New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 40600	58 (1.010)	3 (0.050)	3/196	6.2	5.1%	coding (1332/1515 nt)	caiT	putative transporter
	?	NC_000913	40604 =	56 (1.000)					coding (1328/1515 nt)	caiT	putative transporter
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

ACGAAGAACAGCGGGCATCCTCCGGCGATAATGGCGGTTTGAATCGGTTTCAGGCCGCCGAGCGCCAGCAGAACAATACCGATAATGCCAACCAGAATTGACCAACCGATACGCACCAGCAGAGGTGGTTCTTCACCATCGCGTACTTCGCGGCAAGTGGACATCGCCAGGGTATAAGAGCAGGCGTTAACCAGCGTAACGGTGGCAATAAAGCAGAGGATGAAGAAGCCCCACATGGTGGCGGTGCTGAGTGGCAGAGCGGCCC  >  NC_000913/40475‑40739                                                                                                                                  |                                                                                                                                        aCGAAGAACAGCGGGCATCCTCCGGCGATAATGGCGGTTTGAATCGGTTTCAGGCCGCCGAGCGCCAGCAGAACAATACCGATAATGCCAACCAGAATTGACCAACCGATACGCACCAGCAGAGGTGGTTCTTCACCAt                                                                                                                                >  1:808519/1‑139 (MQ=255)             gggCATCCTCCGGCGATAATGGCGGTTTGAATCGGTTTCAGGCCGCCGAGCGCCAGCAGAACAATACCGATAATGCCAACCAGAATTGACCAACCGATACGCACCAGCAGAGGTGGTTCTTCACCATCGCGTACTTcgc                                                                                                                    <  2:808519/139‑1 (MQ=255)                 aTCCTCCGGCGATAATGGCGGTTTGAATCGGTTTCAGGCCGCCGAGCGCCAGCAGAACAATACCGATAATGCCAACCAGAATTGACCAACCGATACGCACCAGCAGA‑GTGGTTCTTCACCATCGCGTACTTCGCGGCaa                                                                                                               >  2:339523/1‑139 (MQ=255)                       cGGCGATAATGGCGGTTTGAATCGGTTTCAGGCCGCCGAGCGCCAGCAGAACAATACCGATAATGCCAACCAGAATTGACCAACCGATACGCACCAGCAGA‑GTGGTTCTTCACCATCGCGTACTTCGCGGCAAGTGGAc                                                                                                         <  1:339523/139‑1 (MQ=255)                               aTGGCGGTTTGAATCGGTTTCAGGCCGCCGAGCGCCAGCAGAACAATACCGATAATGCCAACCAGAATTGACCAACCGATACGCACCAGCAGAGGTGGTTCTTCACCATCGCGTACTTCGCGGCAAGTGGACATCGCCa                                                                                                  <  2:1312044/139‑1 (MQ=255)                                      tttGAATCGGTTTCAGGCCGCCGAGCGCCAGCAGAACAATACCGATAATGCCAACCAGAATTGACCAACCGATACGCACCAGCAGAGGTGGTTCTTCACCATCGCGTACTTCGCGGCAAGTGGACATCGCCAGGGtata                                                                                           >  2:1115129/1‑139 (MQ=255)                                        tGAATCGGTTTCAGGCCGCCGAGCGCCAGCAGAACAATACCGATAATGCCAACCAGAATTGACCAACCGATACGCACCAGCAGA‑‑‑GGTTCTTCACCATCGCGTACTTCGCGGCAAGTGGACATCGCCa                                                                                                  <  2:388654/127‑1 (MQ=255)                                        tGAATCGGTTTCAGGCCGCCGAGCGCCAGCAGAACAATACCGATAATGCCAACCAGAATTGACCAACCGATACGCACCAGCAGA‑‑‑GGTTCTTCACCATCGCGTACTTCGCGGCAAGTGGACATCGCCa                                                                                                  >  1:388654/1‑127 (MQ=255)                                               gTTTCAGGCCGCCGAGCGCCAGCAGAACAATACCGATAATGCCAACCAGAATTGACCAACCGATACGCACCAGCAGAGGTGGTTCTTCACCATCGCGTACTTCGCGGCAAGTg                                                                                                            >  2:410009/1‑113 (MQ=255)                                               gTTTCAGGCCGCCGAGCGCCAGCAGAACAATACCGATAATGCCAACCAGAATTGACCAACCGATACGCACCAGCAGAGGTGGTTCTTCACCATCGCGTACTTCGCGGCAAGTg                                                                                                            <  1:410009/113‑1 (MQ=255)                                                          ccgAGCGCCAGCAGAACAATACCGATAATGCCAACCAGAATTGACCAACCGATACGCACCAGCAGAGGTGGTTCTTCACCATCGCGTACTTCGCGGCAAGTGGACATCGc                                                                                                    >  1:1168695/1‑110 (MQ=255)                                                          ccgAGCGCCAGCAGAACAATACCGATAATGCCAACCAGAATTGACCAACCGATACGCACCAGCAGAGGTGGTTCTTCACCATCGCGTACTTCGCGGCAAGTGGACATCGc                                                                                                    <  2:1168695/110‑1 (MQ=255)                                                                 ccAGCAGAACAATACCGATAATGCCAACCAGAATTGACCAACCGATACGCACCAGCAGAGGTGGTTCTTCACCATCGCGTACTTCGCGGCAAGTGGACATCGCCAGGGTATAAGAGCAGGCGTTAACCAGCGTAACGGt                                                                <  1:425473/139‑1 (MQ=255)                                                                 ccAGCAGAACAATACCGATAATGCCAACCAGAATTGACCAACCGATACGCACCAGCAGAGGTGGTTCTTCACCATCGCGTACTTCGCGGCAAGTGGACATCGCCAGGGTATAAGAGCAGGCGTTAACCAGCGTAACGGt                                                                <  1:485176/139‑1 (MQ=255)                                                                      agAACAATACCGATAATGCCAACCAGAATTGACCAACCGATACGCACCAGCAGAGGTGGTTCTTCACCATCGCGTACTTCGCGGCAAGTGGACATCGCCAGGGTATAAGAGCAGGCGTTAACCAGCGTAACGGTGGCaa                                                           <  1:1439102/139‑1 (MQ=255)                                                                       gAACAATACCGATAATGCCAACCAGAATTGACCAACCGATACGCACCAGCA‑‑‑‑‑‑GTTCTTCACCATCGCGTACTTCGCGGCAAGTGGACATCGCCAGGGTATAAGAGCAGGCGTTAACCAGCGTAACGGTGGCAATAAAGCa                                                    <  2:374332/139‑1 (MQ=255)                                                                            aTACCGATAATGCCAACCAGAATTGACCAACCGATACGCACCAGCAGAGGTGGTTCTTCACCATCGCGTACTTCGCGGCAAGTGGACATCGCCAGGGTATAAGAGCAGGCGTTAACCAGCGTAACGGTGGCAATAAAGc                                                     >  2:246614/1‑139 (MQ=255)                                                                               ccGATAATGCCAACCAGAATTGACCAACCGATACGCACCAGCAGAGGTGGTTCTTCACCATcgcg                                                                                                                            <  1:1342838/65‑1 (MQ=255)                                                                               ccGATAATGCCAACCAGAATTGACCAACCGATACGCACCAGCAGAGGTGGTTCTTCACCATcgcg                                                                                                                            >  2:1342838/1‑65 (MQ=255)                                                                                  aTAATGCCAACCAGAATTGACCAACCGATACGCACCAGCAGAGGTGGTTCTTCACCATCGCGTACTTCGCGGc                                                                                                                 >  1:364995/1‑73 (MQ=255)                                                                                  aTAATGCCAACCAGAATTGACCAACCGATACGCACCAGCAGAGGTGGTTCTTCACCATCGCGTACTTCGCGGc                                                                                                                 <  2:364995/73‑1 (MQ=255)                                                                                     aTGCCAACCAGAATTGACCAACCGATACGCACCAGCAGAGGTGGTTCTTCACCATCGCGTACTTCGCGGCAAGTGGACATCGCCAg                                                                                                 <  2:1347979/86‑1 (MQ=255)                                                                                     aTGCCAACCAGAATTGACCAACCGATACGCACCAGCAGAGGTGGTTCTTCACCATCGCGTACTTCGCGGCAAGTGGACATCGCCAg                                                                                                 >  1:1347979/1‑86 (MQ=255)                                                                                       gCCAACCAGAATTGACCAACCGATACGCACCAGCAGAGGTGGTTCTTCACCATCGCGTACTTCGCGGCAAGTGGACATCGCCa                                                                                                  >  2:1410528/1‑83 (MQ=255)                                                                                       gCCAACCAGAATTGACCAACCGATACGCACCAGCAGAGGTGGTTCTTCACCATCGCGTACTTCGCGGCAAGTGGACATCGCCa                                                                                                  <  1:1410528/83‑1 (MQ=255)                                                                                          aaCCAGAATTGACCAACCGATACGCACCAGCAGAGGTGGTTCTTCAcc                                                                                                                                  >  1:1201333/1‑48 (MQ=255)                                                                                          aaCCAGAATTGACCAACCGATACGCACCAGCAGAGGTGGTTCTTCAcc                                                                                                                                  <  2:1201333/48‑1 (MQ=255)                                                                                          aaCCAGAATTGACCAACCGATACGCACCAGCAGAGGTGGTTCTTCACCATCGCGTACTTCGCGGCAAGTGGACATCGCCAGGGTATAAGAGCAGGCGTTAACCAGCGTAACGGTGGCAATAAAGCAGAGGATGaagaag                                       <  1:236041/139‑1 (MQ=255)                                                                                            ccAGAATTGACCAACCGATACGCACCAGCAGAGGTGGTTCTTCACCATCGCGTACTTCGCGGCAAGTGGACATCGCCa                                                                                                  <  1:131697/78‑1 (MQ=255)                                                                                            ccAGAATTGACCAACCGATACGCACCAGCAGAGGTGGTTCTTCACCATCGCGTACTTCGCGGCAAGTGGACATCGCCa                                                                                                  >  2:131697/1‑78 (MQ=255)                                                                                            ccAGAATTGACCAACCGATACGCACCAGCAGA‑GTGGTTCTTCACCATCGCGTACtt                                                                                                                       <  2:732564/56‑1 (MQ=255)                                                                                            ccAGAATTGACCAACCGATACGCACCAGCAGA‑GTGGTTCTTCACCATCGCGTACtt                                                                                                                       >  1:732564/1‑56 (MQ=255)                                                                                                aaTTGACCAACCGATACGCACCAGCAGAGGTGGTTCTTCACCATCGCGTACTTcgc                                                                                                                    <  2:1132991/56‑1 (MQ=255)                                                                                                aaTTGACCAACCGATACGCACCAGCAGAGGTGGTTCTTCACCATCGCGTACTTcgc                                                                                                                    >  1:1132991/1‑56 (MQ=255)                                                                                                  ttGACCAACCGATACGCACCAGCAGAGGTGGTTCTTCACCATCGCGTACTTCGCGGCAAGTGGACATCGCCAGGGTATAAGAGCAGGCGTTAAc                                                                            >  1:458067/1‑94 (MQ=255)                                                                                                  ttGACCAACCGATACGCACCAGCAGAGGTGGTTCTTCACCATCGCGTACTTCGCGGCAAGTGGACATCGCCAGGGTATAAGAGCAGGCGTTAAc                                                                            <  2:458067/94‑1 (MQ=255)                                                                                                     aCCAACCGATACGCACCAGCAGAGGTGGTTCTTCACCATCGCGTACTTCGCGGCAAGTGGACATCGCCAGGGTATAAGAGCAGGCGTTAACCAGCGt                                                                      >  2:701231/1‑97 (MQ=255)                                                                                                     aCCAACCGATACGCACCAGCAGAGGTGGTTCTTCACCATCGCGTACTTCGCGGCAAGTGGACATCGCCAGGGTATAAGAGCAGGCGTTAACCAGCGt                                                                      <  1:701231/97‑1 (MQ=255)                                                                                                     aCCAACCGATACGCACCAGCAGAGGTGGTTCTTCACCATCGCGTACTTCGCGGCAAGTGGACATCGCCAGGGTATAAGAGCAGGCGTTAACCAGCGTAACGGTGGCAATAAAGCAGAGGATga                                            <  2:33034/123‑1 (MQ=255)                                                                                                     aCCAACCGATACGCACCAGCAGAGGTGGTTCTTCACCATCGCGTACTTCGCGGCAAGTGGACATCGCCAGGGTATAAGAGCAGGCGTTAACCAGCGTAACGGTGGCAATAAAGCAGAGGATga                                            >  1:33034/1‑123 (MQ=255)                                                                                                         aCCGATACGCACCAGCAGAGGTGGTTCTTCACCATCGCGTACTTCGCGGCAAGTGGACATCGCCAGGGTATAAGAGCAGGCGTTAACCAGCGTAACGGTGGCAATAAAGCa                                                    <  2:427890/111‑1 (MQ=255)                                                                                                         aCCGATACGCACCAGCAGAGGTGGTTCTTCACCATCGCGTACTTCGCGGCAAGTGGACATCGCCAGGGTATAAGAGCAGGCGTTAACCAGCGTAACGGTGGCAATAAAGCa                                                    >  1:427890/1‑111 (MQ=255)                                                                                                          ccGATACGCACCAGCAGAGGTGGTTCTTCACCATCGCGTACTTCGCGGCAAGTGGa                                                                                                          >  1:1344260/1‑56 (MQ=255)                                                                                                          ccGATACGCACCAGCAGAGGTGGTTCTTCACCATCGCGTACTTCGCGGCAAGTGGa                                                                                                          <  2:1344260/56‑1 (MQ=255)                                                                                                          ccGATACGCACCAGCAGAGGTGGTTCTTCACCATCGCGTACTTCGCGGCAAGTGGACATCGCCAGGGTATAAGAGCATGCGTTAACCAGCGTAACGGTGGCAATAAAGCAGAGGATGAAGAAGCCCCACATGGTGGCgg                       >  1:928557/1‑139 (MQ=255)                                                                                                          ccGATACGCACCAGCAGAGGTGGTTCTTCACCATCGCGTACTTCGCGGCAAGTGGACATCGCCAGGGTATAAGAGCAGGCGTTAACCAGCGTAACGGTGGCAATAAAg                                                      >  1:779079/1‑108 (MQ=255)                                                                                                          ccGATACGCACCAGCAGAGGTGGTTCTTCACCATCGCGTACTTCGCGGCAAGTGGACATCGCCAGGGTATAAGAGCAGGCGTTAACCAGCGTAACGGTGGCAATAAAg                                                      <  2:779079/108‑1 (MQ=255)                                                                                                               aCGCACCAGCAGAGGTGGTTCTTCACCATCGCGTACTTCGCGGCAAGTGGACATCGCCAGGGTATAAGAGCAGGCGTTAAc                                                                            <  1:478215/81‑1 (MQ=255)                                                                                                               aCGCACCAGCAGAGGTGGTTCTTCACCATCGCGTACTTCGCGGCAAGTGGACATCGCCAGGGTATAAGAGCAGGCGTTAAc                                                                            >  2:478215/1‑81 (MQ=255)                                                                                                               aCGCACCAGCAGAGGTGGTTCTTCACCATCGCGTACTTCGCGGCAAGTGGACATCGCCAGGGTATAAGAGCAGGCGTTAACCAGCGTAACGGTGGCAATAAAGCa                                                    <  2:806397/105‑1 (MQ=255)                                                                                                               aCGCACCAGCAGAGGTGGTTCTTCACCATCGCGTACTTCGCGGCAAGTGGACATCGCCAGGGTATAAGAGCAGGCGTTAACCAGCGTAACGGTGGCAATAAAGCa                                                    >  1:806397/1‑105 (MQ=255)                                                                                                                 gCACCAGCAGAGGTGGTTCTTCACCATCGCGTACTTCGCGGCAAGTGGACATCGCCAGGGTATAAGAGCAGGCGTTAACCAGCGTAATGGTGGCAATAAAGCAGAGGATGAAGAAGCCCCACATGGTGGCGGTGCTGAg                <  2:928557/139‑1 (MQ=255)                                                                                                                   aCCAGCAGAGGTGGTTCTTCACCATCGCGTACTTCGCGGCAAGTGGACATCGCCAGGGTATAAGAGCAGGCGTTAACCAGCGTAACGGTGGCAATAAAGCAGAGGATgaag                                          >  1:704191/1‑111 (MQ=255)                                                                                                                   aCCAGCAGAGGTGGTTCTTCACCATCGCGTACTTCGCGGCAAGTGGACATCGCCAGGGTATAAGAGCAGGCGTTAACCAGCGTAACGGTGGCAATAAAGCAGAGGATgaag                                          <  2:704191/111‑1 (MQ=255)                                                                                                                    ccAGCAGAGGTGGTTCTTCACCATCGCGTACTTCGCGGCAAGTGGACATCGCCAGGGTATAAGAGc                                                                                      <  1:190483/66‑1 (MQ=255)                                                                                                                    ccAGCAGAGGTGGTTCTTCACCATCGCGTACTTCGCGGCAAGTGGACATCGCCAGGGTATAAGAGc                                                                                      >  2:190483/1‑66 (MQ=255)                                                                                                                        cagAGGTGGTTCTTCACCATCGCGTACTTCGCGGCAAGTGGACATCGCCAGGGTATAAGAGCAGGCGTTAACCAGCGTAACGGTGGCAATAAAGCAGAGGATGAAGAAGCCCCACATGGTGGCGGTGCTGAGTGGCaga         >  2:1412614/1‑139 (MQ=255)                                                                                                                             gtggtTCTTCACCATCGCGTACTTCGCGGCAAGTGGACATCGCCAGGGTATAAGAGCAGGCGtt                                                                               <  1:617080/64‑1 (MQ=255)                                                                                                                             gtggtTCTTCACCATCGCGTACTTCGCGGCAAGTGGACATCGCCAGGGTATAAGAGCAGGCGtt                                                                               >  2:617080/1‑64 (MQ=255)                                                                                                                                 ttcttcACCATCGCGTACTTCGCGGCAAGTGGACATCGCCAGGGTATAAGAGCAGGCGTTAACCAGCGTAACGGTGGCAATAAAGCAGAGGATGAAGAAGCCCCACATGGTGGCGGTGCTGAGTGGCAGAGCGGccc  >  1:988652/1‑137 (MQ=255)                                                                                                                                 ttcttcACCATCGCGTACTTCGCGGCAAGTGGACATCGCCAGGGTATAAGAGCAGGCGTTAACCAGCGTAACGGTGGCAATAAAGCAGAGGATGAAGAAGCCCCACATGGTGGCGGTGCTGAGTGGCAGAGCGGccc  <  2:988652/137‑1 (MQ=255)                                                                                                                                  tcttcACCATCGCGTACTTCGCGGCAAGTGGACATCGCCAGGGTATAAGAGCAGGCGTTAAc                                                                            >  2:365002/1‑62 (MQ=255)                                                                                                                                  tcttcACCATCGCGTACTTCGCGGCAAGTGGACATCGCCAGGGTATAAGAGCAGGCGTTAAc                                                                            <  1:365002/62‑1 (MQ=255)                                                                                                                                  |                                                                                                                                        ACGAAGAACAGCGGGCATCCTCCGGCGATAATGGCGGTTTGAATCGGTTTCAGGCCGCCGAGCGCCAGCAGAACAATACCGATAATGCCAACCAGAATTGACCAACCGATACGCACCAGCAGAGGTGGTTCTTCACCATCGCGTACTTCGCGGCAAGTGGACATCGCCAGGGTATAAGAGCAGGCGTTAACCAGCGTAACGGTGGCAATAAAGCAGAGGATGAAGAAGCCCCACATGGTGGCGGTGCTGAGTGGCAGAGCGGCCC  >  NC_000913/40475‑40739

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.