| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 1207790 = | 46 (0.800) | 13 (0.270) | 13/170 | 2.3 | 22.3% | coding (290/630 nt) | stfP | e14 prophage, uncharacterized protein |
| ? | NC_000913 | 1209619 = | 52 (1.070) | pseudogene (1/501 nt) | stfE | pseudogene, e14 prophage, side tail fiber protein fragment family,Phage or Prophage Related | |||||
ATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGT‑GGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTA‑CCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAATGCGCTGAACTGTG > NC_000913/1209482‑1209757 | aTAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGT‑GGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACg > 1:62197/1‑139 (MQ=255) tttGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGT‑GGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGa < 1:540748/139‑1 (MQ=255) tGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGT‑GGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGaaa > 2:867045/1‑139 (MQ=255) tGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGT‑GGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGaaa > 1:44148/1‑139 (MQ=255) tCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGT‑GGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATgaaga > 2:670647/1‑139 (MQ=255) ggTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGT‑GGCTGAAGGCCACGGAACCGGGACTCCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGCTTATGAAAATGAAGAAATa > 2:782254/1‑139 (MQ=255) tcttcAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGT‑GGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAg > 1:886920/1‑139 (MQ=255) cagcagAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGT‑GGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCaaa < 2:62197/139‑1 (MQ=255) aaaaaGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGT‑GGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATgaa > 1:1043498/1‑118 (MQ=255) aaaaaGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGT‑GGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATgaa < 2:1043498/118‑1 (MQ=255) aaaaaGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGT‑GGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATgg < 1:1385912/136‑1 (MQ=255) aaaaaGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGT‑GGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATgg > 2:1385912/1‑136 (MQ=255) gCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGT‑GGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGATGAAATAACAAGCAAATGGCATCATTc < 1:867045/139‑1 (MQ=255) gCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGT‑GGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTc < 2:44148/139‑1 (MQ=255) ctcaataccaccaatcataaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCt > 1:1021390‑M2/96‑139 (MQ=255) aataccaccaatcataaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTAt > 1:804058‑M2/93‑99 (MQ=255) aataccaccaatcataaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTAt < 2:804058‑M2/7‑1 (MQ=255) tGCATTTCAGCCAGCCTGTTGGCGGAGT‑GGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCt > 1:480296/1‑134 (MQ=255) tGCATTTCAGCCAGCCTGTTGGCGGAGT‑GGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCt < 2:480296/134‑1 (MQ=255) tGCATTTCAGCCAGCCTGTTGGCGGAGT‑GGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTA‑c > 1:624768/1‑139 (MQ=255) ccaatcataaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTA‑CCa > 2:376953‑M2/86‑139 (MQ=255) tctCAGCCAGCCTGTTGGCGGAGT‑GGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCCTCATTCCTGCTTTTA‑CCAgg < 2:886920/137‑1 (MQ=255) cagccagcCTGTTGGCGGAGT‑GGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTA‑CCAggggg > 2:1212790/1‑139 (MQ=255) cagccagcCTGTTGGCGGAGT‑GGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTA‑CCAggggg > 2:399098/1‑139 (MQ=255) cataaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTA‑CCa > 2:105454‑M2/81‑134 (MQ=255) cataaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTA‑CCa < 1:105454‑M2/54‑1 (MQ=255) gccTGTTGGCGGAGT‑GGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTA‑CCAGGGGGATTTaa < 1:399098/139‑1 (MQ=255) ccTGTTGGCGGAGT‑GGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTA‑CCAGGGGGATTTAAc > 2:1204426/1‑139 (MQ=255) cTGTTGGCGGAGT‑GGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTA‑CCAGGGGGATTTAACa < 2:624768/139‑1 (MQ=255) tGTTGGCGGAGTGGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTA‑CCAGGGGGATTTAACa < 2:1191240/139‑1 (MQ=255) gTTGGCGGAGT‑GGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATgaaga < 1:268326/88‑1 (MQ=255) gTTGGCGGAGT‑GGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATgaaga > 2:268326/1‑88 (MQ=255) ttGGCGGAGT‑GGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATTGCATCATTCCTGCTTTTA‑CCAGGGGGATTTAACATg > 1:67591/1‑138 (MQ=255) ttGGCGGAGT‑GGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTA‑CCAGGGGGATTTAACATg < 2:67591/138‑1 (MQ=255) gCGGAGT‑GGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAAt < 2:921166/79‑1 (MQ=255) gCGGAGT‑GGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTA‑CCAGGGGGATTTAACATGCTTa < 1:670647/139‑1 (MQ=255) gCGGAGT‑GGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTA‑CCAGGGGGATTTAACATGCTTa < 1:1204426/139‑1 (MQ=255) gCGGAGT‑CGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAAt > 1:921166/1‑79 (MQ=255) t‑GGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTA‑CCAGGGGGATTTAACATGCTTATTGGCt < 1:782254/139‑1 (MQ=255) ggCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTA‑CCAGGGGGATTTAACATGCTTATTgg > 2:832846/1‑136 (MQ=255) ggCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTA‑CCAGGGGGATTTAACATGCTTATTgg < 1:832846/136‑1 (MQ=255) ggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGaa < 2:797603‑M2/10‑1 (MQ=255) ggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGaa > 1:797603‑M2/57‑66 (MQ=255) ggCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATg < 2:1417/66‑1 (MQ=255) ggCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATg > 1:1417/1‑66 (MQ=255) ggCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTA‑CCAGGGGGATTTAACATGCTTATTGGCTATGTAcgc < 2:1510485/139‑1 (MQ=255) aCGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGaaaa > 1:419297/1‑60 (MQ=255) aCGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGaaaa < 2:419297/60‑1 (MQ=255) ggACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGcat > 1:791520/1‑76 (MQ=255) ggACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGcat < 2:791520/76‑1 (MQ=255) gctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTA‑CCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAg > 2:683875‑M2/35‑139 (MQ=255) ccAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTA‑CCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAg < 1:249733/139‑1 (MQ=255) aCAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTA‑CCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGAc < 2:745824/133‑1 (MQ=255) aCAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTA‑CCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGAc > 1:745824/1‑133 (MQ=255) agttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTA‑CCAg < 1:469022‑M2/55‑1 (MQ=255) agttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTA‑CCAg > 2:469022‑M2/26‑80 (MQ=255) aaTGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTA‑CCAgg < 2:41332/81‑1 (MQ=255) aaTGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTA‑CCAgg > 1:41332/1‑81 (MQ=255) tGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTA‑CCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCt > 2:253893/1‑139 (MQ=255) cAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTA‑CCAGGGGGATTTAACATGCTTATTGGCt < 1:751975/100‑1 (MQ=255) cAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTA‑CCAGGGGGATTTAACATGCTTATTGGCt > 2:751975/1‑100 (MQ=255) tgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTc < 2:971852‑M2/42‑1 (MQ=255) tgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTc > 1:971852‑M2/21‑62 (MQ=255) gCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTc > 1:71109/1‑59 (MQ=255) gCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTc < 2:71109/59‑1 (MQ=255) ctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTA‑CCAggggg < 2:610825‑M2/59‑1 (MQ=255) ctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTA‑CCAggggg > 1:610825‑M2/13‑71 (MQ=255) accaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAAt > 1:518312‑M2/6‑105 (MQ=255) accaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAAt < 2:518312‑M2/100‑1 (MQ=255) aCGTTTATGAAAATGAAGAAATAACAAGCAAATGGca > 2:1159611‑M2/2‑37 (MQ=255) aCGTTTATGAAAATGAAGAAATAACAAGCAAATGGca < 1:1159611‑M2/36‑1 (MQ=255) aCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTA‑CCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGAc < 1:567866‑M2/102‑1 (MQ=255) aCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTA‑CCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGAc > 2:567866‑M2/2‑103 (MQ=255) aCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTA‑CCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAATGCGCTGAACtgt > 2:907031‑M2/2‑139 (MQ=255) cGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTA‑CCAgg > 2:279647/1‑56 (MQ=255) cGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTA‑CCAgg < 1:279647/56‑1 (MQ=255) cGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTA‑CCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAATGCGCTGAACtgtg < 1:683875/139‑1 (MQ=255) | ATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGT‑GGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTA‑CCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAATGCGCTGAACTGTG > NC_000913/1209482‑1209757 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |