| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1323147 | 43 (0.750) | 15 (0.260) | 7/202 | 4.5 | 40.5% | intergenic (‑65/‑73) | trpL/yciV | trp operon leader peptide/PHP domain protein |
| ? | NC_000913 | = 3742633 | 1 (0.020) | intergenic (‑101/‑100) | yiaJ/yiaK | transcriptional repressor for the yiaKLMNO‑lyxK‑sgbHUE operon/2,3‑diketo‑L‑gulonate reductase, NADH‑dependent | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
GTTCGATGATTAATTGTCAACAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/1323125‑1323147‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GATTGATGAATTTCAAAAGACATAAAAATCAATTGGTTATAAATTATCTGTCGAGATCGTGAACTACGGCACACTTTGCGCTACCATCAGGACGCGACAAAATGGGGAAAGAAGTGATGGGAAAAAAAGAGAA < NC_000913/3742633‑3742501 tgcCGATGATTAATTGTCAACAGGATTGATGAATTTCAAAA > 1:674450/4‑41tgcCGATGATTAATTGTCAACAGGATTGATGAATTTCAAAA < 2:674450/38‑1tgcCGATGAGTAATTGTCAACAGGATTGATGAATTTCAAAAGACATAAAAATCAATT‑GTTATAAATTATCTGTCGAGATCGTGAACTACGGCACACTTTGCGCTACCATCAGGACGCGACAAAATGGGGAAAGAAGTGA > 1:1012900/4‑139 gcCGATGATTAATTGTCAACAGGATTGATGAATTTCAAAAGACATAAAAATCAATT‑GTTATAAATTATCTGTCGAGATCGTGAACTACGGCACACTTTGCGCTACCATCAGGACGCGACAAAATGGGGAAAGAAGTGAT < 2:1012900/137‑1 ATGATTAATTGTCAACAGGATTGATGAATTTCAAAAGACATAAAAATCAATT‑GTTATAAATTATCTGTCGAGATCGTGAACTACGGCACTCTTTGCGC > 1:451296/1‑98 ATGATTAATTGTCAACAGGATTGATGAATTTCAAAAGACATAAAAATCAATT‑GTTATAAATTATCTGTCGAGATCGTGAACTACGGCACTCTTTGCGC < 2:451296/98‑1 ATGATTAATTGTCAACAGGATTGATGAATTTCAAAAGACATAAAAATCAATT‑GTTATAAATTATCTGTCGAGATCGTGAACTACGGCACA > 1:1486526/1‑90 ATGATTAATTGTCAACAGGATTGATGAATTTCAAAAGACATAAAAATCAATT‑GTTATAAATTATCTGTCGAGATCGTGAACTACGGCACA < 1:382053/90‑1 ATGATTAATTGTCAACAGGATTGATGAATTTCAAAAGACATAAAAATCAATT‑GTTATAAATTATCTGTCGAGATCGTGAACTACGGCACA < 2:1486526/90‑1 ATGATTAATTGTCAACAGGATTGATGAATTTCAAAAGACATAAAAATCAATT‑GTTATAAATTATCTGTCGAGATCGTGAACTACGGCACA > 2:382053/1‑90 ATGATTAATTGTCAACAGGATTGATGAATTTCAAAAGACATAAAAATCAATT‑GTTATAAATTATCTGTAGAGATCGTGAACTACGGCACACTTTGCGCTACCATCAGGACGCGACAAAATGGGGAAAGAAGTGATGGGA > 2:930327/1‑139 ATGATTAATTGTCAACAGGATTGATGAATTTCAAAAGACATAAAAATC > 1:521920/1‑48 ATGATTAATTGTCAACAGGATTGATGAATTTCAAAAGACATAAAAATC < 2:521920/48‑1 AATTGTCAACAGGATTGATGAATTTCAAAAGACATAAAAATCAATT‑GTTATAAATTATCTGTCGAGATCGTGAACTACGGCACACTTTGCGCTACCATCAGGACGCGACAAAATGGGGAAAGAAGTGATGGGAAAAAAA < 1:524180/139‑1 TCAACAGGATTGATGAATTTCAAAAGACATAAAAATCAATT‑GTTATAAATTATCTGTCGAGATCGTGAACTACGGCACACTTTGCGCTACCATCAGGACGCGACAAAATGGGGAAAGAAGTGATGGGAAAAAAAGAGAA > 2:462892/1‑139 GTTCGATGATTAATTGTCAACAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/1323125‑1323147‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GATTGATGAATTTCAAAAGACATAAAAATCAATTGGTTATAAATTATCTGTCGAGATCGTGAACTACGGCACACTTTGCGCTACCATCAGGACGCGACAAAATGGGGAAAGAAGTGATGGGAAAAAAAGAGAA < NC_000913/3742633‑3742501 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |