| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 3,081,877 | T→C | intergenic (‑242/‑36) | tktA ← / → loiP | transketolase 1, thiamine triphosphate‑binding/Phe‑Phe periplasmic metalloprotease, OM lipoprotein, low salt‑inducible, Era‑binding heat shock protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,081,877 | 0 | T | C | 100.0% | 304.3 / NA | 82 | intergenic (‑242/‑36) | tktA/loiP | transketolase 1, thiamine triphosphate‑binding/Phe‑Phe periplasmic metalloprotease, OM lipoprotein, low salt‑inducible, Era‑binding heat shock protein |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (42/40); total (42/40) | |||||||||||
TGGAACATCCTTTTGCCGCTTCAGAAATCTCTGGATCATGCTCGCATGTTGCGCAATCTACTCGCCCGTCCGCTGCGCTTTTCCTTATACTGAGACTGAGCGTCGATTCACCTGCAAACGGCGCATTTTTAGAATAATCCTGACCTTGTGCGGAAGAGAAAACATGAAAATTCGCGCCTTATTGGTAGCAATGAGCGTGGCAACGGTACTGACTGGTTGCCAGAATATGGACTCCAACGGACTGCTCTCATCAGGAGCGGAA > NC_000913/3081750‑3082011 | tGGAACATCCTTTTGCCGCTTCAGAAATCTCTGGATCATGCTCGCATGTTGCGCAATCTACTCGCCCGTCCGCTGCGCTTTTCCTTATACTGAGACTGAGCGTCGATTCACCTGCAAACGGCGCATTCTTAGAATAATc > 1:354019/1‑139 (MQ=255) ggAACATCCTTTTGCCGCTTCAGAAATCTCTGGATCATGCTCGCATGTTGCGCAATCTACTCGCCCGTCCGCTGCGCTTTTCCTTATACTGATACTGAGCGTCGATTCACCTGCAAACGGCGCATTCTTAGAATAATcc > 2:1489953/1‑139 (MQ=255) gAACATCCTTTTGCCGCTTCAGAAATCTCTGGATCATGCTCGCATGTTGCGCAATCTACTCGCCCGTCCGCTGCGCTTTTCCTTATACTGAGACTGAGCGTCGATTCACCTGCAAACGGCGCATTCTTAGAATAATCCt > 2:335828/1‑139 (MQ=255) aTCCTTTTGCCGCTTCAGAAATCTCTGGATCATGCTCGCATGTTGCGCAATCTACTCGCCCGTCCGCTGCGCTTTTCCTTATACTGAGACTGAGCGTCGATTCACCTGCAAACGGCGCATTCTTAGAATAATCCTGAcc > 1:644995/1‑139 (MQ=255) tttGCCGCTTCAGAAATCTCTGGATCATGCTCGCATGTTGCGCAATCTACTCGCCCGTCCGCTGCGCTTTTCCTTATACTGAGACTGAGCGTCGATTCACCTGCAAACGGCGCATTCTTAGAATAATCCTGACCTtgtg > 2:1332110/1‑139 (MQ=255) ttGCCGCTTCAGAAATCTCTGGATCATGCTCGCATGTTGCGCAATCTACTCGCCCGTCCGCTGCGCTTTTCCTTATACTGAGACTGAGCGTCGATTCACCTGCAAACGGCGCATTCTTAGAATAATCCTGACCtt < 2:1044357/135‑1 (MQ=255) ttGCCGCTTCAGAAATCCCTGGATCATGCTCGCATGTTGCGCAATCTACTCGCCCGTCCGCTGCGCTTTTCCTTATACTGAGACTGAGCGTCGATTCACCTGCAAACGGCGCATTCTTAGAATAATCCTGACCtt > 1:1044357/1‑135 (MQ=255) tGCCGCTTCAGAAATCTCTGGATCATGCTCGCATGTTGCGCAATCTACTCGCCCGTCCGCTGCGCTTTTCCTTATACTGAGACTGAGCGTCGATTCACCTGCAAACGGCGCATTCTTAGAATAATCCTGACCTTGTGCg > 2:1246229/1‑139 (MQ=255) cTTCAGAAATCTCTGGATCATGCTCGCATGTTGCGCAATCTACTCGCCCGTCCGCTGCGCTTTTCCTTATACTGAGACTGAGCGTCGATTCACCTGCAAACGGCGCATTCTTAGaat < 1:685963/117‑1 (MQ=255) cTTCAGAAATCTCTGGATCATGCTCGCATGTTGCGCAATCTACTCGCCCGTCCGCTGCGCTTTTCCTTATACTGAGACTGAGCGTCGATTCACCTGCAAACGGCGCATTCTTAGaat > 2:685963/1‑117 (MQ=255) cTTCAGAAATCTCTGGATCATGCTCGCATGTTGCGCAATCTACTCGCCCGTCCGCTGCGCTTTTCCTTATACTGAGACTGAGCGTCGATTCACCTGCAAACGGCGCATTCTTAGAATAATCCTGACCTTGTGCGGAaga > 2:730861/1‑139 (MQ=255) tCAGAAATCTCTGGATCATGCTCGCATGTTGCGCAATCTACTCGCCCGTCCGCTGCGCTTTTCCTTATACTGAGACTGAGCGTCGATTCACCTGCAAACGGCGCATTCTTAGAATAATCCTGACCTTGTGCGGAAgaga > 2:496668/1‑139 (MQ=255) cAGAAATCTCTGGATCATGCTCGCATGTTGCGCAATCTACTCGCCCGTCCGCTGCGCTTTTCCTTATACTGAGACTGAGCGTCGATTCACCTGCAAACGGCGCATTCTTAGAATAATCCTGACCTTGTGCGGAAGAGaa < 2:644995/139‑1 (MQ=255) tGGATCATGCTCGCATGTTGCGCAATCTACTCGCCCGTCCGCTGCGCTTTTCCTTATACTGAGACTGAGCGTCGATTCACCTGCAAACGGCGCATTCTTAGAATAATCCTGACCTTGTGCGGAAGAGAAAACATGaaaa > 2:1247569/1‑139 (MQ=255) aTCATGCTCGCATGTTGCGCAATCTACTCGCCCGTCCGCTGCGCTTTTCCTTATACTGAGACTGAGCGTCGATTCACCTGCAAACGGCGCATTCTTAGAATAATCCTGACCTTGTGCGGAAGAGAAAACATGAAAATTc < 1:730861/139‑1 (MQ=255) aTCATGCTCGCATGTTGCGCAATCTACTCGCCCGTCCGCTGCGCTTTTCCTTATACTGAGACTGAGCGTCGATTCACCTGCAAACGGCGCATTCTTAGAATAATCCTGACCTTGTGCGGAAGAGAAAACATGAAAATTc < 1:269218/139‑1 (MQ=255) tGCTCGCATGTTGCGCAATCTACTCGCCCGTCCGCTGCGCTTTTCCTTATACTGAGACTGAGCGTCGATTCACCTGCAAACGGCGCATTCTTAGAATAATCCTGACCTTGTGCGGAaga < 2:585156/119‑1 (MQ=255) tGCTCGCATGTTGCGCAATCTACTCGCCCGTCCGCTGCGCTTTTCCTTATACTGAGACTGAGCGTCGATTCACCTGCAAACGGCGCATTCTTAGAATAATCCTGACCTTGTGCGGAaga > 1:585156/1‑119 (MQ=255) gCTCGCATGTTGCGCAATCTACTCGCCCGTCCGCTGCGCTTTTCCTTATACTGAGACTGAGCGTCGATTCACCTGCAAACGGCGCATTCTTAGAATAATCCTGACCTTGTGCGGAAGAGAAAACATGAAAATTCGCGcc < 1:84061/139‑1 (MQ=255) gCTCGCATGTTGCGCAATCTACTCGCCCGTCCGCTGCGCTTTTCCTTATACTGAGACTGAGCGTCGATTCACCTGCAAACGGCGCATTCTTAGAATAATCCTGACCTTGTGCGGAAGAGAAAACATGAAAATTCGCGcc < 1:335828/139‑1 (MQ=255) tCGCATGTTGCGCAATCTACTCGCCCGTCCGCTGCGCTTTTCCTTATACTGAGACTGAGCGTCGATTCACCTGCAAACGGCGCATTCTTAGAATAATCCTGACCTTGTGCGGAAGAGAAAACATGAAAATTCGCGCCtt < 1:1332110/139‑1 (MQ=255) cGCATGTTGCGCAATCTACTCGCCCGTCCGCTGCGCTTTTCCTTATACTGAGACTGAGCGTCGATTCACCTGCAAACGGCGCATTCTTAGAACAATCCTGACCTTGTGCGGAAGAGAAAACATGAAAATTCGCGCCTTa > 2:388666/1‑139 (MQ=255) gCATGTTGCGCAATCTACTCGCCCGTCCGCTGCGCTTTTCCTTATACTGAGACTGAGCGTCGATTCACCTGCAAACGGCGCATTCTTAGAATAATCCTGACCTTGTGCGGAAGAGAAAACATGAAAATTCGCGCCTTAt < 1:496668/139‑1 (MQ=255) gCATGTTGCGCAATCTACTCGCCCGTCCGCTGCGCTTTTCCTTATACTGAGACTGAGCGTCGATTAACCTGCAAACGGCGCATTCTTAGAATAATCCTGACCTTGTGCGGAAGAGAAAACATGAAAATTCGCGCCTTAt > 2:1028688/1‑139 (MQ=255) tGTTGCGCAATCTACTCGCCCGTCCGCTGCGCTTTTCCTTATACTGAGACTGAGCGTCGATTCACCTGCAAACGGCGCATTCTTAGAATAATCCTGACCTTGTGCGGAAGAGAAAACATGAAAATTCGCGCCTTATTgg < 1:847118/139‑1 (MQ=255) tGCGCAATCTACTCGCCCGTCCGCTGCGCTTTTCCTTATACTGAGACTGAGCGTCGATTCACCTGCAAACGGCGCATTCTTAGaa > 1:53359/1‑85 (MQ=255) tGCGCAATCTACTCGCCCGTCCGCTGCGCTTTTCCTTATACTGAGACTGAGCGTCGATTCACCTGCAAACGGCGCATTCTTAGaa < 2:53359/85‑1 (MQ=255) gcgcAATCTACTCGCCCGTCCGCTGCGCTTTTCCTTATACTGAGACTGAGCGTCGATTCACCTGCAAACGACGCATTCTTAGAATAATCCTGACCTtgtg < 1:1330416/100‑1 (MQ=255) gcgcAATCTACTCGCCCGTCCGCTGCGCTTTTCCTTATACTGAGACTGAGCGTCGATTCACCTGCAAACGACGCATTCTTAGAATAATCCTGACCTtgtg > 2:1330416/1‑100 (MQ=255) aCTCGCCCGTCCGCTGCGCTTTTCCTTATACTGAGACTGAGCGTCGATTCACCTGCAAACGGCGCATTCTTAGAATAATCCTGACCTTGTGCGGAAGAGAAAACATGAAAATTCGCGCCTTATTGGTAGCAATGAGCGt < 1:1247569/139‑1 (MQ=255) aCTCGCCCGTCCGCTGCGCTTTTCCTTATACTGAGACTGAGCGTCGATTCACCTGCAAACGGCGCATTCTTAGAATAATCCTGACCTTGTGCGGAAGAGAAAACATGAAAATTCGCGCCTTATTGGTAGCAATGAGCGt < 2:683261/139‑1 (MQ=255) aCTCGCCCGTCCGCTGCGCTTTTCCTTATACTGAGACTGAGCGTCGATTCACCTGCAAACGGCGCATTCTTAGAATAATCCTGACCTTGTGCGGAAGAGAAAACATGAAAATTCGCGCCTTATTGGTAGCAATGAGCGt < 2:354019/139‑1 (MQ=255) cGTCCGCTGCGCTTTTCCTTATACTGAGACTGAGCGTCGATTCACCTGCAAACGGCGCATTCTTAGAATAATCCTGACCtt < 1:1358613/81‑1 (MQ=255) cGTCCGCTGCGCTTTTCCTTATACTGAGACTGAGCGTCGATTCACCTGCAAACGGCGCATTCTTAGAATAATCCTGACCtt > 2:1358613/1‑81 (MQ=255) cGTCCGCTGCGCTTTTCCTTATACTGAGACTGAGCGTCGATTCACCTGCAAACGGCGCATTCTTAGAATAATCCTGACCTTGTGCg > 1:306016/1‑86 (MQ=255) cGTCCGCTGCGCTTTTCCTTATACTGAGACTGAGCGTCGATTCACCTGCAAACGGCGCATTCTTAGAATAATCCTGACCTTGTGCg < 2:306016/86‑1 (MQ=255) tGCGCTTTTCCTTATACTGAGACTGAGCGTCGATTCACCTGCAAACGGCGCATTCTTAGAATAATCCTGACCTTGTGCGGAAGAGAAAACATGAAAATTCGCGCCTTATTGGTAGCAATGAGCGTGGCAACGGTactga > 1:272921/1‑139 (MQ=255) cgcTTTTCCTTATACTGAGACTGAGCGTCGATTCACCTGCAAACGGCGCATTCTTAGAATAATCCTGACCTTGTGCGGAAGAGAAAACATGAAAATTCGCGCCTTATTGGTAGCAATGAGCGTGGCaa > 1:304978/1‑128 (MQ=255) cgcTTTTCCTTATACTGAGACTGAGCGTCGATTCACCTGCAAACGGCGCATTCTTAGAATAATCCTGACCTTGTGCGGAAGAGAAAACATGAAAATTCGCGCCTTATTGGTAGCAATGAGCGTGGCaa < 2:304978/128‑1 (MQ=255) tataCTGAGACTGAGCGTCGATTCACCTGCAAACGGCGCATTCTTAGAATAATCCTGACCTTGTGCGGAAGAGAAAACATGAAAATTCGCGCCTTATTGGTAGCAATGAGCGTGGCAACGGTACTGACTGGTTGCCAGa < 2:272921/139‑1 (MQ=255) actgagactgagCGTCGATTCACCTGCAAACGGCGCATTCTTAGAATAATCCTGACCTTGTGCGGAAGAGAAAACATGAAAATTcg > 1:35806/1‑86 (MQ=255) actgagactgagCGTCGATTCACCTGCAAACGGCGCATTCTTAGAATAATCCTGACCTTGTGCGGAAGAGAAAACATGAAAATTcg < 2:35806/86‑1 (MQ=255) tgagactgagCGTCGATTCACCTGCAAACGGCGCATTCTTAGaa > 1:1218001/1‑44 (MQ=255) tgagactgagCGTCGATTCACCTGCAAACGGCGCATTCTTAGaa < 2:1218001/44‑1 (MQ=255) tgagactgagCGTCGATTCACCTGCAAACGGCGCATTCTTAGAATAATcc > 1:648373/1‑50 (MQ=255) tgagactgagCGTCGATTCACCTGCAAACGGCGCATTCTTAGAATAATcc < 2:648373/50‑1 (MQ=255) agactgagCGTCGATTCACCTGCAAACGGCGCATTCTTAGaat < 2:920303/43‑1 (MQ=255) agactgagCGTCGATTCACCTGCAAACGGCGCATTCTTAGaat > 1:920303/1‑43 (MQ=255) agactgagCGTCGATTCACCTGCAAACGGCGCATTCTTAGaa > 1:737194/1‑42 (MQ=255) agactgagCGTCGATTCACCTGCAAACGGCGCATTCTTAGaa < 2:737194/42‑1 (MQ=255) agactgagCGTCGATTCACCTGCAAACGGCGCATTCTTAGaa < 1:293407/42‑1 (MQ=255) agactgagCGTCGATTCACCTGCAAACGGCGCATTCTTAGaa > 2:293407/1‑42 (MQ=255) agactgagCGTCGATTCACCTGCAAACGGCGCATTCTTAGAATAATc < 1:867928/47‑1 (MQ=255) agactgagCGTCGATTCACCTGCAAACGGCGCATTCTTAGAATAATc > 2:867928/1‑47 (MQ=255) agactgagCGTCGATTCACCTGCAAACGGCGCATTCTTAGAATAATCCTGACCTtgtg < 2:189356/58‑1 (MQ=255) agactgagCGTCGATTCACCTGCAAACGGCGCATTCTTAGAATAATCCTGACCTtgtg < 1:347400/58‑1 (MQ=255) agactgagCGTCGATTCACCTGCAAACGGCGCATTCTTAGAATAATCCTGACCTtgtg > 1:189356/1‑58 (MQ=255) agactgagCGTCGATTCACCTGCAAACGGCGCATTCTTAGAATAATCCTGACCTtgtg > 2:347400/1‑58 (MQ=255) agactgagCGTCGATTCACCTGCAAACGGCGCATTCTTAGAATAATCCTGACCTTGTGCg < 1:63/60‑1 (MQ=255) agactgagCGTCGATTCACCTGCAAACGGCGCATTCTTAGAATAATCCTGACCTTGTGCg > 2:63/1‑60 (MQ=255) agactgagCGTCGATTCACCTGCAAACGGCGCATTCTTAGAATAATCCTGACCTTGTGCGGAAGAGAAAACATGAAAATTCGCGCCTTAt > 2:1463733/1‑90 (MQ=255) agactgagCGTCGATTCACCTGCAAACGGCGCATTCTTAGAATAATCCTGACCTTGTGCGGAAGAGAAAACATGAAAATTCGCGCCTTAt < 1:1463733/90‑1 (MQ=255) agactgagCGTCGATTCACCTGCAAACGGCGCATTCTTAGAATAATCCTGACCTTGTGCGGAAGAGAAAACATGAAAATTCGCGCCTTATTGGTAGCAATGAGCGTGGCaa < 2:647194/111‑1 (MQ=255) agactgagCGTCGATTCACCTGCAAACGGCGCATTCTTAGAATAATCCTGACCTTGTGCGGAAGAGAAAACATGAAAATTCGCGCCTTATTGGTAGCAATGAGCGTGGCaa > 1:647194/1‑111 (MQ=255) agactgagCGTCGATTCACCTGCAAACGGCGCATTCTTAGAATAATCCTGACCTTGTGCGGAAGAGAAAACATGAAAATTCGCGCCTTATTGGTAGCAATGAGCGTGGCAACGGTACTGACTGGTTGCCAGAATATg < 2:1320907/137‑1 (MQ=255) agactgagCGTCGATTCACCTGCAAACGGCGCATTCTTAGAATAATCCTGACCTTGTGCGGAAGAGAAAACATGAAAATTCGCGCCTTATTGGTAGCAATGAGCGTGGCAACGGTACTGACTGGTTGCCAGAATATg > 1:1320907/1‑137 (MQ=255) agactgagCGTCGATTCACCTGCAAACGGCGCATTCTTAGAATAATCCTGACCTTGTGCGGAAGAGAAAACATGAAAATTCGCGCCTTATTGGTAGCAATGAGCGTGGCAACGGTACTGACTGGTTGCCAGAATATGGa > 1:104363/1‑139 (MQ=255) agactgagCGTCGATTCACCTGCAAACGGCGCATTCTTAGAATAATCCTGACCTTGTGCGGAAGAGAAAACATGAAAATTCGCGCCTTATTGGTAGCAATGAGCGTGGCAACGGTACTGACTGGTTGCCAGAATATGGa > 1:540265/1‑139 (MQ=255) gagCGTCGATTCACCTGCAAACGGCGCATTCTTAGAATAATCCTGACCTtgtg < 2:1423119/53‑1 (MQ=255) gagCGTCGATTCACCTGCAAACGGCGCATTCTTAGAATAATCCTGACCTtgtg > 1:1423119/1‑53 (MQ=255) gagCGTCGATTCACCTGCAAACGGCGCATTCTTAGAATAATCCTGACCTTGTGCGGAAGAGaa > 2:1433685/1‑63 (MQ=255) gagCGTCGATTCACCTGCAAACGGCGCATTCTTAGAATAATCCTGACCTTGTGCGGAAGAGaa < 1:1433685/63‑1 (MQ=255) gagCGTCGATTCACCTGCAAACGGCGCATTCTTAGAATAATCCTGACCTTGTGCGGAAGAGAAAACATGAAAATTCGCGCCTTATTGGTAGCAATGAGCGTGGCAACGGTACTGACTGGTTGCCAGAATATGGACTCCa > 2:621008/1‑139 (MQ=255) agCGTCGATTCACCTGCAAACGGCGCATTCTTAGAATAATCCTGAcc < 2:358577/47‑1 (MQ=255) agCGTCGATTCACCTGCAAACGGCGCATTCTTAGAATAATCCTGAcc > 1:358577/1‑47 (MQ=255) cAAACGGCGCATTCTTAGAATAATCCTGACCTTGTGCGGAAGAGAAAACATGAAAATTCGCGCCTTATTGGTAGCAATGAGCGTGGCAACGGTACCGACTGGTTGCCAGAATATGGa > 2:388605/1‑117 (MQ=255) cAAACGGCGCATTCTTAGAATAATCCTGACCTTGTGCGGAAGAGAAAACATGAAAATTCGCGCCTTATTGGTAGCAATGAGCGTGGCAACGGTACCGACTGGTTGCCAGAATATGGa < 1:388605/117‑1 (MQ=255) ggCGCATTCTTAGAATAATCCTGACCTTGTGCGGAAGAGAAAACATGAAAATTCGCGCCTTATTGGTAGCAATGAGCGTGGCAACGGTACTGACTGGTTGCCAGAATATGGACTCCAACGGACTGCTCTCATCAGGAGc > 2:82636/1‑139 (MQ=255) cgcATTCTTAGAATAGTCCTGACCTTGTGCGGAAGAGTAAACATGAAAATTCGCGCCTTATTGGTAGCAAt > 2:1009691/1‑71 (MQ=255) cgcATTCTTAGAATAATCCTGACCTTGTGCGGAAGAGAAAACATGAAAATTCGCGCCTTATTGGTAGCAAt < 1:1009691/71‑1 (MQ=255) gcATTCTTAGAACAATCCTGACCTTGTGCGGAAGAGAAAACATGAAAATTCGCGCCTTATTGGTAGCAATGAGCGTGGCAACGGTACTGACTGGTTGCCAGAATATGGACTCCAACGGACTGCTCTCATCAGGAGCGGa < 1:388666/139‑1 (MQ=255) cATTCTTAGAATAATCCTGACCTTGTGCGGAAGAGAAAACATGAAAATTCGCGCCTTATTGGTAGCAATGAGCGTGGCAACGGTACTGACTGGTTGCCAGAATATGGACTCCAACGGACTGCTCTCATCAGGAGCGGaa < 1:1489953/139‑1 (MQ=255) | TGGAACATCCTTTTGCCGCTTCAGAAATCTCTGGATCATGCTCGCATGTTGCGCAATCTACTCGCCCGTCCGCTGCGCTTTTCCTTATACTGAGACTGAGCGTCGATTCACCTGCAAACGGCGCATTTTTAGAATAATCCTGACCTTGTGCGGAAGAGAAAACATGAAAATTCGCGCCTTATTGGTAGCAATGAGCGTGGCAACGGTACTGACTGGTTGCCAGAATATGGACTCCAACGGACTGCTCTCATCAGGAGCGGAA > NC_000913/3081750‑3082011 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |