| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 4,507,463 | G→A | intergenic (+12/+3) | insO → / ← insI1 | pseudogene, IS911 transposase B,IS, phage, Tn, Transposon‑related functions, extrachromosomal, transposon related/IS30 transposase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,507,463 | 0 | G | A | 100.0% | 176.9 / NA | 57 | intergenic (+12/+3) | insO/insI1 | pseudogene, IS911 transposase B,IS, phage, Tn, Transposon‑related functions, extrachromosomal, transposon related/IS30 transposase |
| Reads supporting (aligned to +/- strand): ref base G (0/0); new base A (27/30); total (27/30) | |||||||||||
CTGCGTGATGAGCGTCAGGGCAAAACACCAAAAGCCTCTCCGATAACACCAGAACAAATCGAAATACGTAAGCTGAGGAAAAAGCTACAACGGATTGAAATGGAGAATGAAATATTAAAAAGGCTACTGTAGATTCAATC‑TGTCAATGCAACACCCCTTTCAATTATCTCTTTCGGTGTTTTGAACTTCAGTGTCTTTCTCGGTCTGTTGTTTAGCTGAGCAGCAACCAGATCTAGTTCATGTTGAGTATATTGGGC > NC_000913/4507332‑4507588 | cTGCGTGATGAGCGTCAGGGCAAAACACCAAAAGCCTCTCCGATAACACCAGAACAAATCGAAATACGTAAGCTGAGGAAAAAGCTACAACGGATTGGAATGGAGAATGAAATATTAAAAAGGCTACTGTAAATTCAAt < 2:810162/139‑1 (MQ=255)cTGCGTGATGAGCGTCAGGGCAAAACACCAAAAGCCTCTCCGATAACACCAGAACAAATCGAAATACGTAAGCTGAGGAAAAAGCTACAACGGATTGAAATGGAGAATGAAATATTAAAAAGGCTACTGTAAATTCAAt < 2:746554/139‑1 (MQ=255) gCGTGATGAGCGTCAGGGCAAAACACCAAAAGCCTCTCCGATAACACCAGAACAAATCGAAATACGTAAGCTGAGGAAACAGCTACAACGGATTGAAATGGAGAATGAAATATTAAAAAGGCTACTGTAAGTTCAATC‑t > 2:798095/1‑139 (MQ=255) gCGTGATGAGCGTCAGGGCAAAACACCAAAAGCCTCTCCGATAACACCAGAACAAATCGAAATACGTAAGCTGAGGAAAAAGCTACAACGGATTGAAATGGAGAATGAAATATTAAAAAGGCTACTGTAAATTCaa < 1:1099525/136‑1 (MQ=255) gCGTGATGAGCGTCAGGGCAAAACACCAAAAGCCTCTCCGATAACACCAGAACAAATCGAAATACGTAAGCTGAGGAAAAAGCTACAACGGATTGAAATGGAGAATGAAATATTAAAAAGGCTACTGTAAATTCaa > 2:1099525/1‑136 (MQ=255) gCGTGATGAGCGTCAGGGCAAAACACCAAAAGCCTCTCCGATAACACCAGAACAAATCGAAATACGTAAGCTGAGGAAAAAGCTACAACGGATTGAAATGGAGAATGAAATATTAAAAAGGCTACTGTAAATTCAATC‑t > 1:699811/1‑139 (MQ=255) gTGATGAGCGTCAGGGCAAAACACCAAAAGCCTCTCCGATAACACCAGAACAAATCGAAATACGTAAGCTGAGGAAAAAGCTACAACGGATTGAAATGGAGAATGAAATATTAAAAAGGCTACTGTAAATTCAATC‑TGt < 2:807840/139‑1 (MQ=255) tgaGCGTCAGGGCAAAACACCAAAAGCCTCTCCGATAACACCAGAACAAATCGAAATACGTAAGCTGAGGAAAAAGCTACAACGGATTGAAATGGAGAATGAAATATTAAAAAGGCTACTGTAAATTCAATC‑TGTCAAt > 1:1203565/1‑139 (MQ=255) tgaGCGTCAGGGCAAAACACCAAAAGCCTCTCCGATAACACCAGAACAAATCGAAATACGTAAGCTGAGGAAAAAGCTACAACGGATTGAAATGGAGAATGAAATATTAAAAAGGCTACTGTAAATTCAATC‑TGTCAAt > 1:1234951/1‑139 (MQ=255) cGTCAGGGCAAAACACCAAAAGCCTCTCCGATAACACCAGAACAAATCGAAATACGTAAGCTGAGGAAAAAGCTACAACGGATTGAAATGGAGAATGAAATATTAAAAAGGCTACTGTAAATTCAAt < 2:873622/127‑1 (MQ=255) cGTCAGGGCAAAACACCAAAAGCCTCTCCGATAACACCAGAACAAATCGAAATACGTAAGCTGAGGAAAAAGCTACAACGGATTGAAATGGAGAATGAAATATTAAAAAGGCTACTGTAAATTCAAt > 1:873622/1‑127 (MQ=255) gTCAGGGCAAAACACCAAAAGCCTCTCCGATAACACCAGAACAAATCGAAATACGTAAGCTGAGGAAAAAGCTACAACGGATTGAAATGGAGAATGAAATATTAAAAAGGCTACTGTAAATTCAAt > 2:324525/1‑126 (MQ=255) gTCAGGGCAAAACACCAAAAGCCTCTCCGATAACACCAGAACAAATCGAAATACGTAAGCTGAGGAAAAAGCTACAACGGATTGAAATGGAGAATGAAATATTAAAAAGGCTACTGTAAATTCAAt < 1:324525/126‑1 (MQ=255) tCAGGGCAAAACACCAAAAGCCTCTCCGATAACACCAGAACAAATCGAAATACGTAAGCTGAGGAAAAAGCTACAACGGATTGAAATGGAGAATGAAATATTAAAAAGGCTACTGTAAATTCAATC‑TGTCAATGCAaca < 2:1203565/139‑1 (MQ=255) ggCAAAACACCAAAAGCCTCTCCGATAACACCAGAACAAATCGAAATACGTAAGCTGAGGAAAAAGCTACAACGGATTGAAATGGAGAATGAAATATTAAAAAGGCTACTGTAAATTCAATC‑TGTCAATGCAACAcccc < 1:504019/139‑1 (MQ=255) tcCGATAACACCAGAACAAATCGAAATACGTAAGCTGAGGAAAAAGCTACAACGGATTGAAATGGAGAATGAAATATTAAAAAGGCTACTGTAAATTCAATCTTGTCAATGCAACACCCCTTTCAATTATCTCTTTCgg > 2:152049/1‑139 (MQ=255) gAACAAATCGAAATACGTAAGCTGAGGAAAAAGCTACAACGGATTGAAATGGAGAATGAAATATTAAAAAGGCTACTGTAAATTCAATC‑TGTCAATGCAACACCCCTTTCAATTATCTCTTTCGGTGTTTTGAACTTCa < 1:583580/139‑1 (MQ=255) aaCAAATCGAAATACGTAAGCTGAGGAAAAAGCTACAACGGATTGAAATGGAGAATGAAATATTAAAAAGGCTACTGTAAATTCAATC‑TGTCAATGCAACACCCCTTTCAATTATCTCTTTCGGTGTTTTGAACTTCAg > 1:210361/1‑139 (MQ=255) aCAAATCGAAATACGTAAGCTGAGGAAAAAGCTACAACGGATTGAAATGGAGAATGAAATATTAAAAAGGCTACTGTAAATTCAATC‑TGTCAATGCAACACCCCTTTCAATTATCTCTTTCGGTGTTTTGAACTTCAgt < 2:210361/139‑1 (MQ=255) aCAAATCGAAATACGTAAGCTGAGGAAAAAGCTACAACGGATTGAAATGGAGAATGAAATATTAAAAAGGCTACTGTAAATTCAATC‑TGTCAATGCAACACCCCTTTCAATTATCTCTTTCGGTGTTTTGAACTTCAgt > 2:470044/1‑139 (MQ=255) aTCGAAATACGTAAGCTGAGGAAAAAGCTACAACGGATTGAAATGGAGAATGAAATATTAAAAAGGCTACTGTAAATTCAAt > 1:552586/1‑82 (MQ=255) aTCGAAATACGTAAGCTGAGGAAAAAGCTACAACGGATTGAAATGGAGAATGAAATATTAAAAAGGCTACTGTAAATTCAAt < 2:552586/82‑1 (MQ=255) aTCGAAATACGTAAGCTGAGGAAAAAGCTACAACGGATTGAAATGGAGAATGAAATATTAAAAAGGCTACTGTAAATTCAATC‑TGTCAATGCAACACCCCTTTCAATTATCTCTTTCGGTGTTTTGAACTTCAGTGTCt > 2:1154821/1‑139 (MQ=255) aTCGAAATACGTAAGCTGAGGAAAAAGCTACAACGGATTGAAATGGAGAATGAAATATTAAAAAGGCTACTGTAAATTCAATC‑TGTCAATGCAACACCCCTTTCAATTA‑‑TCTTTCGGTGTTTTGAACTTCAGTGTCttt > 2:470732/1‑139 (MQ=255) cGTAAGCTGAGGAAAAAGCTACAACGGATTGAAATGGAGAATGAAATATTAAAAAGGCTACTGTAAATTCAATC‑TGTCAATGCAACACCCCTTTCAATTATCTCTTTCGGTGTTTTGAACTTCAGTGTCTTTCTCGGTc < 1:440767/139‑1 (MQ=255) cTGAGGAAAAAGCTACAACGGATTGAAATGGAGAATGAAATATTAAAAAGGCTACTGTAAATTCAATC‑TGTCAATGCAACACCCCt > 2:457947/1‑86 (MQ=255) cTGAGGAAAAAGCTACAACGGATTGAAATGGAGAATGAAATATTAAAAAGGCTACTGTAAATTCAATC‑TGTCAATGCAACACCCCt > 2:48038/1‑86 (MQ=255) cTGAGGAAAAAGCTACAACGGATTGAAATGGAGAATGAAATATTAAAAAGGCTACTGTAAATTCAATC‑TGTCAATGCAACACCCCt < 1:48038/86‑1 (MQ=255) cTGAGGAAAAAGCTACAACGGATTGAAATGGAGAATGAAATATTAAAAAGGCTACTGTAAATTCAATC‑TGTCAATGCAACACCCCt < 1:457947/86‑1 (MQ=255) aGGAAAAAGCTACAACGGATTGAAATGGAGAATGAAATATTAAAAAGGCTACTGTAAATTCAATC‑TGTCAATGCAACACCCCTTTCAATTATCTCTTTCGGTGTTTTGAACTTCAGTGTCTTTCTCGGTCTGTTGTTTa > 2:519792/1‑139 (MQ=255) aGGAAAAAGCTACAACGGATTGAAATGGAGAATGAAATATTAAAAAGGCTACTGTAAATTCAATC‑TGTCAATGCAACACCCCTTTCAATTATCTCTTTCGGTGTTTTGAACTTCAGTGTCTTTCTCGGTCTGTTGTTTa > 2:1296489/1‑139 (MQ=255) gAAAAAGCTACAACGGATTGAAATGGAGAATGAAATATTAAAAAGGCTACTGTAAATTCAATC‑TGTCAATGCAACACCCCTTTCAATTA‑‑TCTTTCGGTGTTTTGAACTTCAGTGTCTTTCTCGGTCTGTTGTTTAGCTg < 1:470732/139‑1 (MQ=255) aCAACGGATTGAAATGGAGAATGAAATATTAAAAAGGCTACTGTAAATTCAATC‑TGTCAATGCAACACCCCTTTCAATTATCTCTTTCGGTGTTTTGAACTTCAGTGTCTTTCTCGGTCTGTTGTTTAGCTGAgcagca < 2:751363/139‑1 (MQ=255) aTTGAAATGGAGAATGAAATATTAAAAAGGCTACTGTAAATTCAATC‑TGTCAATGCAACACCCCTTTCAATTATCTCTTTCGGTGTTTTGAACTTCAGTGTCTTTCTCGGTCTGTTGTTTAg < 2:927843/122‑1 (MQ=255) aTTGAAATGGAGAATGAAATATTAAAAAGGCTACTGTAAATTCAATC‑TGTCAATGCAACACCCCTTTCAATTATCTCTTTCGGTGTTTTGAACTTCAGTGTCTTTCTCGGTCTGTTGTTTAg > 1:927843/1‑122 (MQ=255) aTTGAAATGGAGAATGAAATATTAAAAAGGCTACTGTAAATTCAATC‑TGTCAATGCAACACCCCTTTCAATTATCTCTTTCGGTGTTTTGAACTTCAGTGTCTTTCTCGGTCTGTTGTTTAGCTGAGCAGCAACCAGAt > 1:1000071/1‑139 (MQ=255) aTTGAAATGGAGAATGAAATATTAAAAAGGCTACTGTAAATTCAATC‑TGTCAATGCAACACCCCTTTCAATTATCTCTTTCGGTGTTTTGAACTTCAGTGTCTTTCTCGGTCTGTTGTTTAGCTGAGCAGCAACCAGAt < 2:1000071/139‑1 (MQ=255) aTTGAAATGGAGAATGAAATATTAAAAAGGCTACTGTAAATTCAATC‑TGTCAATGCAACACCCCTTTCAATTATCTCTTTCGGTGTTTTGAACTTCAGTGTCTTTCTCGGTCTGTTGTTTAGCTGAGCAGCAACCAGAt > 2:497067/1‑139 (MQ=255) tGGAGAATGAAATATTAAAAAGGCTACTGTAAATTCAATC‑TGTCAATGCAACACCCCTTTCAATTATCTCTTTCGGTGTTTTGAACTTCAGTGTCTTTCTCGGTCTGTTGTTTAGCTGAGCAGCAACCAGATCTAGTTc < 1:1296489/139‑1 (MQ=255) tGGAGAATGAAATATTAAAAAGGCTACTGTAAATTCAATC‑TGTCAATGCAACACCCCTTTCAATTATCTCTTTCGGTGTTTTGAACTTCAGTGTCTTTCTCGGTCTGTTGTTTAGCTGAGCAGCAACCAGATCTAGTTc < 1:797115/139‑1 (MQ=255) gagaATGAAATATTAAAAAGGCTACTGTAAATTCAATC‑TGTCAATGCAACACCCCTTTCAATTATCTCTTTCGGTGTTTTGAACTTCAgt > 2:245076/1‑90 (MQ=255) gagaATGAAATATTAAAAAGGCTACTGTAAATTCAATC‑TGTCAATGCAACACCCCTTTCAATTATCTCTTTCGGTGTTTTGAACTTCAgt < 1:245076/90‑1 (MQ=255) gagaATGAAATATTAAAAAGGCTACTGTAAATTCAATC‑TGTCAATGCAACACCCCTTTCAATTATCTCTTTCGGTGTTTTGAACTTCAGTGTCTTTCTCGGTc < 2:1300310/103‑1 (MQ=255) gagaATGAAATATTAAAAAGGCTACTGTAAATTCAATC‑TGTCAATGCAACACCCCTTTCAATTATCTCTTTCGGTGTTTTGAACTTCAGTGTCTTTCTCGGTc > 1:1300310/1‑103 (MQ=255) agaATGAAATATTAAAAAGGCTACTGTAAATTCAATCTTGTCAATGCAACACCCCTTTCAATTATCTCTTTCGGTGTTTTGAACTTCAGTGTCTTTCTCGGTCTGTTGTTTAGCTGAGCAGCAACCAGATCTAGTTCAt < 1:152049/139‑1 (MQ=255) aaTGAAATATTAAAAAGGCTACTGTAAATTCAATC‑TGTCAATGCAACACCCCTTTCAATTATCTCTTTCGGTGTTTTGAACTTCAGTGTCTTTCTCGGTCTGTTGTTTAGCTGAGCAGCAACCAGATCTAGTTCATGtt < 1:519792/139‑1 (MQ=255) aaTGAAATATTAAAAAGGCTACTGTAAATTCAATC‑TGTCAATGCAACACCCCTTTCAATTATCTCTTTCGGTGTTTTGAACTTCAGTGTCTTTCTCGGTCTGTTGTTTAGCTGAGCAGCAACCAGATCTAGTTCATGtt < 2:699811/139‑1 (MQ=255) tGAAATATTAAAAAGGCTACTGTAAATTCAATC‑TGTCAATGCAACACCCCTTTCAATTATCTCTTTCGGTGTTTTGAACTTCAGTGTCTTTCTCGGTCTGTTGTTTAGCTGAGCAGCAACCAGATCTAGTTCATGTTGa > 1:14274/1‑139 (MQ=255) tatTAAAAAGGCTACTGTAAATTCAATC‑TGTCAATGCAACACCCCTTTCAATTATCTCTTTCGGTGCTTTGAACTTCAGTGTCTTTCTCGGTCTGTTGTTTAGCTGAGCAGCAACCAGATCTAGCTCATGTTGAGtata < 1:798095/139‑1 (MQ=255) ttAAAAAGGCTACTGTAAATTCAATC‑TGTCAATGCAACACCCCTTTCAATTATCTCTTTCGGTGTTTTGAACTTCAGTGTCTTTCTCGGTCTGTTGTTTAGCTGAGCAGCAACCAGATCTAGTTCATGTTGAGTATAtt > 1:908126/1‑139 (MQ=37) tAAAAAGGCTACAGTAAATTCAATC‑TGTCAATGCAACACCCCTTTCAATTATCTCTTTAGGTGTTTTGAACTTCAGTGTTTTTCTCGGTCTGTTGTTTAGCTGAGCAGCAACAAGATCTAGTTCATGTTGAGTATATTg > 2:1197839/1‑139 (MQ=11) aaaaGGCTACTGTAAATTCAATC‑TGTCAATGCAACACCCCTTTCAATTATCTCTTTCGGTGTTTTGAACTTCAGTGTCTTTCTCGGTCTGTTGTTTAGCTGAGCAGCAACCAGATCTAGTTCATGTTGAGTATATTggg < 1:497067/139‑1 (MQ=21) aaaaGGCTACTGTAAATTCAATC‑TGTCAATGCAACACCCCTTTCAATTATCTCTTTCGGTGTTTTGAACTTCAGTGTCTTTCTCGGTCTGTTGTTTAGCTGAGCAGCAACCAGATCTAGTTCATGTTGAGTATATTggg < 2:413764/139‑1 (MQ=21) cTACTGTAAATTCTATC‑TGTCAATGCAACACCCCTTTCAATTATCTCTTTCGGTGTTTTGAACTTCAGTGTCTTTCTCGGTCTGTTGTTTAGCTGAGCAGCAACCAGATCTAGTTCATGTTGAGTATATTGGGc < 2:1194631/134‑1 (MQ=17) cTACTGTAAATTCTATC‑TGTCAATGCAACACCCCTTTCAATTATCTCTTTCGGTGTTTTGAACTTCAGTGTCTTTCTCGGTCTGTTGTTTAGCTGAGCAGCAACCAGATCTAGTTCATGTTGAGTATATTGGGc > 1:1194631/1‑134 (MQ=17) cTACTGTAAATTCAATC‑TGTCAATGCAACACCCCTTTCAATTATCTCTTTCGGTGTTTTGAACTTCAGTGTCTTTCTCGGTCTGTTGTTTAGCTGAGCAGCAACCAGAt > 1:285506/1‑109 (MQ=17) cTACTGTAAATTCAATC‑TGTCAATGCAACACCCCTTTCAATTATCTCTTTCGGTGTTTTGAACTTCAGTGTCTTTCTCGGTCTGTTGTTTAGCTGAGCAGCAACCAGAt < 2:285506/109‑1 (MQ=17) | CTGCGTGATGAGCGTCAGGGCAAAACACCAAAAGCCTCTCCGATAACACCAGAACAAATCGAAATACGTAAGCTGAGGAAAAAGCTACAACGGATTGAAATGGAGAATGAAATATTAAAAAGGCTACTGTAGATTCAATC‑TGTCAATGCAACACCCCTTTCAATTATCTCTTTCGGTGTTTTGAACTTCAGTGTCTTTCTCGGTCTGTTGTTTAGCTGAGCAGCAACCAGATCTAGTTCATGTTGAGTATATTGGGC > NC_000913/4507332‑4507588 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |