| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 200,214 | C→T | P763S (CCA→TCA) | bamA → | BamABCDE complex OM biogenesis outer membrane pore‑forming assembly factor |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 200,214 | 0 | C | T | 100.0% | 218.6 / NA | 67 | P763S (CCA→TCA) | bamA | BamABCDE complex OM biogenesis outer membrane pore‑forming assembly factor |
| Reads supporting (aligned to +/- strand): ref base C (0/0); new base T (33/34); total (33/34) | |||||||||||
GTTCATCACCCCGACGCCGTTTATTAGCGATAAGTATGCTAACTCGGTTCGTACTTCCTTCTTCTGGGATAT‑GGGTACCGTTTGGGATACAAACTGGGATTCCAGCCAATATTCTGGATATCCGGACTATAGTGATCCAAGCAATATCCGTATGTCTGCGGGTATCGCATTACAATGGATGTCCCCATTGGGGCCGTTGGTGTTCTCCTACGCCCAGCCGTTCAAAAAGTACGATGGAGACAAGGCAGAACAGTTCCAGTTTAACATCGGT > NC_000913/200078‑200348 | gTTCATCACCCCGACGCCGTTTATTAGCGATAAGTATGCTAACTCGGTTCGTACTTCCTTCTTCTGGGATAT‑GGGTACCGTTTGGGATACAAACTGGGATTCCAGCCAATATTCTGGATATCCGGACTATAGTGATTCa < 1:934136/139‑1 (MQ=255) tcatcaCCCCGACGCCGTTTATTAGCGATAAGTATGCTAACTCGGTTCGTACTTCCTTCTTCTGGGATAT‑GGGTACCGTTTGGGATACAAACTGGGATTCCAGCCAATATTCTGGATATCCGGACTATAGTGATTCAAg < 2:1153771/139‑1 (MQ=255) atcaCCCCGACGCCGTTTATTAGCGATAAGTATGCTAACTCGGTTCGTACTTCCTTCTTCTGGGATAT‑GGGTACCGTTTGGGATACAAACTGGGATTCCAGCCAATATTCTGGATATCCGGACTATAGTGATTCAAGCa < 2:1287174/139‑1 (MQ=255) atcaCCCCGACGCCGTTTATTAGCGATAAGTATGCTAACTCGGTTCGTACTTCCTTCTTCTGGGATAT‑GGGTACCGTTTGGGATACAAACTGGGATTCCAGCCAATATTCTGGATATCCGGACTATAGTGATTCAAGCa > 1:551255/1‑139 (MQ=255) aCGCCGTTTATTAGCGATAAGTATGCTAACTCGGTTCGTACTTCCTTCTTCTGGGATAT‑GGGTACCGTTTGGGATACAAACTGGGATTCCAGCCAATATTCTGGATATCCGGACTATAGTGATTCAAGCAATATCCGTa < 1:642979/139‑1 (MQ=255) cGCCGTTTATTAGCGATAAGTATGCTAACTCGGTTCGTACTTCCTTCTTCTGGGATAT‑GGGTACCGTTTGGGATACAAACTGGGATTCCAGCCAATATTCTGGATATCCGGACTATAGTGATTCAAg < 2:394740/127‑1 (MQ=255) cGCCGTTTATTAGCGATAAGTATGCTAACTCGGTTCGTACTTCCTTCTTCTGGGATAT‑GGGTACCGTTTGGGATACAAACTGGGATTCCAGCCAATATTCTGGATATCCGGACTATAGTGATTCAAg > 1:394740/1‑127 (MQ=255) tttATTAGCGATAAGTATGCTAACTCGGTTCGTACTTCCTTCTTCTGGGATAT‑GGGTACCGTTTGGGATACAAACTGGGATTCCAGCCAATATTCTGGATATCCGGACTATAGTGATTCAAGCAATATCCGTATGTCTg > 2:1076962/1‑139 (MQ=255) ttattaGCGATAAGTATGCTAACTCGGTTCGTACTTCCTTCTTCTGGGATAT‑GGGTACCGTTTGGGATACAAACTGGGATTCCAGCCAATATTCTGGATATCCGGACTATAGTGATTCAAGCAATATCCGTATGTCTGc < 2:235185/139‑1 (MQ=255) aGCGATAAGTATGCTAACTCGGTTCGTACTTCCTTCTTCTGGGATAT‑GGGTACCGTTTGGGATACAAACTGGGATTCCAGCCAATATTCTGGATATCCGGACTATAGTGATTCAAGCAATATCCGTATGTCTGCGGGTa < 2:1042504/139‑1 (MQ=255) cGATAAGTATGCTAACTCGGTTCGTACTTCCTTCTTCTGGGATATGGGGTACCGTTTGGGATACAAACTGGGATTCCAGCCAATATTCTGGATATCCGGACTATAGTGATTCAAGCAATATCCGTATGTCTGCGGGTAt < 1:276567/139‑1 (MQ=255) cGATAAGTATGCTAACTCGGTTCGTACTTCCTTCTTCTGGGATAT‑GGGTACCGTTTGGGATACAAACTGGGATTCCAGCCAATATTCTGGATATCCGGACTATAGTGATTCAAg < 2:479638/114‑1 (MQ=255) cGATAAGTATGCTAACTCGGTTCGTACTTCCTTCTTCTGGGATAT‑GGGTACCGTTTGGGATACAAACTGGGATTCCAGCCAATATTCTGGATATCCGGACTATAGTGATTCAAg > 1:479638/1‑114 (MQ=255) gATAAGTATGCTAACTCGGTTCGTACTTCCTTCTTCTGGGATAT‑GGGTACCGTTTGGGATACAAACTGGGATTCCAGCCAATATTCTGGATATCCGGACTATAGTGATTCAAGCAATATCCGTATGTCTGCGGGTATCg < 1:703615/139‑1 (MQ=255) aTAAGTATGCTAACTCGGTTCGTACTTCCTTCTTCTGGGATAT‑GGGTACCGTTTGGGATACAAACTGGGATTCCAGCCAATATTCTGGATATCCGGACTATAGTGATTCAAGCAATATCCGTATg > 2:79917/1‑125 (MQ=255) aTAAGTATGCTAACTCGGTTCGTACTTCCTTCTTCTGGGATAT‑GGGTACCGTTTGGGATACAAACTGGGATTCCAGCCAATATTCTGGATATCCGGACTATAGTGATTCAAGCAATATCCGTATg < 1:79917/125‑1 (MQ=255) aTAAGTATGCTAACTCGGTTCGTACTTCCTTCTTCTGGGATAT‑GGGTACCGTTTGGGATACAAACTGGGATTCCAGCCAATATTCTGGATATCCGGACTATAGTGATTCAAGCAATATCCGTATGTCTGCGGGTATCGc < 2:948038/139‑1 (MQ=255) tAAGTATGCTAACTCGGTTCGTACTTCCTTCTTCTGGGATAT‑GGGTACCGTTTGGGATACAAACTGGGATTCCAGCCAATATTCTGGATATCCGGACTATAGTGATTCAAGCAATATCCGTATGTCTGCGGGTATCGCa < 1:1009795/139‑1 (MQ=255) tAAGTATGCTAACTCGGTTCGTACTTCCTTCTTCTGGGATAT‑GGGTACCGTTTGGGATACAAACTGGGATTCCAGCCAATATTCTGGATATCCGGACTATAGTGATTCAAGCAATATCCGTATGTCTGCGGGTATCGCa < 2:287772/139‑1 (MQ=255) tGCTAACTCGGTTCGTACTTCCTTCTTCTGGGATAT‑GGGTACCGTTTGGGATACAAACTGGGATTCCAGCCAATATTCTGGATATCCGGACTATAGTGATTCAAGCa > 2:1314003/1‑107 (MQ=255) tGCTAACTCGGTTCGTACTTCCTTCTTCTGGGATAT‑GGGTACCGTTTGGGATACAAACTGGGATTCCAGCCAATATTCTGGATATCCGGACTATAGTGATTCAAGCa < 1:1314003/107‑1 (MQ=255) tGCTAACTCGGTTCGTACTTCCTTCTTCTGGGATAT‑GGGTACCGTTTGGGATACAAACTGGGATTCCAGCCAATATTCTGGATATCCGGACTATAGTGATTCAAGCAATATCCGTATGTCTGCGGGTATCGCATTACaa < 1:1220900/139‑1 (MQ=255) tGCTAACTCGGTTCGTACTTCCTTCTTCTGGGATAT‑GGGTACCGTTTGGGATACAAACTGGGATTCCAGCCAATATTCTGGATATCCGGACTATAGTGATTCAAGCAATATCCGTATGTCTGCGGGTATCGCATTACaa < 1:1076962/139‑1 (MQ=255) cTCGGTTCGTACTTCCTTCTTCTGGGATAT‑GGGTACCGTTTGGGATACAAACTGGGATTCCAGCCAATATTCTGGATATCCGGACTATAGTGATTCAAGCa > 2:1227395/1‑101 (MQ=255) cTCGGTTCGTACTTCCTTCTTCTGGGATAT‑GGGTACCGTTTGGGATACAAACTGGGATTCCAGCCAATATTCTGGATATCCGGACTATAGTGATTCAAGCa < 1:1227395/101‑1 (MQ=255) tACTTCCTTCTTCTGGGATAT‑GGGTACCGTTTGGGATACAAACTGGGATTCCAGCCAATATTCTGGATATCCGGACTATAGTGATTCAAGCAATATCCGTATGTCTGCGGGTATCGCATTACaa > 1:393513/1‑124 (MQ=255) tACTTCCTTCTTCTGGGATAT‑GGGTACCGTTTGGGATACAAACTGGGATTCCAGCCAATATTCTGGATATCCGGACTATAGTGATTCAAGCAATATCCGTATGTCTGCGGGTATCGCATTACaa < 2:393513/124‑1 (MQ=255) ggATAT‑GGGTACCGTTTGGGATACAAACTGGGATTCCAGCCAATATTCTGGATATCCGGACTATAGTGATTCAAGCAATATCCGTATGTCTGCGGGTATCGCATTACAATGGa < 2:1020025/113‑1 (MQ=255) ggATAT‑GGGTACCGTTTGGGATACAAACTGGGATTCCAGCCAATATTCTGGATATCCGGACTATAGTGATTCAAGCAATATCCGTATGTCTGCGGGTATCGCATTACAATGGa > 1:1020025/1‑113 (MQ=255) ggATAT‑GGGTACCGTTTGGGATACAAACTGGGATTCCAGCCAATATTCTGGATATCCGGACTATAGTGATTCAAGCAATATCCGTATGTCTGCGGGTATCGCATTACAATGGATGTCCCCATTGGGGCCGTTGGTGTtc > 2:351970/1‑139 (MQ=255) ggATAT‑GGGTACCGTTTGGGATACAAACTGGGATTCCAGCCAATATTCTGGATATCCAGACTATAGTGATTCAAGCAATATCCGTATGTCTGCGGGTATCGCATTACAATGGATGTCCCCATTGGGGCCGTTGGTGTtc > 2:873396/1‑139 (MQ=255) gATAT‑GGGTACCGTTTGGGATACAAACTGGGATTCCAGCCAATATTCTGGATATCCGGACTATAGTGATTCAAGCAATATCCGTATGTCTGCGGGTATCGCATTACAATGGATGTCCCCATTGGGGCCGTTGGTGTtct > 2:543003/1‑139 (MQ=255) atat‑GGGTACCGTTTGGGATACAAACTGGGATTCCAGCCAATATTCTGGATATCCGGACTATAGTGATTCAAGCAat < 1:909623/77‑1 (MQ=255) atat‑GGGTACCGTTTGGGATACAAACTGGGATTCCAGCCAATATTCTGGATATCCGGACTATAGTGATTCAAGCAat > 2:909623/1‑77 (MQ=255) t‑GGGTACCGTTTGGGATACAAACTGGGATTCCAGCCAATATTCTGGATATCCGGACTATAGTGATTCAAGCAATATCCGTATGTCTGCggg < 2:384712/91‑1 (MQ=255) t‑GGGTACCGTTTGGGATACAAACTGGGATTCCAGCCAATATTCTGGATATCCGGACTATAGTGATTCAAGCAATATCCGTATGTCTGCggg > 1:384712/1‑91 (MQ=255) t‑GGGTACCGTTTGGGATACAAACTGGGATTCCAGCCAATATTCTGGATATCCGGACTATAGTGATTCAAGCAATATCCGTATGTCTGCGGGTAt > 1:189856/1‑94 (MQ=255) t‑GGGTACCGTTTGGGATACAAACTGGGATTCCAGCCAATATTCTGGATATCCGGACTATAGTGATTCAAGCAATATCCGTATGTCTGCGGGTAt < 2:189856/94‑1 (MQ=255) ccGTTTGGGATACAAACTGGGATTCCAGCCAATATTCTGGATATCCGGACTATAGTGATTCAAGCAATATCCGTATGTCTGCGGGTATCGCATTACAATGGATGTCCCCATTGGGGc > 2:153224/1‑117 (MQ=255) ccGTTTGGGATACAAACTGGGATTCCAGCCAATATTCTGGATATCCGGACTATAGTGATTCAAGCAATATCCGTATGTCTGCGGGTATCGCATTACAATGGATGTCCCCATTGGGGc < 1:153224/117‑1 (MQ=255) ccGTTTGGGATACAAACTGGGATTCCAGCCAATATTCTGGATATCCGGACTATAGTGATTCAAGCAATATCCGTATGTCTGCGGGTATCGCATTACAATGGATGTCCCCATTGGGGCCGTTGGTGTTCTCCTACGCCCa > 1:1224160/1‑139 (MQ=255) ccGTTTGGGATACAAACTGGGATTCCAGCCAATATTCTGGATATCCGGACTATAGTGATTCAAGCAATATCCGTATGTCTGCGGGTATCGCATTACAATGGATGTCCCCATTGGGGCCGTTGGTGTTCTCCTACGCCCa > 1:486305/1‑139 (MQ=255) cGTTTGGGATACAAACTGGGATTCCAGCCAATATTCTGGATATCCGGACTATAGTGATTCAAGCAATATCCGTATGTCTGCGGGTATCGCATTACAATGGATGTCCCCATTGGGGCCGTTGGTGTTCTCCTACGCCCAg > 2:460285/1‑139 (MQ=255) tttGGGATACAAACTGGGATTCCAGCCAATATTCTGGATATCCGGACTATAGTGATTCAAGCAATATCCGTATGTCTGCGGGTATCGCATTACAATGGATGTCCCCATTGGGGCCGTTGGTGTtctc > 2:108903/1‑127 (MQ=255) tttGGGATACAAACTGGGATTCCAGCCAATATTCTGGATATCCGGACTATAGTGATTCAAGCAATATCCGTATGTCTGCGGGTATCGCATTACAATGGATGTCCCCATTGGGGCCGTTGGTGTtctc < 1:108903/127‑1 (MQ=255) tttGGGATACAAACTGGGATTCCAGCCAATATTCTGGATATCCGGACTATAGTGATTCAAGCAATATCCGTATGTCTGCGGGTATCGCATTACAATGGATGTCCCCATTGGGGCCGTTGGTGTTCTCCTACGCCCAGcc > 2:134782/1‑139 (MQ=255) gggATACAAACTGGGATTCCAGCCAATATTCTGGATATCCGGACTATAGTGATTCAAg < 1:722933/58‑1 (MQ=255) gggATACAAACTGGGATTCCAGCCAATATTCTGGATATCCGGACTATAGTGATTCAAg > 2:722933/1‑58 (MQ=255) aCTGGGATTCCAGCCAATATTCTGGATATCCGGACTATAGTGATTCAAGCAATATCCGTATGTCTGCGGGTATCGCATTACAATGGATGTCCCCATTGGGGCCGTTGGTGTTCTCCTACGCCCAGCCGTTCAAAAAGTa < 1:134782/139‑1 (MQ=255) gggATTCCAGCCAATATTCTGGATATCCGGACTATAGTGATTCAAGCAATATCCGTATGTCTGCGGGTATCGCATTACAATGGATGTCCCCATTGGGGCCGTTGGTGTTCTCCTACGCCCAGCCGTTCAAAAAGTACGa > 2:608026/1‑139 (MQ=255) ggATTCCAGCCAATATTCTGGATATCCGGACTATAGTGATTCAAGCAATATCCGTATGTCTGCGGGTATCGCATTACAATGGATGTCCCCATTGGGGCCGTTGGTGTTCTCCTCCGCCCAGCCGTTCAAAAAGTACGAt > 2:1291009/1‑139 (MQ=255) ccAGCCAATATTCTGGATATCCGGACTATAGTGATTCAAGCAATATCCGTATGTCTGCGGGTATCGCATTACAATGGATGTCCCCATTGGGGCCGTTGGTGTTCTCCTACGCCCAGCCGTTCAAAAAGTACGATGgaga < 2:230318/139‑1 (MQ=255) cAATATTCTGGATATCCGGACTATAGTGATTCAAGCAATATCCGTATGTCTGCGGGTATCGCATTACAATGGATGTCCCCATTGGGGCCGTTGGTGTTCTCCTACGCCCAGCCGTTCAAAAAGTACGATGGAGACAAgg < 1:608026/139‑1 (MQ=255) aaTATTCTGGATATCCGGACTATAGTGATTCAAGCAATATCCGTATGTCTGCGGGTATCGCATTACAATGGATGTCCCCATTGGGGCCGTTGGTGTTCTCCTACGCCCAGCCGTTCAAAAAGTACGATGGAGACAAGGc > 2:376415/1‑139 (MQ=255) tatTCTGGATATCCGGACTATAGTGATTCAAGCAATATCCGTATGTCTGCGGGTATCGCATTACAATGGATGTCCCCATTGGGGCCGTTGGTGTTCTCCTACGCCCAGCCGTTCAAAAAGTACGATGGAGACAAGGCAg > 1:950703/1‑139 (MQ=255) tCTGGATATCCGGACTATAGTGATTCAAGCAATATCCGTATGTCTGCGGGTATCGCATTACAATGGATGTCCCCATTGGGGCCGTTGGTGTTCTCCTACGCCCAGCCGTTCAAAAAGTACGATGGAGACAAGGCAGAAc > 1:964591/1‑139 (MQ=255) atCCGGACTATAGTGATTCAAGCAATATCCGTATGTCTGCGGGTATCGc > 1:1241586/1‑49 (MQ=255) atCCGGACTATAGTGATTCAAGCAATATCCGTATGTCTGCGGGTATCGc < 2:1241586/49‑1 (MQ=255) ccGGACTATAGTGATTCAAGCAATATCCGTATGTCTGCGGGTATCGCATTACAATGGATGTCCCCATTGGGGc < 2:619381/73‑1 (MQ=255) ccGGACTATAGTGATTCAAGCAATATCCGTATGTCTGCGGGTATCGCATTACAATGGATGTCCCCATTGGGGc > 1:619381/1‑73 (MQ=255) ccGGACTATAGTGATTCAAGCAATATCCGTATGTCTGCGGGTATCGCATTACAATGGATGTCCCCATTGGGGCCGTTGgtgt < 2:537889/82‑1 (MQ=255) ccGGACTATAGTGATTCAAGCAATATCCGTATGTCTGCGGGTATCGCATTACAATGGATGTCCCCATTGGGGCCGTTGgtgt > 1:537889/1‑82 (MQ=255) ccGGACTATAGTGATTCAAGCAATATCCGTATGTCTGCGGGTATCGCATTACAATGGATGTCCCCATTGGGGCCGTTGGTGTTCTCCTACGCCCAGCCGTTCAAAAAGTACGATGGAGACAAGGCAGAACAGTTCCAGt > 2:444271/1‑139 (MQ=255) cTATAGTGATTCAAGCAATATCCGTATGTCTGCGGGTATCGCATTACAATGGATGTCCCCATTGGGGCCGTTGGTGTTCTCCTACGCCCAGCCGTTCAAAAAGTACGATGGAGACAAGGCAGAACAGTTCCAGTTTAAc > 2:891648/1‑139 (MQ=255) aGTGATTCAAGCAATATCCGTATGTCTGCGGGTATCGCATTACAATGGATGTCCTCATTGGGGCCGTTGGTGTTCTCATACGCCCAGCCGTTCAAAAAGTACGATGGAGACAAGGCAGAACAGTTCCAGTTAAACATCg > 2:955273/1‑139 (MQ=255) tGATTCAAGCAATATCCGTATGTCTGCGGGTATCGCATTACAATGGATGTCCCCATTGGGGCCGTTGGTGTTCTCCTACGCCCAGCCGTTCAAAAAGTACGATGGAGACAAGGCAGAACAGTTCCAGTTTAACATCGGt < 1:460285/139‑1 (MQ=255) tGATTCAAGCAATATCCGTATGTCTGCGGGTATCGCATTACAATGGATGTCCCCATTGGGGCCGTTGGTGTTCTCCTACGCCCAGCCGTTCAAAAAGTACGATGGAGACAAGGCAGAACAGTTCCAGTTTAACATCGGt < 2:964591/139‑1 (MQ=255) | GTTCATCACCCCGACGCCGTTTATTAGCGATAAGTATGCTAACTCGGTTCGTACTTCCTTCTTCTGGGATAT‑GGGTACCGTTTGGGATACAAACTGGGATTCCAGCCAATATTCTGGATATCCGGACTATAGTGATCCAAGCAATATCCGTATGTCTGCGGGTATCGCATTACAATGGATGTCCCCATTGGGGCCGTTGGTGTTCTCCTACGCCCAGCCGTTCAAAAAGTACGATGGAGACAAGGCAGAACAGTTCCAGTTTAACATCGGT > NC_000913/200078‑200348 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |