| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 2,600,609 | (C)5→6 | coding (132/471 nt) | bcp → | peroxiredoxin, thiol peroxidase, thioredoxin‑dependent |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 2,600,604 | 1 | . | C | 94.4% | 122.3 / ‑0.7 | 36 | coding (127/471 nt) | bcp | peroxiredoxin, thiol peroxidase, thioredoxin‑dependent |
| Reads supporting (aligned to +/- strand): ref base . (1/1); new base C (18/16); total (19/17) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
TGGAGTTAAGTAATGAATCCACTGAAAGCCGGTGATATCGCACCGAAATTTAGCTTGCCGGATCAAGACGGAGAACAAGTTAATTTGACCGACTTCCAGGGACAGCGTGTTCTGGTTTATTTCTACCCGAAAGCCATG‑A‑CCCC‑CGGCTGTACCGTACAGGCCTGCGGCTTACGCGATAACATGGATGAGTTGAAAAAAGCGGGCGTTGATGTGCTGGGTATCAGCACCGATAAACCCGAAAAACTCTCCCGTTTTGCGGAAAAAGAGCTGC > NC_000913/2600466‑2600736 | tGGAGTTAAGTAATGAATCCACTGAAAGCCGGTGATATCGCACCGAAATTTAGCTTGCCGGATCAAGACGGAGAACAAGTTAATTTGACCGACTTCCAGGGACAGCGTGTTCTGGTTTATTTCTACCCGAAAGCCATG‑a > 1:1143312/1‑139 (MQ=255) aGTTAAGTAATGAATCCACTGAAAGCCGGTGATATCGCACCGAAATTTAGCTTGCCGGATCAAGACGGAGAACAAGTTAATTTGACCGACTTCCAGGGACAGCGTGTTCTGGTTTATTTCTACCCGAAAGCCATG‑A‑ccc < 2:597672/139‑1 (MQ=255) gTTAAGTAATGAATCCACTGAAAGCCGGTGATATCGCACCGAAATTTAGCTTGCCGGATCAAGACGGAGAACAAGTTAATTTGACCGACTTCCAGGGACAGCGTGTTCTGGTTTATTTCTACCCGAAAGCCATG‑A‑cccc < 1:422178/139‑1 (MQ=255) aGTAATGAATCCACTGAAAGCCGGTGATATCGCACCGACATTTAGCTTGCCGGGTCAAGACGGAGAACAAGTTAATATGACCGACTTCCAGCGACAGCGCGTTCTGGTTTATTTCTACCCGAAAGCCATG‑A‑cccc‑ccgg > 2:939511/1‑136 (MQ=255) aGTAATGAATCCACTGAAAGCCGGTGATATCGCACCGAAATTTAGCTTGCCGGATCAAGACGGAGAACAAGTTAATTTGACCGACTTCCAGGGACAGCGTGTTCTGGTTTATTTCTACCCGAAAGCCATG‑A‑cccc‑ccgg > 1:494344/1‑136 (MQ=255) aGTAATGAATCCACTGAAAGCCGGTGATATCGCACCGAAATTTAGCTTGCCGGATCAAGACGGAGAACAAGTTAATTTGACCGACTTCCAGGGACAGCGTGTTCTGGTTTATTTCTACCCGAAAGCCATG‑A‑cccc‑ccgg < 2:495477/139‑4 (MQ=255) aGTAATGAATCCACTGAAAGCCGGTGATATCGCACCGAAATTTAGCTTGCCGGATCAAGACGGAGAACAAGTTAATTTGACCGACTTCCAGGGACAGCGTGTTCTGGTTTATTTCTACCCGAAAGCCATG‑A‑cccc‑ccgg < 2:582469/139‑4 (MQ=255) aaTGAATCCACTGAAAGCCGGTGATATCGCACCGAAATTTAGCTTGCCGGATCAAGACGGAGAACAAGTTAATTTGACCGACTTCCAGGGACAGCGTGTTCTGGTTTATTTCTACCCGAAAGCCATG‑ACCCCC‑CGGCTg < 1:252764/139‑1 (MQ=255) tGAATCCACTGAAAGCCGGTGATATCGCACCGAAATTTAGCTTGCCAGATCAAGACGGAGAACAAGTTAATTTGACCGACTTCCAGGGACAGCGTGTTCTGGTTTATTTCTACCCGAAAGCCATG‑ACCCCC‑CGGCTGTa < 1:124984/139‑1 (MQ=255) gTGATATCGCACCGAAATTTAGCTTGCCGGATCAAGACGGAGAACAAGTTAATTTGACCGACTTCCAGGGACAGCGTGTTCTGGTTTATTTCTACCCGAAAGCCATG‑ACCCCC‑CGGCTGTACCGTACAGGCCTGCGGCt < 2:1143312/139‑1 (MQ=255) tGATATCGCACCGAAATTTAGCTTGCCGGATCAAGACGGAGAACAAGTTAATTTGACCGACTTCCAGGGACAGCGTGTTCTGGTTTATTTCTACCCGAAAGCCATG‑ACCCCC‑CGGCTGTACCGTACAGGCCTGCGGCtt < 2:669897/139‑1 (MQ=255) tGATATCGCACCGAAATTTAGCTTGCCGGATCAAGACGGAGAACAAGTTAATTTGACCGACTTCCAGGGACAGCGTGTTCTGGTTTATTTCTACCCGAAAGCCATG‑ACCCCC‑CGGCTGTACCGTACAGGCCTGCGGCtt > 1:669897/1‑139 (MQ=255) cGCACCGAAATTTAGCTTGCCGGATCAAGACGGAGAACAAGTTAATTTGACCGACTTCCAGGGACAGCGTGTTCTGGTTTATTTCTACCCGAAAGCCATG‑ACCCCC‑CGGCTGTACCGTACAGGCCTGCGGCTTACGCGa < 2:33958/139‑1 (MQ=255) cACCGAAATTTAGCTTGCCGGATCAAGACGGAGAACAAGTTAATTTGACCGACTTCCAGGGACAGCGTGTTCTGGTTTATTTCTACCCGAAAGCCATG‑ACCCCC‑CGGCTGTa > 1:358895/1‑112 (MQ=255) cACCGAAATTTAGCTTGCCGGATCAAGACGGAGAACAAGTTAATTTGACCGACTTCCAGGGACAGCGTGTTCTGGTTTATTTCTACCCGAAAGCCATG‑ACCCCC‑CGGCTGTa < 2:358895/112‑1 (MQ=255) aCCGAAATTTAGCTTGCCGGATCAAGACGGAGAACAAGTTAATTTGACCGACTTCCAGGGACAGCGTGTTCTGGTTTATTTCTACCCGAAAGCCATG‑ACCCCC‑CGGCTGTACCGTACAGGCCTGCGGCTTACGCGa < 2:913439/136‑1 (MQ=255) aCCGAAATTTAGCTTGCCGGATCAAGACGGAGAACAAGTTAATTTGACCGACTTCCAGGGACAGCGTGTTCTGGTTTATTTCTACCCGAAAGCCATG‑ACCCCC‑CGGCTGTACCGTACAGGCCTGCGGCTTACGCGa > 1:913439/1‑136 (MQ=255) tGCCGGATCAAGACGGATAACAAGTTAATTTGACCGACTTCCAGGGACAGCGTGTTCTGGTTTATTTATACCCGAAAGCCATG‑ACCCCC‑CGGCTGTACCGTACAGGCCTGCGGCTTACGCGATAACATGGATGAGTTGa > 1:821147/1‑139 (MQ=255) gCCGGATCAAGACGGAGAACAAGTTAATTTGACCGACTTCCAGGGACAGCGTGTTCTGGTTTATTTCTACCCGAAAGCCATG‑ACCCCC‑CGGCTGTACCGTACAGGCCTGCGGCTTACGCGa > 2:1122746/1‑121 (MQ=255) gCCGGATCAAGACGGAGAACAAGTTAATTTGACCGACTTCCAGGGACAGCGTGTTCTGGTTTATTTCTACCCGAAAGCCATG‑ACCCCC‑CGGCTGTACCGTACAGGCCTGCGGCTTACGCGa < 1:1122746/121‑1 (MQ=255) aTCAAGACGGAGAACAAGTTAATTTGACCGACTTCCAGGGACAGCGTGTTCTGGTTTATTTCTACCCGAAAGCCATG‑ACCCCC‑CGGCTGTACCGTACAGGCCTGCGGCTTACGCGATAACATGGATGAGTTGAAAAAAg > 2:49006/1‑139 (MQ=255) aCGGAGAACAAGTTAATTTGACCGACTTCCAGGGACAGCGTGTTCTGGTTTATTTCTACCCGAAAGCCATG‑ACCCCC‑CGGCTGTACCGTACAGGCCTGCGGCTTACGCGATAACATGGATGAGTTGAAAAAAGCGGGCg < 2:427743/139‑1 (MQ=255) gaACAAGTTAATTTGACCGACTTCCAGGGACAGCGTGTTCTGGTTTATTTCTACCCGAAAGCCATG‑ACCCCC‑CGGCTGTACCGTACAGGCCTGCGGCTTACGCGATAACATGGATGAGTTGAAAAAAGCGGGCGTTGac < 2:821147/139‑2 (MQ=255) aaGTTAATTTGACCGACTTCCAGGGGCAGCGTGTTCTGGTTTATTTCTACCCGAAAGCCATG‑ACCCCC‑CGGCTGTACCGTACAGGCCTGCGGCTTACGCGATAACATGGATGAGTTGAAAAAAGCGGGCGTTGATGTGc > 1:573784/1‑139 (MQ=255) aaGTTAATTTGACCGACTTCCAGGGACAGCGTGTTCTGGTTTATTTCTACCCGAAAGCCATG‑A‑CCCCACGGCTGTACCGTACAGGCCTGCGGCTTACGCGATAACATGGATGAGTTGAAAAAAGCGGGCGTTGATGTGc < 1:939511/139‑1 (MQ=255) gTTAATTTGACCGACTTCCAGGGACAGCGTGTTCTGGTTTATTTCTACCCGAAAGCCATG‑ACCCCC‑CGGCTGTACCGTACAGGCCTGCGGCTTACGCGa < 1:750922/99‑1 (MQ=255) gTTAATTTGACCGACTTACAGGGACAGCGTGTTCTGGTTTATTTCTACCCGAAAGCCATG‑ACCCCC‑CGGCTGTACCGTACAGGCCTGCGGCTTACGCGa > 2:750922/1‑99 (MQ=255) ctgatttCCAGTGAAAGCGTGTTCGGGTTTATTCCTACCCGCAAGCTATGAA‑TCCC‑CTGCTGAACCGTACACGGATGCGGCTTACGCCATAATATGGATGACTTTCATAAAGCGGGCCTTGATGTGCTGGGTATCAGCa > 2:136029/6‑139 (MQ=255) cAGCGTGTTCTGGTTTATTTCTACCCGAAAGCCATG‑ACCCCC‑CGGCTGTACCGTACAGGCCTGCGGCTTACGCGATAACATGGa < 2:538459/84‑1 (MQ=255) cAGCGTGTTCTGGTTTATTTCTACCCGAAAGCCATG‑ACCCCC‑CGGCTGTACCGTACAGGCCTGCGGCTTACGCGATAACATGGa > 1:538459/1‑84 (MQ=255) cGTGTTCTGGTTTATTTCTACCCGAAAGCCATG‑ACCCCC‑CGGCTGTACCGTACAGGCCTGCGGCTTACGCGATAACATGGATGAGTTGAAAAAAGCGGGCGTTGATGTGc < 1:1016078/110‑1 (MQ=255) cGTGTTCTGGTTTATTTCTACCCGAAAGCCATG‑ACCCCC‑CGGCTGTACCGTACAGGCCTGCGGCTTACGCGATAACATGGATGAGTTGAAAAAAGCGGGCGTTGATGTGc > 2:1016078/1‑110 (MQ=255) cGTGTTCTGGTTTATTTCTACCCGAAAGCCATG‑ACCCCC‑CGGCTGTACCGTACAGGCCTGCGGCTTACGCGATAACATGGATGAGTTGAAAAAAGCGGGCGTTGATGTGCTGGGTATCAGCACCGATAAACCCGaaaaa > 1:551234/1‑139 (MQ=255) cGTGTTCTGGTTTATTTCTACCCGAAAGCCATG‑ACCCCC‑CGGCTGTACCGTACAGGCCTGCGGCTTACGCGATAACATGGATGAGTTGAAAAAAGCGGGCGTTGATGTGCTGGGTATCAGCACCGATAAACCCGaaaaa > 1:1170104/1‑139 (MQ=255) ttCTGGTTTATTTCTACCCGAAAGCCATG‑ACCCCC‑CGGCTGTACCGTACAGGCCTGCGGCTTACGCGATAACATGGATGAGTTGAAAAAAGCGGGCGTTg > 2:539992/1‑100 (MQ=255) ttCTGGTTTATTTCTACCCGAAAGCCATG‑ACCCCC‑CGGCTGTACCGTACAGGCCTGCGGCTTACGCGATAACATGGATGAGTTGAAAAAAGCGGGCGTTg < 1:539992/100‑1 (MQ=255) gTTTATTTCTACCCGAAAGCCATG‑ACCCCC‑CGGCTGTACCGTACAGGCCTGCGGCTTACGCGATAACATGGATGAGTTGAAAAAAGCGGGCGTTGATGTGCTGGGTATCAGCACCGATAAACCCGAAAAACTCTCCCGt > 2:650417/1‑139 (MQ=255) tttCTACCCGAAAGCCATG‑ACCCCC‑CGGCTGTACCGTACAGGCCTGCGGCTTACGCGATAACATGGATGAGTTGAAAAAAGCGGGCGTTGATGTGCTGGGTATCAGCACCGATAAACCCGAAAAACTCTCCCGTTTTGc > 2:783217/1‑139 (MQ=255) aCCCGAAAGCCATG‑ACCCCC‑CGGCTGTACCGTACAGGCCTGCGGCTTACGCGATAACATGGATGAGTTGAAAAAAGCGGGCGTTGATGTGCTGGGTATCAGCACCGATAAACCCGAAAAACTCTCCCGTTTTGCGGaaa > 2:423349/1‑139 (MQ=255) aaaGCCATG‑ACCCCC‑CGGCTGTACCGTACAGGCCTGCGGCTTACGCGATAACATGGATGAGTTGAAAAAAGCGGGCGTTGATGTGCTGGGTATCAGCACCGATAAACCCGAAAAACTCTCCCGTTTTGCGGAAAAagag < 2:1170104/139‑1 (MQ=255) aaaGCCATG‑ACCCCC‑CGGCTGTACCGTACAGGCCTGCGGCTTACGCGATAACATGGATGAGTTGAAAAAAGCGGGCGTTGATGTGCTGGGTATCAGCACCGATAAACCCGAAAAACTCTCCCGTTTTGCGGAAAAagag > 2:700406/1‑139 (MQ=255) aaGCCATG‑ACCCCC‑CGGCTGTACCGTACAGGCCTGCGGCTTACGCGATAACATGGATGAGCTAAAAAAAGCGGGCGTTGATGTGCTGGGTACCAGCACCGATAAACCCGAAAAACTCTCCCGTTTTGCGGAAAAAGAgc > 1:1168546/1‑139 (MQ=255) ccATG‑ACCCCC‑CGGCTGTACCGTACAGGCCTGCGGCTTACGCGATAATATGGATGAGTTGAAAAAAGCGGGCGTTGATGTGCTGGGTATCAGCACCGATAAACCCGAAAAACTCTCCCGTTTTGCGGAAAAAGAgctgc < 1:783217/139‑1 (MQ=255) | TGGAGTTAAGTAATGAATCCACTGAAAGCCGGTGATATCGCACCGAAATTTAGCTTGCCGGATCAAGACGGAGAACAAGTTAATTTGACCGACTTCCAGGGACAGCGTGTTCTGGTTTATTTCTACCCGAAAGCCATG‑A‑CCCC‑CGGCTGTACCGTACAGGCCTGCGGCTTACGCGATAACATGGATGAGTTGAAAAAAGCGGGCGTTGATGTGCTGGGTATCAGCACCGATAAACCCGAAAAACTCTCCCGTTTTGCGGAAAAAGAGCTGC > NC_000913/2600466‑2600736 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |