTCGCCTTCTGCCGT‑CCCTGCACTTCAATGATgcg                                                                                                                  >  2:585126/1‑40 (MQ=255)                                                                                                                      aaCGGCTCGCCTTCTGCCGT‑CCCTGCACTTCAATGATgcg                                                                                                                  <  1:585126/40‑1 (MQ=255)                                                                                                                      aaCGGCTCGCCTTCTGCCGT‑CCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGt                                                                                 <  1:1106089/73‑1 (MQ=255)                                                                                                                      aaCGGCTCGCCTTCTGCCGT‑CCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGt                                                                                 >  2:1106089/1‑73 (MQ=255)                                                                                                                      aaCGGCTCGCCTTCTGCCGT‑CCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTCACAATTCCGACAGa               >  2:1443234/1‑139 (MQ=255)                                                                                                                         ggCTCGCCTTCTGCCGT‑CCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCa                                                                       >  1:679042/1‑80 (MQ=255)                                                                                                                         ggCTCGCCTTCTGCCGT‑CCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCa                                                                       <  2:679042/80‑1 (MQ=255)                                                                                                                          gCTCGCCTTCTGCCGT‑CCCTGCACTTCAATGATgcgc                                                                                                                 <  1:1403474/37‑1 (MQ=255)                                                                                                                          gCTCGCCTTCTGCCGT‑CCCTGCACTTCAATGATgcgc                                                                                                                 >  2:1403474/1‑37 (MQ=255)                                                                                                                           gtCGCCTTCTGCCGT‑CCCTGCACTTCAATGATGCGCCCGTCATCGGTCATCAc                                                                                                >  1:926835/2‑53 (MQ=255)                                                                                                                           cTCGCCTTCTGCCGT‑CCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCAc                                                                                                <  2:926835/53‑1 (MQ=255)                                                                                                                           cTCGCCTTCTGCCGT‑CCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCAc                                                                                                >  2:1301009/1‑53 (MQ=255)                                                                                                                           cTCGCCTTCTGCCGT‑CCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCAc                                                                                                <  1:1301009/53‑1 (MQ=255)                                                                                                                           cTCGCCTTCTGCCGT‑CCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCaga                                                                     >  1:693552/1‑80 (MQ=255)                                                                                                                           cTCGCCTTCTGCCGT‑CCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCaga                                                                     <  2:693552/80‑1 (MQ=255)                                                                                                                           cTCGCCTTCTGCCGT‑CCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCa                                                              <  2:201892/87‑1 (MQ=255)                                                                                                                           cTCGCCTTCTGCCGT‑CCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCa                                                              >  1:201892/1‑87 (MQ=255)                                                                                                                             cGCCTTCTGCCGT‑CCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTCACAATTCCGACAGAAACTGCg        >  2:853123/1‑139 (MQ=255)                                                                                                                             cGCCTTCTGCCGT‑CCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTCACAATTCCGACAGAAACTGCg        <  1:853123/139‑1 (MQ=255)                                                                                                                                 ttCTGCCGT‑CCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTCACAATTCCGACAGAAACTGCGGCTa    <  2:230735/139‑1 (MQ=255)                                                                                                                                   cTGCCGT‑CCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCa                                                                       >  1:1267597/1‑70 (MQ=255)                                                                                                                                   cTGCCGT‑CCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCa                                                                       <  2:1267597/70‑1 (MQ=255)                                                                                                                                   cTGCCGT‑CCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTCACAATTCCGACAGAAACTGCGGCTAcc  >  1:427998/1‑139 (MQ=255)                                                                                                                                   cTGCCGT‑CCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTCACAATTCCGACAGAAACTGCGGCTAcc  >  2:390306/1‑139 (MQ=255)                                                                                                                                    tGCCGT‑CCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAAc                                                            <  1:2397/80‑1 (MQ=255)                                                                                                                                    tGCCGT‑CCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAAc                                                            >  2:2397/1‑80 (MQ=255)                                                                                                                                          |                                                                                                                                     AAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGATTCCCCTCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTCACAATTCCGACAGAAACTGCGGCTACC  >  NC_000913/3815807‑3816076

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑