Predicted mutation
evidence seq id position mutation annotation gene description
MC JC NC_000913 4,490,116 Δ11 bp intergenic (‑53/+15) yjgR ← / ← idnR DUF853 family protein with NTPase fold/transcriptional repressor, 5‑gluconate‑binding

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ NC_000913 4490116 4490126 11 65 [0] [0] 67 yjgR/idnR DUF853 family protein with NTPase fold/transcriptional repressor, 5‑gluconate‑binding

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 44901150 (0.000)65 (1.130) 47/202 0.1 100% intergenic (‑52/+26) yjgR/idnR DUF853 family protein with NTPase fold/transcriptional repressor, 5‑gluconate‑binding
?NC_000913 4490127 = 0 (0.000)intergenic (‑64/+14) yjgR/idnR DUF853 family protein with NTPase fold/transcriptional repressor, 5‑gluconate‑binding

TAATCAGCCCATGACGGTTAGCCATTCCCGGCAGTAAAAACAGTTCTGTGTCCGGCGTGCGGGCAATTAACAGGGGTTCACTCATGAGATATCCTCCAGTTTCCTGCCTGGAGTATAGGCAACGTCCGGCAAAGAGAATACGTGTAATGAAGAGAAAATAACCTAAAGCGTGTTGCCGTGATAAATCTGATACCCGAGGTCAACAGTGTTGTGGTTGTGATCGTTATTTTTAATTTTGCTCAGCAACATTTGGGCGGCCATCCGACCAATATC  >  NC_000913/4489979‑4490251
                                                                                                                                        |                                                                                                                                        
tAATCAGCCCATGACGGTTAGCCATTCCCGGCAGTAAAAACAGTTCTGTGTCCGGCGTGCGGGCAATTAACAGGGGTTCACTCATGAGATATCCTCCAGTTTCCTGCCTGGAGTATAGGCAACGTCCGGCAAAGAGAga                                                                                                                                        <  1:344686‑M1/139‑3 (MQ=255)
     aGCCCATGACGGTTAGCCATTCCCGGCAGTAAAAACAGTTCTGTGTCCGGCGTGCGGGCAATTAACAGGGGTTCACTCATGAGAGATCCTCCAGTTTCCTGCCTGGAGTATAGGCAACGTCCGGCAAAGAGAgaagaga                                                                                                                                   <  2:992832‑M1/139‑8 (MQ=255)
       cccATGACGGTTAGCCATTCCCGGCAGTAAAAACAGTTCTGTGTCCGGCGTGCGGGCAATTAACAGGGGTTCACTCATGAGATATCCTCCAGTTTCCTGCCTGGAGTATAGGCAACGTCCGGCAAAGAGAgaagagaaa                                                                                                                                 <  2:434124‑M1/139‑10 (MQ=255)
          aTGACGGTTAGCCATTCCCGGCAGTAAAAACAGTTCTGTGTCCGGCGTGCGGGCAATTAACAGGGGTTCACTCATGAGATATCCTCCAGTTTCCTGCCTGGAGTATAGGCAACGTCCGGCAAAGAGAgaagagaaaata                                                                                                                              >  1:1381188‑M1/1‑127 (MQ=255)
                       aTTCCCGGCAGTAAAAACAGTTCTGTGTCCGGCGTGCGGGCAATTAACAGGGGTTCACTCATGAGATATCCTCCAGTTTCCTGCCTGGAGTATAGGCAACGTCCGGCAAAGAGAgaagagaaaataacttaaagcgtgt                                                                                                                 >  2:254573‑M1/1‑114 (MQ=255)
                         tCCCGGCAGTAAAAACAGTTCTGTGTCCGGCGTGCGGGCAATTAACAGGGGTTCACTCATGAGATATCCTCCAGTTTCCTGCCTGGAGTATAGGCAACGTCCGGCAAAGAGAgaagagaaaataacttaaagcgtgttg                                                                                                               >  2:634477‑M1/1‑112 (MQ=255)
                          cccGGCAGTAAAAACAGTTCTGTGTCCGGCGTGCGGGCAATTAACAGGGGTTCACTCATGAGATATCCTCCAGTTTCCTGCCTGGAGTATAGGCAACGTCCGGCAAAGAGAgaagagaaaataacttaaagcgtgttgc                                                                                                              <  1:254573‑M1/139‑29 (MQ=255)
                          cccGGCAGTAAAAACAGTTCTGTGTCCGGCGTGCGGGCAATTAACAGGGGTTCACTCATGAGATATCCTCCAGTTTCCTGCCTGGAGTATAGGCAACGTCCGGCAAAGAGAgaagagaaaataacttaaagcgtgttgc                                                                                                              <  1:1394519‑M1/139‑29 (MQ=255)
                                            tCTGTGTCCGGCGTGCGGGCAATTAACAGGGGTTCACTCATGAGATATCCTCCAGTTTCCTGCCTGGAGTATAGGCAACGTCCGGCAAAGAGAgaagagaaaataacttaaagcgtgttgccgtgataaatctgatacc                                                                                            >  1:555411‑M1/1‑93 (MQ=255)
                                              tgtgTCCGGCGTGCGGGCAATTAACAGGGGTTCACTCATGAGATATCCTCCAGTTTCCTGCCTGGAGTATAGGCAACGTCCGGCAAAGAGAgaagagaaaataacttaaagcgtgttgccgtgataaatctga                                                                                                <  2:1510232‑M1/133‑43 (MQ=255)
                                              tgtgTCCGGCGTGCGGGCAATTAACAGGGGTTCACTCATGAGATATCCTCCAGTTTCCTGCCTGGAGTATAGGCAACGTCCGGCAAAGAGAgaagagaaaataacttaaagcgtgttgccgtgataaatctga                                                                                                >  1:1510232‑M1/1‑91 (MQ=255)
                                                tgtCCGGCGTGCGGGCAATTAACAGGGGTTCACTCATGAGGTATCCTCCAGTTTCCTGCCTGGAGTATAGGCAACGTCCGGCAAAGAGAgaagagaaaataacttaaagcgtgttgccgtgataaatctgatacccgag                                                                                        >  1:267521‑M1/1‑89 (MQ=255)
                                                tgtCCGGCGTGCGGGCAATTAACAGGGGTTCACTCATGAGATATCCTCCAGTTTCCTGCCTGGAGTATAGGCAACGTCCGGCAAAGAGAgaagagaaaataacttaaagcgtgttgccgtgataaatctgatacccgag                                                                                        <  2:555411‑M1/139‑51 (MQ=255)
                                                tgtCCGGCGTGCGGGCAATTAACAGGGGTTCACTCATGAGATATCCTCCAGTTTCCTGCCTGGAGTATAGGCAACGTCCGGCAAAGAGAgaagagaaaataacttaaagcgtgttgccgtgataaatctgatacccgag                                                                                        <  2:598231‑M1/139‑51 (MQ=255)
                                                       cGTGCGGGCAATTAACAGGGGTTCACTCATGAGATATCCTCCAGTTTCCTGCCTGGAGTATAGGCAACGTCCGGCAAAGAGAgaagagaaaataacttaaagcgtgttgccgtgataaatctgatac                                                                                             >  2:1489363‑M1/1‑82 (MQ=255)
                                                       cGTGCGGGCAATTAACAGGGGTTCACTCATGAGATATCCTCCAGTTTCCTGCCTGGAGTATAGGCAACGTCCGGCAAAGAGAgaagagaaaataacttaaagcgtgttgccgtgataaatctgatac                                                                                             <  1:1489363‑M1/127‑46 (MQ=255)
                                                                        ggggTTCACTCATGAGATATCCTCCAGTTTCCTGCCTGGAGTATAGGCAACGTCCGGCAAAGAGAgaagagaaaataacttaaagcgtgttgccgtgataaatctgatacccgaggtcaacagtgttgtggttgtgatc                                                                >  1:1336673‑M1/1‑65 (MQ=255)
                                                                        ggggTTCACTCATGAGATATCCTCCAGTTTCCTGCCTGGAGTATAGGCAACGTCCGGCAAAGAGAgaagagaaaataacttaaagcgtgttgccgtgataaa                                                                                                     >  2:223191‑M1/1‑65 (MQ=255)
                                                                        ggggTTCACTCATGAGATATCCTCCAGTTTCCTGCCTGGAGTATAGGCAACGTCCGGCAAAGAGAgaagagaaaataacttaaagcgtgttgccgtgataaa                                                                                                     <  1:223191‑M1/102‑38 (MQ=255)
                                                                          ggTTCACTCATGAGATATCCTCCAGTTTCCTGCCTGGAGTATAGGCAACGTCCGGCAAAGAGAgaagagaaaataacttaaagcgtgttgccgtgataaatctgatacccgaggtcaacagtgttgtggttgtgatcgt                                                              >  2:1243485‑M1/1‑63 (MQ=255)
                                                                            ttCACTCATGAGATATCCTCCAGTTTCCTGCCTGGAGTATAGGCAACGTCCGGCAAAGAGAgaagagaaaataacttaaagcgtgttgccgtgataaatctgatacccgaggtcaacagtgttgtggttgtgatcgtta                                                            >  1:812489‑M1/1‑61 (MQ=255)
                                                                            ttCACTCATGAGATATCCTCCAGTTTCCTGCCTGGAGTATAGGCAACGTCCGGCAAAGAGAgaagagaaaataacttaaagcgtgttgccgtgat                                                                                                        <  2:561378‑M1/95‑35 (MQ=255)
                                                                            ttCACTCATGAGATATCCTCCAGTTTCCTGCCTGGAGTATAGGCAACGTCCGGCAAAGAGAgaagagaaaataacttaaagcgtgttgccgtgat                                                                                                        >  1:561378‑M1/1‑61 (MQ=255)
                                                                              cACTCATGAGATATCCTCCAGTTTCCTGCCTGGAGTATAGGCAACGTCCGGCAAAGAGAgaagagaaaataacttaaagcgtgttgc                                                                                                              <  2:1288016‑M1/87‑29 (MQ=255)
                                                                              cACTCATGAGATATCCTCCAGTTTCCTGCCTGGAGTATAGGCAACGTCCGGCAAAGAGAgaagagaaaataacttaaagcgtgttgc                                                                                                              >  1:1288016‑M1/1‑59 (MQ=255)
                                                                              cACTCATGAGATATCCTCCAGTTTCCTGCCTGGAGTATAGGCAACGTCCGGCAAAGAGAgaagagaaaataacttaaagcgtg                                                                                                                  <  2:118814‑M1/83‑25 (MQ=255)
                                                                              cACTCATGAGATATCCTCCAGTTTCCTGCCTGGAGTATAGGCAACGTCCGGCAAAGAGAgaagagaaaataacttaaagcgtg                                                                                                                  >  1:118814‑M1/1‑59 (MQ=255)
                                                                                   aTGAGATATCCTCCAGTTTCCTGCCTGGAGTATAGGCAACGTCCGGCAAAGAGAgaagagaaaataacttaaagcgtgttgccgtgataaatctgatacccgaggtcaacagtgttgtggttgtgatcgttatttttaa                                                     >  2:847946‑M1/1‑54 (MQ=255)
                                                                                           tcctccAGTTTCCTGCCTGGAGTATAGGCAACGTCCGGCAAAGAGAgaagagaaaataacttaaagcgtgttgccgtgataaatctgatacccgaggtcaacagtgttgtggttgtgatcgttatttttaattttgctc                                             >  1:811999‑M1/1‑46 (MQ=255)
                                                                                           tcctccAGTTTCCTGCCTGGAGTATAGGCAACGTCCGGCAAAGAGAgaagagaaaataacttaaagcgtgttgccgtgataaatctgatacccgaggtcaa                                                                                   >  2:1305536‑M1/1‑46 (MQ=255)
                                                                                           tcctccAGTTTCCTGCCTGGAGTATAGGCAACGTCCGGCAAAGAGAgaagagaaaataacttaaagcgtgttgccgtgataaatctgatacccgaggtcaa                                                                                   <  1:1305536‑M1/101‑56 (MQ=255)
                                                                                           tcctccAGTTTCCTGCCTGGAGTATAGGCAACGTCCGGCAAAGAGAgaagagaaaataacttaaagcgtgttgccgtgat                                                                                                        >  1:1084577‑M1/1‑46 (MQ=255)
                                                                                           tcctccAGTTTCCTGCCTGGAGTATAGGCAACGTCCGGCAAAGAGAgaagagaaaataacttaaagcgtgttgccgtgat                                                                                                        <  2:1084577‑M1/80‑35 (MQ=255)
                                                                                             ctccAGTTTCCTGCCTGGAGTATAGGCAACGTCCGGCAAAGAGAgaagagaaaataacttaaagcgtgttgccgtgataaatctgatacccgaggtcaa                                                                                   >  1:394301‑M1/1‑44 (MQ=255)
                                                                                             ctccAGTTTCCTGCCTGGAGTATAGGCAACGTCCGGCAAAGAGAgaagagaaaataacttaaagcgtgttgccgtgataaatctgatacccgaggtcaa                                                                                   <  2:394301‑M1/99‑56 (MQ=255)
                                                                                                 aGTTTCCTGCCTGGAGTATAGGCAACGTCCGGCAAAGAGAgaagagaaaataacttaaagcgtgttgccgtgataaatctgatacccgaggtcaacagtgttgtggttgtgatcgttatttttaattttgctcagcaac                                       <  2:1336673‑M1/139‑100 (MQ=255)
                                                                                                   tttCCTGCCTGGAGTATAGGCAACGTCCGGCAAAGAGAgaagagaaaataacttaaagcgtgttgccgtgataaatctgatacccgaggtcaacagtgttgtggttgtgatcgttatttttaattttgctcagcaacat                                     >  1:1389303‑M1/1‑38 (MQ=255)
                                                                                                        tgcctgGAGTATAGGCAACGTCCGGCAAAGAGAgaagagaaaataacttaaagcgtgttgc                                                                                                              >  2:1235578‑M1/1‑33 (MQ=255)
                                                                                                        tgcctgGAGTATAGGCAACGTCCGGCAAAGAGAgaagagaaaataacttaaagcgtgttgc                                                                                                              <  1:1235578‑M1/61‑29 (MQ=255)
                                                                                                         gcctgGAGTATAGGCAACGTCCGGCAAAGAGAgaagagaaaat                                                                                                                               >  2:1060640‑M1/1‑32 (MQ=255)
                                                                                                         gcctgGAGTATAGGCAACGTCCGGCAAAGAGAgaagagaaaat                                                                                                                               <  1:1060640‑M1/43‑12 (MQ=255)
                                                                                                          cctgGAGTATAGGCAACGTCCGGCAAAGAGAgaagagaaaataacttaaagcgtgttgccgtgataaatctgatacccgaggtcaacagtgttgtggttgtgatcgttatttttaattttgctcagcaacatttgggcg                              <  2:1381188‑M1/139‑109 (MQ=255)
                                                                                                                   taGGCAACGTCCGGCAAAGAGAgaagagaaaataacttaaagcgtgttgccgtgataaatctgatacccgaggtcaacagtgttgtggttgtgatcgttatttttaattttgctcagcaacatttgggcggccatccga                     >  1:432848‑M1/1‑22 (MQ=255)
                                                                                                                    aGGCAACGTCCGGCAAAGAGAgaagagaaaataacttaaagcgtgttgccgtgataaatctgatacccgaggtcaacagtgttgtggttgtgatcgttatttttaattttgctcagcaacatttgggcggccatccgac                    <  2:267521‑M1/139‑119 (MQ=255)
                                                                                                                    aGGCAACGTCCGGCAAAGAGAgaagagaaaataacttaaagcgtgttgccgtgataaatctgatacccgaggtcaacagtgttgtggttgtgatcgttatttttaattttgctcagcaacatttgggcggccatc                        <  2:374518‑M1/135‑115 (MQ=255)
                                                                                                                    aGGCAACGTCCGGCAAAGAGAgaagagaaaataacttaaagcgtgttgccgtgataaatctgatacccgaggtcaacagtgttgtggttgtgatcgttatttttaattttgctcagcaacatttgggcggccatc                        >  1:374518‑M1/1‑21 (MQ=255)
                                                                                                                    aGGCAACGTCCGGCAAAGAGAgaagagaaaataacttaaagcgtgttgccgtgataaatctgatacccgaggtcaacagtgttgtggttgtgatcgttatttttaattttgctcagcaacatttgggcg                              <  1:1055419‑M1/129‑109 (MQ=255)
                                                                                                                    aGGCAACGTCCGGCAAAGAGAgaagagaaaataacttaaagcgtgttgccgtgataaatctgatacccgaggtcaacagtgttgtggttgtgatcgttatttttaattttgctcagcaacatttgggcg                              >  2:1055419‑M1/1‑21 (MQ=255)
                                                                                                                         aCGTCCGGCAAAGAGAgaagagaaaataacttaaagcgtgttgccgtgataaatctgatacccgaggtcaacagtgttgtggttgtgatcgttatttttaattttgctcagcaacatttgggcggccatccgaccaata               >  1:280092‑M1/1‑16 (MQ=255)
                                                                                                                         aCGTCCGGCAAAGAGAgaagagaaaataacttaaagcgtgttgccgtgataaatctgatacccgaggtcaacagtgttgtggttgtgatcgttatttttaattttgctcagcaacatttgggcggccatccgaccaata               >  2:615838‑M1/1‑16 (MQ=255)
                                                                                                                          cGTCCGGCAAAGAGAgaagagaaaataacttaaagcgtgttgccgtgataaatctgatacccgaggtcaacagtgttgtggttgtgatcgttatttttaattttgctcagcaacatttgggcggccatccgaccaatat              >  2:1019338‑M1/1‑15 (MQ=255)
                                                                                                                          cGTCCGGCAAAGAGAgaagagaaaataacttaaagcgtgttgccgtgataaatctgatacccgaggtcaacag                                                                                >  2:1232258‑M1/1‑15 (MQ=255)
                                                                                                                          cGTCCGGCAAAGAGAgaagagaaaataacttaaagcgtgttgccgtgataaatctgatacccgaggtcaacag                                                                                <  1:1232258‑M1/73‑59 (MQ=255)
                                                                                                                          cGTCCGGCAAAGAGAgaagagaaaataacttaaagcgtgttgccgtgataaatctgatacccgaggtcaacag                                                                                >  2:27794‑M1/1‑15 (MQ=255)
                                                                                                                          cGTCCGGCAAAGAGAgaagagaaaataacttaaagcgtgttgccgtgataaatctgatacccgaggtcaacag                                                                                <  1:27794‑M1/73‑59 (MQ=255)
                                                                                                                           gTCCGGCAAAGAGAgaagagaaaataacttaaagcgtgttgccgtgataaatctgatacccgaggtcaa                                                                                   <  2:337074‑M1/69‑56 (MQ=255)
                                                                                                                           gTCCGGCAAAGAGAgaagagaaaataacttaaagcgtgttgccgtgataaatctgatacccgaggtcaa                                                                                   >  1:337074‑M1/1‑14 (MQ=255)
                                                                                                                              cGGCAAAGAGAgaagagaaaataacttaaagcgtgttg                                                                                                               <  2:1486385‑M1/38‑28 (MQ=255)
                                                                                                                              cGGCAAAGAGAgaagagaaaataacttaaagcgtgttg                                                                                                               >  1:1486385‑M1/1‑11 (MQ=255)
                                                                                                                               ggCAAAGAGAgaagagaaaataacttaaagcgtgttgccgtgataaatctgatacccgaggtcaacagtgttgtggttgtgatcgttatttttaattttgctcagcaacatttgggcggccatccgaccaatatcaaaa         <  2:1389303‑M1/139‑130 (MQ=255)
                                                                                                                                gCAAAGAGAgaagagaaaataacttaaagcgtgttgccgtgataaatctgatacccgaggtcaacagtgttgtggttgtgatcgttatttttaattttgctcagcaacatttgggcggccatccgaccaatatcaaaac        >  1:353942‑M1/1‑9 (MQ=255)
                                                                                                                                 cAAAGAGAgaagagaaaataacttaaagcgtgttgccgtgataaatctgatacccgaggtcaacagtgttgtggttgtgatcgttatttttaattttgctcagcaacatttgggcggccatccgaccaatatcaaaacg       <  1:1019338‑M1/139‑132 (MQ=255)
                                                                                                                                      agagaagagaaaataacttaaagcgtgttgccgtgataaatctgatacccgaggtcaacagtgttgtggttgtgatcgttatttttaattttgctcagcaacatttgggcggccatccgaccaatatcaaaacggggag  >  2:1105209‑M1/1‑3 (MQ=255)
                                                                                                                                        agaagagaaaataacttaaagcgtgttgccgtgataaatctgatacccgaggtcaacagtgttgtggttgtgatcgtt                                                             >  1:1413251‑M1/1‑1 (MQ=255)
                                                                                                                                        agaagagaaaataacttaaagcgtgttgccgtgataaatctgatacccgaggtcaacagtgttgtggttgtgatcgtt                                                             <  2:1413251‑M1/78‑78 (MQ=255)
                                                                                                                                        |                                                                                                                                        
TAATCAGCCCATGACGGTTAGCCATTCCCGGCAGTAAAAACAGTTCTGTGTCCGGCGTGCGGGCAATTAACAGGGGTTCACTCATGAGATATCCTCCAGTTTCCTGCCTGGAGTATAGGCAACGTCCGGCAAAGAGAATACGTGTAATGAAGAGAAAATAACCTAAAGCGTGTTGCCGTGATAAATCTGATACCCGAGGTCAACAGTGTTGTGGTTGTGATCGTTATTTTTAATTTTGCTCAGCAACATTTGGGCGGCCATCCGACCAATATC  >  NC_000913/4489979‑4490251

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: