| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 357476 = | NA (NA) | 33 (0.580) +C |
17/200 | 2.2 | 41.5% | intergenic (+22/+315) | codA/cynR | cytosine/isoguanine deaminase/transcriptional activator of cyn operon, autorepressor |
| ? | NC_000913 | = 357874 | 47 (0.820) | coding (817/900 nt) | cynR | transcriptional activator of cyn operon, autorepressor | |||||
CGTCAGGTTCCGGTACGTTATTCGGTACGTGGCGGCAAGGTGATTGCCAGCACACAACCGGCACAAACCACCGTATATCTGGAGCAGCCAGAAGCCATCGATTACAAACGTTGAACGACTGGGTTACAGCGAGCTTAGTTTATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGTAGAGCACTGAACTCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCTGATCTGTGTCAGCGGCTACCGTGATTCATTC > NC_000913/357341‑357606 | cGTCAGGTTCCGGTACGTTATTCGGTACGTGGCGGCAAGGTGATTGCCAGCACACAACCGGCACAAACCACCGTATATCTGGAGCAGCCAGAAGCCATCGATTACAAACGTTGAACGACTGGGTTACAGCGAGCTTAGt < 2:1215837/139‑1 (MQ=255) cgtagcgcttcaggcaattccagccgctgatctgtgtcagcggttaccgtgattcatttccgccaacaaccgcgcatttatccaacgccatgtgcaaaaatgccttcgcagcggctgtctgccagctgTAGTTTATGcc < 1:1110885‑M1/11‑1 (MQ=255) cgtagcgcatcaggcaattccagccgctgatctgtgtcagcggttaccgtgattcatttccgccaacaaccgcgcatttatccaacgccatgtgcaaaaatgccttcgcagcggctgtctgccagctgTAGTTTATGcc < 2:649485‑M1/11‑1 (MQ=255) tagcgcatcaggcaattccagccgctgatctgtgtcagcggttaccgtgattcatttccgccaacaaccgcgcatttatccaacgccatgtgcaaaaatgccttcgcagcggctgtctgccagctgTAGt > 1:721170‑M1/127‑130 (MQ=255) tagcgcatcaggcaattccagccgctgatctgtgtcagcggttaccgtgattcatttccgccaacaaccgcgcatttatccaacgccatgtgcaaaaatgccttcgcagcggctgtctgccagctgTAGt < 2:721170‑M1/4‑1 (MQ=255) gcgcatcaggcaattccagccgctgatctgtgtcagcggttaccgtgattcatttccgccaacaaccgcgcatttatccaacgccatgtgcaaaaatgccttcgcagcggctgtctgccagctgTAGTTTATGCCGGAt > 2:842973‑M1/125‑139 (MQ=255) cgcatcaggcaattccagccgctgatctgtgtcagcggttaccgtgattcatttccgccaacaaccgcgcatttatccaacgccatgtgcaaaaatgccttcgcagcggctgtctgccagctgTAGTTTATGCCGGAt > 2:237044‑M1/124‑138 (MQ=255) cgcatcaggcaattccagccgctgatctgtgtcagcggttaccgtgattcatttccgccaacaaccgcgcatttatccaacgccatgtgcaaaaatgccttcgcagcggctgtctgccagctgTAGTTTATGCCGGAt < 1:237044‑M1/15‑1 (MQ=255) ttCGGTACGTGGCGGCAAGGTGATTGCCAGCACACAACCGGCACAAACCACCGTATATCTGGAGCAGCCAGAAGCCATCGATTACAAACGTTGAACGACTGGGTTACAGCGAGCTTAGTTTATGCCGGATGCGGCGTGa > 1:319175/1‑139 (MQ=255) gccgctgatctgtgtcagcggttaccgtgattcatttccgccaacaaccgcgcatttatccaacgccatgtgcaaaaatgccttcgcagcggctgtctgccagctgTAGTTTATGCCGGATGCGGCGTGAACGCCTTAt > 1:649485‑M1/107‑139 (MQ=255) gcggcAAGGTGATTGCCAGCACACAACCGGCACAAACCACCGTATATCTGGAGCAGCCAGAAGCCATCGATTACAAACGTTGAACGACTGGGTTACAGCGAGCTTAGTTTATGCCGGATGCGGCGTGAACGCCTTATcc < 2:529177/139‑1 (MQ=255) cggcAAGGTGATTGCCAGCACACAACCGGCACAAACCACCGTATATCTGGAGCAGCCAGAAGCCATCGATTACAAACGTTGAACGACTGGGTTACAGCGAGCTTAGTTTATGCCGGATGCGGCGTGAACGCCTTATCCg > 2:471323/1‑139 (MQ=255) tgatctgtgtcagcggttaccgtgattgatttccgccaacaaccgcgcatttatccaacgccatgtgcaaaaatgccttcgcagcggctgtctgccagctgTAGTTTATGCCGCATGCGGCGTGAACGCCTTATCCGGc < 1:974924‑M1/38‑1 (MQ=255) gcggttaccgtgattcatttccgccaacaaccgcgcatttatccaacgccatgtgcaaaaatgccttcgcagcggctgtctgccagctgTAGTTTATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGTAGAGCa > 2:586347‑M1/90‑139 (MQ=255) gcggttaccgtgattcatttccgccaacaaccgcgcatttatccaacgccatgtgcaaaaatgccttcgcagcggctgtctgccagctgTAGTTTATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGTAGAGCa < 2:769941‑M1/50‑1 (MQ=255) gcggttaccgtgattcatttccgccaacaaccgcgcatttatccaacgccatgtgcaaaaatgccttcgcagcggctgtctgccagctgTAGTTTATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGTAGAGCa < 1:542207‑M1/50‑1 (MQ=255) cggttaccgtgattcatttccgccaacaaccgcgcatttatccaacgccatgtgcaaaaatgccttcgcagcggctgtctgccagctgTAGTTTATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGTAGAGCAc < 1:11479‑M1/51‑1 (MQ=255) ggttaccgtgattcatttccgccaacaaccgcgcatttatccaacgccatgtgcaaaaatgccttcgcagcggctgtctgccagctgTAGTTTATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGTAGAGCACt > 2:489251‑M1/88‑139 (MQ=255) ggttaccgtgattcatttccgccaacaaccgcgcatttatccaacgccatgtgcaaaaatgccttcgcagcggctgtctgccagctgTAGTTTATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGTAGAGCACt < 1:489251‑M1/52‑1 (MQ=255) aGCACACAACCGGCACAAACCACCGTATATCTGGAGCAGCCAGAAGCCATCGATTACAAACGTTGAACGACTGGGTTACAGCGAGCTTAGTTTATGCCGGATGCGGCGTGAACGCCTTAt < 1:1139485/120‑1 (MQ=255) aGCACACAACCGGCACAAACCACCGTATATCTGGAGCAGCCAGAAGCCATCGATTACAAACGTTGAACGACTGGGTTACAGCGAGCTTAGTTTATGCCGGATGCGGCGTGAACGCCTTAt > 2:1139485/1‑120 (MQ=255) aGCACACAACCGGCACAAACCACCGTATATCTGGAGCAGCCAGAAGCCATCGATTACAAACGTTGAACGACTGGGTTACAGCGAGCTTAGTTTATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGTAGAGCACt > 1:723135/1‑139 (MQ=255) gCACACAACCGGCACAAACCACCGTATATCTGGAGCAGCCAGAAGCCATCGATTACAAACGTTGAACGACTGGGTTACAGCGAGCTTAGTTTATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGTAGAGCACTg > 1:737090/1‑139 (MQ=255) taccgtgattcatttccgccaacaaccgcgcatttatccaacgccatgtgcaaaaatgccttcgcagcggctgtctgccagctgTAGTTTATGCCGGATGCGGCGTg < 1:1424209‑M1/23‑1 (MQ=255) taccgtgattcatttccgccaacaaccgcgcatttatccaacgccatgtgcaaaaatgccttcgcagcggctgtctgccagctgTAGTTTATGCCGGATGCGGCGTg > 2:1424209‑M1/85‑107 (MQ=255) taccgtgattcatttccgccaacaaccgcgcatttatccaacgccatgtgcaaaaatgccttcgcagcggctgtctgccagctgTAGTTTATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGTAGAGCACTGaa < 2:210264‑M1/55‑1 (MQ=255) gattcatttccgccaacaaccgcgcatttatccaacgccatgtgcaaaaatgccttcgcagcggctgtctgccagctgTAGTTTATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGTAGAGCACTGAACTCGTa > 2:11479‑M1/79‑139 (MQ=255) attcatttccgccaacaaccgcgcatttatccaacgccatgtgcaaaaatgccttcgcagcggctgtctgccagctgTAGTTTATGCCGGATGCGGCGTGAACGCCTTATCCGGc > 2:145179‑M1/78‑115 (MQ=255) attcatttccgccaacaaccgcgcatttatccaacgccatgtgcaaaaatgccttcgcagcggctgtctgccagctgTAGTTTATGCCGGATGCGGCGTGAACGCCTTATCCGGc < 1:145179‑M1/38‑1 (MQ=255) tcatttccgccaacaaccgcgcatttatccaacgccaggtgcttatatgccttcgcagcggctgtctaccagttgTATTTTATGCCGGATGCGGCGTGAACGACTTATCCGGCCTACGTAGAGCACTGAACTCGTAGGc < 2:573045‑M1/64‑1 (MQ=255) aaaCCACCGTATATCTGGAGCAGCCAGAAGCCATCGATTACAAACGTTGAACGACTGGGTTACAGCGAGCTTAGTTTATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGTAGAGCACTGAACTCGTAGGCCTGa < 2:737090/139‑1 (MQ=255) aaaCCACCGTATATCTGGAGCAGCCAGAAGCCATCGATTACAAACGTTGAACGACTGGGTTACAGCGAGCTTAGTTTATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGTAGAGCACTGAACTCGTAGGCCTGa < 2:723135/139‑1 (MQ=255) aaCCACCGTATATCTGGAGCAGCCAGAAGCCATCGATTACAAACGTTGAACGACTGGGTTACAGCGAGCTTAGTTTATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGTAGAGCACTGAACTCGTAGGCCTGAt < 1:471323/139‑1 (MQ=255) ccaacaaccgcgcatttatccaacgccatgtgcaaaaatgccttcgcagcggctgtctgccagctgTAGTTTATGCCGGATGCGGCGTGAACGCCTTAt > 2:1051703‑M1/67‑99 (MQ=255) ccaacaaccgcgcatttatccaacgccatgtgcaaaaatgccttcgcagcggctgtctgccagctgTAGTTTATGCCGGATGCGGCGTGAACGCCTTAt < 1:1051703‑M1/33‑1 (MQ=255) cGTATATCTGGAGCAGCCAGAAGCCATCGATTACAAACGTTGAACGACTGGGTTACAGCGAGCTTAGTTTATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGTAGAGCACTGAACTCGTAGGCCTGATAAGCGt > 2:522480/1‑139 (MQ=255) ccgcgcatttatccaacgccatgtgcaaaaatgccttcgcagcggctgtctgccagctgTAGTTTATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGTAGAGCACTGAACTCGTAGGCCTGATAAGCGTAgcgc < 2:921211‑M1/80‑1 (MQ=255) gcgcatttatccaacgccatgtgcaaaaatgccttcgcagcggctgtctgccagctgTAGTTTATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGTAGAGCACTGAACTCGTa > 1:1452854‑M1/58‑118 (MQ=255) gcgcatttatccaacgccatgtgcaaaaatgccttcgcagcggctgtccgccagctgTAGTTTATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGTAGAGCACTGAACTCGTa < 2:1452854‑M1/61‑1 (MQ=255) cgcatttatccaacgccatgtgcaaaaatgccttcgcagcggctgtctgccagctgTAGTTTATGCCGGATGCGGCGTGa < 1:422125‑M1/24‑1 (MQ=255) cgcatttatccaacgccatgtgcaaaaatgccttcgcagcggctgtctgccagctgTAGTTTATGCCGGATGCGGCGTGa > 2:422125‑M1/57‑80 (MQ=255) gAGCAGCCAGAAGCCATCGATTACAAACGTTGAACGACTGGGTTACAGCGAGCTTAGTTTATGCCGGATGCGGCGTGAACGCCTTAt > 1:828138/1‑87 (MQ=255) gAGCAGCCAGAAGCCATCGATTACAAACGTTGAACGACTGGGTTACAGCGAGCTTAGTTTATGCCGGATGCGGCGTGAACGCCTTAt < 2:828138/87‑1 (MQ=255) gAGCAGCCAGAAGCCATCGATTACAAACGTTGAACGACTGGGTTACAGCGAGCTTAGTTTATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGTAGAGCATTGAACTCGCAg < 2:874851/116‑1 (MQ=255) gAGCAGCCAGAAGCCATCGATTACAAACGTTGAACGACTGGGTTACAGCGAGCTTAGTTTATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGTAGAGCACTGAACTCGTAg > 1:874851/1‑116 (MQ=255) cagcCAGAAGCCATCGATTACAAACGTTGAACGACTGGGTTACAGCGAGCTTAGTTTATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGTAGAGCACTGAACTCGTAGGCCTGATAAGCGTAGCGCATCAGGCa > 1:515077/1‑139 (MQ=255) agcCAGAAGCCATCGATTACAAACGTTGAACGACTGGGTTACAGCGAGCTTAGTTTATGCCGGATGCGGCGTg > 1:1212853/1‑73 (MQ=255) agcCAGAAGCCATCGATTACAAACGTTGAACGACTGGGTTACAGCGAGCTTAGTTTATGCCGGATGCGGCGTg < 2:1212853/73‑1 (MQ=255) gcCAGAAGCCATCGATTACAAACGTTGAACGACTGGGTTACAGCGAGCTTAGTTTATGCCGGATGCGGCGTGAACGCCTTAt < 1:1035013/82‑1 (MQ=255) gcCAGAAGCCATCGATTACAAACGTTGAACGACTGGGTTACAGCGAGCTTAGTTTATGCCGGATGCGGCGTGAACGCCTTAt > 2:1035013/1‑82 (MQ=255) ccATCGATTACAAACGTTGAACGACTGGGTTACAGCGAGCTTAGTTTATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGTAGAGCACTGAACTCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCg < 1:522480/139‑1 (MQ=255) aCGTTGAACGACTGGGTTACAGCGAGCTTAGTTTATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGTAGAGCACTGAACTCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCTGATCTGTGTCa > 1:622629/1‑139 (MQ=255) ttGAACGACTGGGTTACAGCGAGCTTAGTTTATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGTAGAGCACTGAACTCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCTGATCTGTGTCAGCg < 2:515077/139‑1 (MQ=255) tGAACGACTGGGTTACAGCGAGCTTAGTTTATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGTAGAGCACTGAACTCg > 2:261565/1‑83 (MQ=255) tGAACGACTGGGTTACAGCGAGCTTAGTTTATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGTAGAGCACTGAACTCg < 1:261565/83‑1 (MQ=255) tGAACGACTGGGTTACAGCGAGCTTAGTTTATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGTAGAGCACTGAACTCGTAGGCCTGATAAGCGTAGCGCa > 1:61313/1‑105 (MQ=255) tGAACGACTGGGTTACAGCGAGCTTAGTTTATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGTAGAGCACTGAACTCGTAGGCCTGATAAGCGTAGCGCa < 2:61313/105‑1 (MQ=255) gAACGACTGGGTTACAGCGAGCTTAGTTTATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGTAGAGCACTGAACTCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCTGATCTGTGTCAGCggt > 1:586347/1‑138 (MQ=255) ggTTACAGCGAGCTTAGTTTATGCCGGATGCGGCGTGAACGCCTTAt > 2:729450/1‑47 (MQ=255) ggTTACAGCGAGCTTAGTTTATGCCGGATGCGGCGTGAACGCCTTAt < 1:729450/47‑1 (MQ=255) ggTTACAGCGAGCTTAGTTTATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGTAGAGCACTGAACTCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCTGAt > 2:393962/1‑117 (MQ=255) ggTTACAGCGAGCTTAGTTTATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGTAGAGCACTGAACTCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCTGAt < 1:393962/117‑1 (MQ=255) aGCGAGCTTAGTTTATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGTAGAGCACTGAACTCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCTGATCTGTGTCAGCGGTTACCGTGattcattt < 2:622629/139‑2 (MQ=255) gctgTAGTTTATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGTAGAGCACTGAACTCGTAGGCCTGAt < 1:430191‑M1/69‑1 (MQ=255) gctgTAGTTTATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGTAGAGCACTGAACTCGTAGGCCTGAt > 2:430191‑M1/5‑73 (MQ=255) aGCTTAGTTTATGCCGGATGCGGCGTGAACGCCTTAt > 2:1283871/1‑37 (MQ=33) aGCTTAGTTTATGCCGGATGCGGCGTGAACGCCTTAt < 1:1283871/37‑1 (MQ=33) aGCTTAGTTTATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGTAGAGCACTGAACTCGTa < 1:297791/65‑1 (MQ=37) aGCTTAGTTTATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGTAGAGCACTGAACTCGTa > 2:297791/1‑65 (MQ=37) aGCTTAGTTTATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGTAGAGCACTGAACTCGTAGGc < 1:1450191/68‑1 (MQ=37) aGCTTAGTTTATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGTAGAGCACTGAACTCGTAGGc > 2:1450191/1‑68 (MQ=37) aGCTTAGTTTATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGTAGAGCACTGAACTCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCTGATCTGTGTc < 2:520387/114‑1 (MQ=255) aGCTTAGTTTATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGTAGAGCACTGAACTCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCTGATCTGTGTc > 1:520387/1‑114 (MQ=255) tgTAGTTTATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGTAGAGCACTGAACTCGTa > 1:1441758‑M1/3‑63 (MQ=255) tgTAGTTTATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGTAGAGCACTGAACTCGTa < 2:1441758‑M1/61‑1 (MQ=255) cTTAGTTTATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGTag > 1:172589/1‑48 (MQ=35) cTTAGTTTATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGTag < 2:172589/48‑1 (MQ=35) | CGTCAGGTTCCGGTACGTTATTCGGTACGTGGCGGCAAGGTGATTGCCAGCACACAACCGGCACAAACCACCGTATATCTGGAGCAGCCAGAAGCCATCGATTACAAACGTTGAACGACTGGGTTACAGCGAGCTTAGTTTATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGTAGAGCACTGAACTCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCTGATCTGTGTCAGCGGCTACCGTGATTCATTC > NC_000913/357341‑357606 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |