| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 1,594,132 | (C)8→10 | pseudogene (3856/3861 nt) | yneO ← | pseudogene, AidA homolog |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,594,124 | 1 | . | C | 97.3% | 120.2 / ‑3.8 | 37 | pseudogene (2/1461 nt) | yneO | pseudogene, AidA homolog |
| Reads supporting (aligned to +/- strand): ref base . (1/0); new base C (15/21); total (16/21) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.32e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.94e-01 | |||||||||||
| * | NC_000913 | 1,594,124 | 2 | . | C | 97.3% | 118.6 / ‑3.8 | 37 | pseudogene (2/1461 nt) | yneO | pseudogene, AidA homolog |
| Reads supporting (aligned to +/- strand): ref base . (1/0); new base C (15/21); total (16/21) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.32e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.94e-01 | |||||||||||
AACGTCATCAGGCCATTGTTTCCGGTATAGTTGCCGTTAACGGTCAGTACATTCCCCGGTTTCCCCCCTTCGCTATTCATTTGAACCGTGCCGCCATTCTCCAGGTTGCCGCCGATAGTGGTTTTAGCGACACGCAGT‑‑G‑‑CCCCCCC‑‑CAGGCATAACGTTCATATCACCTGCAGTGGTGACATTTCCCGACATCACACCGCTGTTATGGATATTAATGTGTTGACTTGCCATATTAATGGCAGAGTCGGAACC > NC_000913/1593986‑1594237 || aaCGTCATCAGGCCATTGTTTCCGGTATAGTTGCCGTTAACGGTCAGTACATTCCCCGGTTTCCCCCCTTCGCTATTCATTTGAACCGTGCCGCCATTCTCCAGGTTGCCGCCGATAGTGGTTTTAGCGACACGCAGT‑‑g > 2:1201688/1‑139 (MQ=255) gTCATCAGGCCATTGTTTCCGGTATAGTTGCCGTTAACGGTCAGTACATTCCCCGGTTTCCCCCCTTCGCTATTCATTTGAACCGTGCCGCCATTCTCCAGGTTGCCGCCGATAGTGGTTTTAGCGACACGCAGT‑‑G‑‑ccc < 1:1201688/139‑1 (MQ=255) tcatcaGGCCATTGTTTCCGGTATAGTTGCCGTTAACGGTCAGTACATTCCCCGGTTTCCCCCCTTCGCTATTCATTTGAACCGTGCCGCCATTCTCCAGGTTGCCGCCGATAGTGGTTTTAGCGACACGCAGT‑‑G‑‑cccc < 2:1189630/139‑1 (MQ=255) atcaGGCCATTGTTTCCGGTATAGTTGCCGTTAACGGTCAGTACATTCCCCGGTTTCCCCCCTTCGCTATTCATTTGAACCGTGCCGCCATTCTCCAGGTTGCCGCCGATAGTGGTTTTAGCGACACGCAGT‑‑G‑‑cccccc > 1:861739/1‑139 (MQ=255) ttGTTTCCGGTATAGTTGCCGTTAACGGTCAGTACATTCCCCGGTTTCCCCCCTTCGCTATTCATTTGAACCGTGCCGCCATTCTCCAGGTTGCCGCCGATAGTGGTTTTAGCGACACGCAGT‑‑G‑‑ccccccc‑‑cccaggca < 1:716639/139‑8 (MQ=255) tGTTTCCGGTATAGTTGCCGTTAACGGTCAGTACATTCCCCGGTTTCCCCCCTTCGCTATTCATTTGAACCGTGCCGCCATTCTCCAGGTTGCCGCCGATAGTGGTTTTAGCGACACGCAGT‑‑G‑‑ccccccc‑‑cccaggcat < 2:861739/139‑9 (MQ=255) gTTTCCGGTATAGTTGCCGTTAACGGTCAGTACATTCCCCGGTTTCCCCCCTTCGCTATTCATTTGAACCGTGCCGCCATTCTCCAGGTTGCCGCCGATAGTGGTTTTAGCGACACGCAGT‑‑G‑‑ccccccc‑‑cccccaggca < 1:892591/139‑10 (MQ=255) ataGTTGCCGTTAACGGTCAGTACATTCCCCGGTTTCCCCCCTTCGCTATTCATTTGAACCGTGCCGCCATTCTCCAGGTTGCCGCCGATAGTGGTTTTAGCGACACGCAGT‑‑GCCCCCCCCC‑‑CAGGCATAACGTTCata > 1:1113413/1‑139 (MQ=255) ttGCCGTTAACGGTCAGTACATTCCCCGGTTTCCCCCCTTCGCTATTCATTTGAACCGTGCCGCCATTCTCCAGGTTGCCGCCGATAGTGGTTTTAGCGACACGCAGT‑‑GCCCCCCCCC‑‑CAGGCCTACCGTCCATATccc > 1:361078/1‑137 (MQ=255) ttGCCGTTAACGGTCAGTACATTCCCCGGTTTCCCCCCTTCGCTATTCATTTGAACCGTGCCGCCATTCTCCAGGTTGCCGCCGATAGTGGTTTTAGCGACACGCAGT‑‑G‑‑ccccccc‑‑cc < 2:998575/118‑2 (MQ=255) ttGCCGTTAACGGTCAGTACATTCCCCGGTTTCCCCCCTTCGCTATTCATTTGAACCGTGCCGCCATTCTCCAGGTTGCCGCCGATAGTGGTTTTAGCGACACGCAGT‑‑G‑‑ccccccc‑‑cc > 1:998575/1‑117 (MQ=255) cGTTAACGGTCAGTACATTCCCCGGTTTCCCCCCTTCGCTATTCATTTGAACCGTGCCGCCATTCTCCAGGTTGCCGCCGATAGTGGTTTTAGCGACACGCAGT‑‑GCCCCCCCCC‑‑CAGGCATAACGTTCATATCACCTGc < 1:1273910/139‑1 (MQ=255) cGTTAACGGTCAGTACATTCCCCGGTTTCCCCCCTTCGCTATTCATTTGAACCGTGCCGCCATTCTCCAGGTTGCCGCCGATAGTGGTTTTAGCGACACGCAGT‑‑GCCCCCCCCC‑‑CAGGCATAACGTTCATATCACCTGc < 1:752162/139‑1 (MQ=255) aaCGGTCAGTACATTCCCCGGTTTCCCCCCTTCGCTATTCATTTGAACCGTGCCGCCATTCCCCAGGTTGCCGCCGATAGTGGTTTTAGCGACACGCAGT‑‑G‑‑CCCCCCCATCAGGCAGAACGTTCATATCACCTGccgcg > 2:1228321/1‑135 (MQ=255) aCGGTCAGTACATTCCCCGGTTTCCCCCCTTCGCTATTCATTTGAACCGTGCCGCCATTCTCCAGGTTGCCGCCGATAGTGGTTTTAGCGACACGCAGT‑‑GCCCCCCCCC‑‑CAGGCATAACGTTCATATCACCGGCActgc > 2:1077398/1‑138 (MQ=255) cGGTCAGTACATTCCCCGGTTTCCCCCCTTCGCTATTCATTCGAACCGTGCCGCCATTCTCCAGGTTGCCGCCGATAGTGGTTTTAGCGACACGCAGT‑‑GCCCCCCCCC‑‑CAGGCATAACGTTCATATCACCTGCAgtggt > 1:485257/1‑139 (MQ=255) ttCCCCGGTTTCCCCCCTTCGCTATTCATTTGAACCGTGCCTCCATTCTCCAGGTTGCCGCCGATAGTGGTTTTAGCGACACGCAGT‑‑G‑‑ccccccc‑‑cc < 1:106822/97‑2 (MQ=255) ttCCCCGGTTTCCCCCCTTCGCTATTCATTTGAACCGTGCCGCCATTCTCCCGGTTGCCGCCGATAGTGGTTTTAGCGACACGCAGT‑‑G‑‑ccccccc‑‑cc > 2:106822/1‑96 (MQ=255) tCCCCGGTTTCCCCCCTTCGCTATTCATTTGAACCGTGCCGCCATTCTCCAGGTTGCCGCCGATAGTGGTTTTAGCGACACGCAGT‑‑GCCCCCCCCC‑‑CAGGCATAACGTTCATATCACCTGCAGTGGTGACATTTCCCGa > 1:887189/1‑139 (MQ=255) tCCCCGGTTTCCCCCCTTCGCTATTCATTTGAACCGTGCCGCCATTCTCCAGGTTGCCGCCGATAGTGGTTTTAGCGACACGCAGT‑‑GCCCCCCCCC‑‑CAGGCATAACGTTCATATAACCTGCCGTGGTGAAATTTCCGGa > 1:961705/1‑139 (MQ=255) tCCCCGGTTTCCCCCCTTCGCTATTCATTTGAACCGTGCCGCCATTCTCCAGGTTGCCGCCGATAGTGGTTTTAGCGACACGCAGT‑‑GCCCCCCCCC‑‑CAGGCATAACATTCATATCACCTGCAGTGGTGACATTTCCCGa > 1:872556/1‑139 (MQ=255) ccGGTTTCCCCCCTTCGCTATTCATTCGAACCGTGCCGCCATTCTCCAGGTTGCCGCCGATAGTGGTTTTAGCGACACGCAGT‑‑GCCCCCCCCC‑‑CAGGCATAACGTTCATATCACCTGCAGTGGTGACATTTCCCGACAt < 2:485257/139‑1 (MQ=255) ggTTTCCCCCCTTCGCTATTCATTTGAACCGTGCCGCCATTCTCCAGGTTGCCGCCGATAGTGGTTTTAGCGACACGCAGT‑‑G‑‑ccccccc‑‑cccaggcata > 1:1090721/1‑90 (MQ=255) ggTTTCCCCCCTTCGCTATTCATTTGAACCGTGCCGCCATTCTCCAGGTTGCCGCCGATAGTGGTTTTAGCGACACGCAGT‑‑G‑‑ccccccc‑‑cccaggcata < 2:1090721/99‑10 (MQ=255) ggTTTCCCCCCTACGCTATTCATTTGAACCGTGCCGCCATTCTCCAGGTTGCCGCCGATAGTGGTTTTAGCGACACGCAGT‑‑GCCCCCCCCC‑‑CAGGCATAACGTTCAGATCATCTGCAGTGGTGACATTTCCCGACATca < 2:782281/139‑1 (MQ=255) ttCCCCCCTTTCCTTTTCATTTGAACCGTTCCGCCCTTCTCCAGGTTGCCGCCCATAATGGTTTTTGCGACACGCAGT‑‑GCCCCCCCCC‑‑CAGGCATAACGTTCATATCACCTGCAGTGGTGACATTTCCCGACATCacac < 2:961705/139‑1 (MQ=255) ttCCCCCCTTCGCTATTCATTTGAACCGTGCCGCCATTCTCCAGGTTGCCGCCGATAGTGGTTTTAGCGACACGCAGT‑‑GCCCCCCCCC‑‑CAGGCATAACGTTCATATCACCTGCAGTGGTGACATTTCCCGACATCacac < 2:974635/139‑1 (MQ=255) tCCCCCCTTCGCTATTCATTTGAACCGTGCCGCCATTCTCCAGGTTGCCGCCGATAGTGGTTTTAGCGACACGCAGT‑‑GCCCCCCCCC‑‑CAGGCATAACGTTCATATCACCTGCAGTGGTGACAt < 1:380493/123‑1 (MQ=255) tCCCCCCTTCGCTATTCATTTGAACCGTGCCGCCATTCTCCAGGTTGCCGCCGATAGTGGTTTTAGCGACACGCAGT‑‑GCCCCCCCCC‑‑CAGGCATAACGTTCATATCACCTGCAGTGGTGACAt > 2:380493/1‑123 (MQ=255) tcccccTTCGCTATTCATTTGAACCGTGCCGCCATTCTCCAGGTTGCCGCCGATAGTGGTTTTAGCGACACGCAGT‑‑GCCCCCCCCC‑‑CAGGCATAACGTTCATATCACCTGCAGTGGTGACATTTCCCGACATCACACCg < 2:1198926/138‑1 (MQ=255) ccccccTTCGCTATTCTTTGGACCCGGCCCGCGATACTCAAGTTTGCGTCCGATAATGCTTTTAGGGCCACGCGGG‑‑GCCCCCCCCC‑‑CAGGCAGAACGTTCATATCACCTGCAGTGGTGACAATTCCCGACATCACACCg < 2:1057508/139‑1 (MQ=255) ccccccTTCGCTATTCATTTGAACCGTGCCGCCATTCTCCAGGTTGCCGCCGATAGTTGTTTTAGCGACACGCAGT‑‑GCCCCCCCCC‑‑CAGGCATAACGTTCATATCACCTGCAGTGGTGACATTTCCCGACATCACACCg < 2:887189/139‑1 (MQ=255) ccccccTTCGCTATTCATTTGAACCGTGCCGCCATTCTCCAGGTTGCCGCCGATAGTGGTTTTAGCGACACGCAGT‑‑GCCCCCCCCC‑‑CAGGCATAACGTTCATATCACCTGCAGTGGTGACATTTCCCGACATCACACCg < 1:721221/139‑1 (MQ=255) ccccccTTCGCTATTCATTTGAACCGTGCCGCCATTCTCCAGGTTGCCGCCGATAGTGGTTTTAGCGACACGCAGT‑‑GCCCCCCCCC‑‑CAGGCATAACGTTCATATCACCTGCAGTGGTGACATTTCCCGACATCACACCg < 1:131410/139‑1 (MQ=255) ccccccTTCGCTATTCATTTGAACCGTGCCGCCATTCTCCAGGTTGCCGCCGATAGTGGTTTTAGCGACACGCAGT‑‑GCCCCCCCCC‑‑CAGGCATAACGTTCATATCACCTGCAGTGGTGACATTTCCCGACATCACACCg < 1:1228321/139‑1 (MQ=255) ccccTTCGCTATTCCTTTGAACCGTGCCCCCATTCTCCAGGTTGCCGCCGATAGTGGTTTTAGCGACACGCAGT‑‑GCCCCCCCCC‑‑CAGGCATAACGTTCATATCACCTGCAg < 2:767193/111‑1 (MQ=255) ccccTTCGCTATTCATTTGAACCGTGCCGCCATTCTCCAGGTTGCCGCCGATAGTGGTTTTAGCGACACGCAGT‑‑GCCCCCCCCC‑‑CAGGCATAACGTTCATATCACCTGCAg > 1:767193/1‑111 (MQ=255) cTTCGCTATTCATTTGAACCGTGCCGCCATTCTCCAGGTTGCCGCCGATAGTGGTTTTAGCGACACGCAGT‑‑GCCCCCCCCC‑‑CAGGCATAACGTTCATATCACCTGCAGTGGTGACATTTCCCGACATCACACCGCTGtt < 2:1113413/139‑1 (MQ=255) cGCTATTCATTTGAACCGTGCCGCCATGCTCCAGGTTGCCGCCGATAGTGGTTTTAGCGACACGCAGT‑‑GCCCCCCCCC‑‑CACGGCTGAGCTTTATCTCACATGCATCGCTCACACTGCCCGACATCAAACCGCTGtgctg > 2:492419/1‑135 (MQ=255) ttGAACCGTGCCGCCATTCTCCAGGTTGCCGCCGATAGTGGTTTTAGCGACACGCAGT‑‑GCCCCCCCCC‑‑CAGGCATAACGTTc < 2:197589/82‑1 (MQ=255) ttGAACCGTGCCGCCATTCTCCAGGTTGCCGCCGATAGTGGTTTTAGCGACACGCAGT‑‑GCCCCCCCCC‑‑CAGGCATAACGTTc > 1:197589/1‑82 (MQ=255) ccGTGCCGCCATTCTCCAGGTTGCCGCCGATAGTGGTTTTAGCGACACGCAGT‑‑G‑‑ccccccc‑‑cc < 2:333833/63‑2 (MQ=255) ccGTGCCGCCATTCTCCAGGTTGCCGCCGATAGTGGTTTTAGCGACACGCAGT‑‑G‑‑ccccccc‑‑cc > 1:333833/1‑62 (MQ=255) gTGCCGCCATTCTCAGCGTTGGAGCCGTTTGTGGTTTTAGCGACACGCAGTACC‑‑CCCCCCC‑‑CAGGCATAACGTTCATATCACCTGCAGTGATGACATTTCCCGACATCACACCGCTGTTATGGATATTAATGTGTTGAc < 2:1119720/139‑1 (MQ=255) tGCCGCCATTCTCCAGGTTGCCGCCGATAGTGGTTTTAGCGACACGCAGT‑‑GCCCCCCCCC‑‑CAGGCATAACGTTCATATCACCTGCAGTGGTGACATTTCCCGACATCACACCGCTGTTAt < 1:614358/120‑1 (MQ=255) tGCCGCCATTCTCCAGGTTGCCGCCGATAGTGGTTTTAGCGACACGCAGT‑‑GCCCCCCCCC‑‑CAGGCATAACGTTCATATCACCTGCAGTGGTGACATTTCCCGACATCACACCGCTGTTAt > 2:614358/1‑120 (MQ=255) gccATTCTCCAGGTTGCCGCCGATAGTGGTTTTAGCGACACGCAGT‑‑GCCCCCCCCC‑‑CATGCATAACGTTCATATCACCTGCAGTGGTGACATTTCCCGACATCACACCGCTGTTATGGATATTAATGTGTTGACTTGcc < 2:1139039/139‑1 (MQ=255) gccATTCTCCAGGTTGCCGCCGATAGTGGTTTTAGCGACACGCAGT‑‑GCCCCCCCCC‑‑CAGGCATAACGTTCATATCACCTGCAGTGGTGACATTTCCCGACATCACACCGCTGTTATGGATATTAATGTGTTGACTTGcc < 2:464908/139‑1 (MQ=255) gccATTCTCCAGGTTGCCGCCGATAGTGGTTTTAGCGACACGCAGT‑‑GCCCCCCCCC‑‑CAGGCATAACGTTCATATCACCTGCAGTGGTGACATTTCCCGACATCACACCGCTGTTATGGATATTAATGTGTTGACTTGcc < 2:872556/139‑1 (MQ=255) agacagcttcAGTTTGCCGCCGATAGTGGTTTTAGCGAACCGCAGT‑‑GCCCCCCCCC‑‑CAGGCATAACGTTCATATCACCTGCAGTGGTGACATTTCCCGACATCACACCTCTGTTATGGATATTAATGTGTTGACTTGcc < 2:1189257/130‑1 (MQ=255) cgccgATAGTGGTTTTAGCGACACGCAGT‑‑GCCCCCCCCC‑‑CCGGCATAACGTTCATATCACCTGCAGGGGTGACATTTCCCGACATCACACAGCTGTTATGGATATTAATGTGTTGACTTGCCATATAAATGGcctgtct > 1:1189257/1‑133 (MQ=255) cgccgATAGTGGTTTTAGCGACACGCAGT‑‑GCCCCCCCCC‑‑CAGGCATAACGTTCATATCACCTGCAGTGGTGACATTTcc < 2:1314582/79‑1 (MQ=255) cgccgATAGTGGTTTTAGCGACACGCAGT‑‑GCCCCCCCCC‑‑CAGGCATAACGTTCATATCACCTGCAGTGGTGACATTTcc > 1:1314582/1‑79 (MQ=255) tAGTGGTTTTAGCGACACGCAGT‑‑GCCCCCCCCC‑‑CAGGCATAACGTTCATATCACCGGCGGTGGTGACATTTCCCGACATCACACCGCTGTTATGGATATTAATGTGTTGACTTGCCATATTAATGACAGAGCCGAAAcc > 2:389217/1‑139 (MQ=255) || AACGTCATCAGGCCATTGTTTCCGGTATAGTTGCCGTTAACGGTCAGTACATTCCCCGGTTTCCCCCCTTCGCTATTCATTTGAACCGTGCCGCCATTCTCCAGGTTGCCGCCGATAGTGGTTTTAGCGACACGCAGT‑‑G‑‑CCCCCCC‑‑CAGGCATAACGTTCATATCACCTGCAGTGGTGACATTTCCCGACATCACACCGCTGTTATGGATATTAATGTGTTGACTTGCCATATTAATGGCAGAGTCGGAACC > NC_000913/1593986‑1594237 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |