| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 1,425,980 | G→A | pseudogene (351/453 nt) | ydaY → | pseudogene, Rac prophage,Phage or Prophage Related |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,425,980 | 0 | G | A | 100.0% | 140.5 / NA | 45 | pseudogene (351/453 nt) | ydaY | pseudogene, Rac prophage,Phage or Prophage Related |
| Reads supporting (aligned to +/- strand): ref base G (0/0); new base A (22/23); total (22/23) | |||||||||||
TGGAATATACGGCAGAACGAGGGATCGCGCTGCTTAAGCAGAATCCAGAGTTGTACTGGCAGATCCTTGCAGAAGCAGCCAGCATCGCCCAGGGTAAAGAGCAGCAGAAG‑CAGGATACGATAAAAAAGCCATAGCTGCCCAGCGGTGGTTATCGGAGTTCGGGGGAGAAAGGGGGGAAAAGGCAAGATGGAAGCGAGAAAAACTCAGGTTGCCACCGATACCGGAACCAGAAATAGACCCGGTGCTTAAGGAGTTG > NC_000913/1425847‑1426102 | tGGAATATACGGCAGAACGAGGGATCGCGCTGCTTAAGCAGAATCCAGAGTTGTACTGGCAGATCCTTGCAGAAGCAGCCAGCATCGCCCAGGGTAAAGAGCAGCAGAAG‑CAGGATACGATAAAAAAGCCATAACTGcc < 2:412172/139‑1 (MQ=255) aaTATACGGCAGAACGAGGGATCGCGCTGCTTAAGCAGAATCCAGAGTTGTACTGGCAGATCCTTGCAGAAGCAGCCAGCATCGCCCAGGGTAAAGAGCAGCAGAAG‑CAGGATACGATAAAAAAGCCATAACTGCCCAg < 2:717546/139‑1 (MQ=255) cAGAACGAGGGATCGCGCTGCTTAAGCAGAATCCAGAGTTGTACTGGCAGATCCTTGCAGAAGCAGCCAGCATCGCCCAGGGTAAAGAGCAGCAGAAG‑CAGGATACGATAAAAAAGCCATAACTGCCCAGCGGTGGTTa > 2:86349/1‑139 (MQ=255) cAGAACGAGGGATCGCGCTGCTTAAGCAGAATCCAGAGTTGTACTGGCAGATCCTTGCAGAAGCAGCCAGCATCGCCCAGGGTAAAGAGCAGCAGAAG‑CAGGATACGATAAAAAAGCCATAACTGCCCAGCGGTGGTTa > 1:360031/1‑139 (MQ=255) cAGAACGAGGGATCGCGCCGCTTAAGCAGACTCCAGAGTTGTACTGGCAGATCCTTGCAGAAGCAGCCAGCATCGCCCAGGGTAAAGAACAGCAGTAG‑CAGGATACGATAAAAAAGCCATAACTGCCCAGCGGTGGTTa > 2:326423/1‑139 (MQ=255) aaCGAGGGATCGCGCTGCTTAAGCAGAATCCAGAGTTGTACTGGCAGATCCTTGCAGAAGCAGCCAGCATCGCCCAGGGTAAAGAGCAGCAGAAG‑CAGGATACGATAAAAAAGCCATAACTGCCCAGCGGTGGTTATCg > 1:1108471/1‑139 (MQ=255) cGAGGGATCGCGCTGCTTAAGCAGAATCCAGAGTTGTACTGGCAGATCCTTGCAGAAGCAGCCAGCATCGCCCAGGGTAAAGAGCAGCAGAAG‑CAGGATACGATAAAAAAGCCATAACTGCCCAGCGGTGGTTATCGGa > 2:1210767/1‑139 (MQ=255) gggATCGCGCTGCTTAAGCAGAATCCAGAGTTGTACTGGCAGATCCTTGCAGAAGCAGCCAGCATCGCCCAGGGTAAAGAGCAGCAGAAG‑CAGGATACGATAAAAAAGCCATAACTGCCCAGCGGTGGTTATCGGAGtt < 1:1129112/139‑1 (MQ=255) gATCGCGCTGCTTAAGCAGAATCCAGAGTTGTACTGGCAGATCCTTGCAGAAGCAGCCAGCATCGCCCAGGGTAAAGAGCAGCAGAAG‑CAGGATACGATAAAAAAGCCATAACTGCCCAGCGGTGGTTATCGGAGTTCg < 2:525897/139‑1 (MQ=255) gctTAAGCAGAATCCAGAGTTGTACTGGCAGATCCTTGCAGAAGCAGCCAGCATCGCCCAGGGTAAAGAGCAGCAGAAG‑CAGGATACGATAAAAAAGCCATAACTGCCCAGCGGTGGTTATCGGAGTTCGGGGGAGaaa > 1:820224/1‑139 (MQ=255) cAGAGTTGTACTGGCAGATCCTTGCAGAAGCAGCCAGCATCGCCCAGGGTAAAGAGCAGCAGAAG‑CAGGATACGATAAAAAAGCCATAACTGCCCAGCGGTGGTTATCGGAGTTCGGGGGAGAAAGGGGGGAAAAGGCa < 1:570890/139‑1 (MQ=255) gCAGAAGCAGCCAGCATCGCCCAGGGTAAAGAGCAGCAGAAG‑CAGGATACGATAAAAAAGCCATAACTGCCCAGCGGTGGTTATCGGAGTTCGGGGGAGAAAGGGGGGAAAAGGCAAGATGGAAGCGAGAAAAACTCAg > 2:1126799/1‑139 (MQ=255) gCAGAAGCAGCCAGCATCGCCCAGGGTAAAGAGCAGCAGAAG‑CAGGATACGATAAAAAAGCCATAACTGCCCAGCGGTGGTTATCGGAGTTCGGGGGAGAAAGGGGGGAAAAGGCAAGATGGAAGCGAGAAAAACTCAg > 1:754852/1‑139 (MQ=255) agcagcCAGCATCGCCCAGGGTAAAGAGCAGCAGAAG‑CAGGATACGATAAAAAAGCCATAACTg > 1:1073607/1‑64 (MQ=255) agcagcCAGCATCGCCCAGGGTAAAGAGCAGCAGAAG‑CAGGATACGATAAAAAAGCCATAACTg < 2:1073607/64‑1 (MQ=255) gcagcCAGCATCGCCCAGGGTAAAGAGCAGCAGAAG‑CAGGATACGATAAAAAAGCCATAACTGCCCAGCGGTGGTTATCGGAGTTCgg < 2:1003424/88‑1 (MQ=255) gcagcCAGCATCGCCCAGGGTAAAGAGCAGCAGAAG‑CAGGATACGATAAAAAAGCCATAACTGCCCAGCGGTGGTTATCGGAGTTCgg > 1:1003424/1‑88 (MQ=255) gccagcATCGCCCAGGGTAAAGAGCAGCAGAAG‑CAGGATACGATAAAAAAGCCATAACTGCCCAGCGGTGGTTATCGGAGTTCGGGGGAGAAAGGGGGGAAAAGGCAAGATGGAAGCGAGAAAAACTCAGGTTGCCAcc < 2:1108471/139‑1 (MQ=255) cATCGCCCAGGGTAAAGAGCAGCAGAAG‑CAGGATACGATAAAAAAGCCATAACTGCCCAGCggt > 2:158347/1‑64 (MQ=255) cATCGCCCAGGGTAAAGAGCAGCAGAAG‑CAGGATACGATAAAAAAGCCATAACTGCCCAGCggt < 1:158347/64‑1 (MQ=255) ccAGGGTAAAGAGCAGCAGAAG‑CAGGATACGATAAAAAAGCCATAACTGCCCAGCGGTGGTTATCGGAGTTCGGGGGAGAAAGGGGGGa > 2:122704/1‑89 (MQ=255) ccAGGGTAAAGAGCAGCAGAAG‑CAGGATACGATAAAAAAGCCATAACTGCCCAGCGGTGGTTATCGGAGTTCGGGGGAGAAAGGGGGGa < 1:122704/89‑1 (MQ=255) agagCAGCAGAAG‑CAGGATACGATAAAAAAGCCATAACTGCCCAGCGGTGGTTATCGGAGTTCGGGGGAGAAAGGGGGGa > 2:108244/1‑80 (MQ=255) agagCAGCAGAAG‑CAGGATACGATAAAAAAGCCATAACTGCCCAGCGGTGGTTATCGGAGTTCGGGGGAGAAAGGGGGGa < 1:108244/80‑1 (MQ=255) agagCAGCAGAAG‑CAGGATACGACAAAAAAGCCATAACTGCCCAGCGGAGGTTATCGGAGTTCCGGGGAGAAAGAGGTGAAAAGGCAAGATGGAATGGAGAAAAACAGAGGTTGCCACCAAAAAAGCAACCATAAATac > 2:855323/1‑138 (MQ=255) cagcagAAG‑CAGGATACGATAAAAAAGCCATAACTGCCCAGCGGTGGTTATCGGAGTTCGGGGGAGAAAGGGGGGAAAAGGCAAGATGGAAGCGAGAAAAACTCAGGTTGCCACCGATACCGGAACCAGAAATAGAccc < 2:754852/139‑1 (MQ=255) agcagAAGACGGCATACGATATAAAAGCCATAACTGCCCAGCGGTGGTTATCGGAGTTCGGGGGAGAAAGGGGGGAAAAGGCAAGATGGAAGCGAGAAAAACTCAGGTTGCCACCGATACCGGAACCAGATATAGAccc < 1:855323/139‑1 (MQ=255) agcagAAG‑CAGGATACGATAAAAAAGCCATAACTGCCCAGCGGTGGTTATCGGAGTTCg < 2:420942/59‑1 (MQ=255) agcagAAG‑CAGGATACGATAAAAAAGCCATAACTGCCCAGCGGTGGTTATCGGAGTTCg > 1:420942/1‑59 (MQ=255) agcagAAG‑CAGGATACGATAAAAAAGCCATAACTGCCCAGCGGTGGTTATCGGAGTTCGGGGGAGAAAGGGGGGAAAAGGCAAGATGGAAGCGAGAAAAACTCAGGTTGCCACCGATACCGGAACCAGAAATAGACCCg < 1:1210767/139‑1 (MQ=255) agcagAAG‑CAGGATACGATAAAAAAGCCATAACTGCCCAGCGGTGGTTATCGGAGTTCGGGGGAGAAAGGGGGGAAAAGGCAAGATGGAAGCGAGAAAAACTCAGGTTGCCACCGATACAGGAACAAGAAATAGACCCg > 2:924249/1‑139 (MQ=255) aaG‑CAGGATACGATAAAAAAGCCATAACTGCCCAGCGGTGGTTATCGGAGTTCGGGGGAGAAAGGGGGGAAAAGGCAAGATGGAAGCGAGAAAAACTCAGGTTGCCACCGATACCGGAACCAGAAATAGACCCGGTGCt < 1:86349/139‑1 (MQ=255) aTACGATAAAAAAGCCATAACTGCCCAGCGGTGGTTATCGGAGTTCGGGGGAGAAAGGGGGGAAAAGGCAAGATGGAAGCGAGAAAAACTCAGGTTGCCACCGATACCGGAACCAGAAATAGACCCGGTGCTTAAGGAg < 2:820224/139‑1 (MQ=255) cGATAAAAAAGCCATAACTGCCCAGCGGTGGTTATCGGAGTTCGGGGGAGAAAGGGGGGAAAAGGCAAGATGGAAGCGAGAAAAACTCAGGTTGCCACCGATACCg > 1:392874/1‑106 (MQ=255) cGATAAAAAAGCCATAACTGCCCAGCGGTGGTTATCGGAGTTCGGGGGAGAAAGGGGGGAAAAGGCAAGATGGAAGCGAGAAAAACTCAGGTTGCCACCGATACCg < 2:392874/106‑1 (MQ=255) cGATAAAAAAGCCATAACTGCCCAGCGGTGGTTATCGGAGTTCGGGGGAGAAAGGGGGGAAAAGGCAAGATGGAAGCGAGAAAAACTCAGGTTGCCACCGATACCGGAACCAGAAATAGACCCGGTGCTTAAGGAgttg > 2:920498/1‑139 (MQ=255) aaaaaaGCCATAACTGCCCAGCGGTGGTTATCGGAGtt > 2:246135/1‑38 (MQ=255) aaaaaaGCCATAACTGCCCAGCGGTGGTTATCGGAGtt < 1:246135/38‑1 (MQ=255) aaaaGCCATAACTGCCCAGCGGTGGTTATCGGAGTTCGGGGGAGAAAGGGGGGAAAAGGCAAGATGGAAGCGAGAAAAACTCAGGTTGCCACCGATACCGGAACCAGAAATAGACCCGGTGCTTAAGGAg < 1:1225751/130‑1 (MQ=255) aaaaGCCATAACTGCCCAGCGGTGGTTATCGGAGTTCGGGGGAGAAAGGGGGGAAAAGGCAAGATGGAAGCGAGAAAAACTCAGGTTGCCACCGATACCGGAACCAGAAATAGACCCGGTGCTTAAGGAg > 2:1225751/1‑130 (MQ=255) ccATAACTGCCCAGCGGTGGTTATCGGAGTTCGGGGGAGAAAGGGGGGAAAAGGCAAGATGGAAGCGAGAAAAACTCAGGTTGCCACCGATACCGGAACCAGAAATAGAccc > 1:707317/1‑112 (MQ=255) ccATAACTGCCCAGCGGTGGTTATCGGAGTTCGGGGGAGAAAGGGGGGAAAAGGCAAGATGGAAGCGAGAAAAACTCAGGTTGCCACCGATACCGGAACCAGAAATAGACCCGGTGCTTa < 2:372948/120‑1 (MQ=255) ccATAACTGCCCAGCGGTGGTTATCGGAGTTCGGGGGAGAAAGGGGGGAAAAGGCAAGATGGAAGCGAGAAAAACTCAGGTTGCCACCGATACCGGAACCAGAAATAGACCCGGTGCTTa > 1:372948/1‑120 (MQ=255) ccATAACGGCCCAGCGGTGGTTATCGGAGTTCGGGGGAGAAAGGGGGGAAAAGGCAAGATGGAAGCGAGAAAAACTCAGGTTGCCACCGATACCGGAACCAGAAATAGAccc < 2:707317/112‑1 (MQ=255) aTAACTGCCCAGCGGTGGTTATCGGAGTTCGGGGGAGAAAGGGGGGAAAAGGCAAGATGGAAGCGAGAAAAACTCAGGTTGCCACCGATACCGGAACCAGAAATa < 2:47713/105‑1 (MQ=255) | TGGAATATACGGCAGAACGAGGGATCGCGCTGCTTAAGCAGAATCCAGAGTTGTACTGGCAGATCCTTGCAGAAGCAGCCAGCATCGCCCAGGGTAAAGAGCAGCAGAAG‑CAGGATACGATAAAAAAGCCATAGCTGCCCAGCGGTGGTTATCGGAGTTCGGGGGAGAAAGGGGGGAAAAGGCAAGATGGAAGCGAGAAAAACTCAGGTTGCCACCGATACCGGAACCAGAAATAGACCCGGTGCTTAAGGAGTTG > NC_000913/1425847‑1426102 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |