| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 454,434 | G→A | intergenic (‑267/‑38) | yajG ← / → bolA | putative lipoprotein/stationary‑phase morphogene, transcriptional repressor for mreB, also regulator for dacA, dacC, and ampC |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 454,434 | 0 | G | A | 100.0% | 174.6 / NA | 54 | intergenic (‑267/‑38) | yajG/bolA | putative lipoprotein/stationary‑phase morphogene, transcriptional repressor for mreB, also regulator for dacA, dacC, and ampC |
| Reads supporting (aligned to +/- strand): ref base G (0/0); new base A (24/30); total (24/30) | |||||||||||
CTGATGCGAGGCCTGTGTTTCAATCTTTAAATCAGTAAACTTCATACGCTTGACGGAAAAACCAGGACGAAACCTAAATATTTGTTGTTAAGCTGCAATGGAAACGGTAAAAGCGGCTAGTATTTAAAGGGATGGATGACATCTCAGCGTTGTCGGAGGAGATATTTCATGATGATACGTGAGCGGATAGAAGAAAAATTAAGGGCGGCGTTCCAACCCGTATTCCTCGAAGTAGTGGATGAAAGCTATCGTCACA > NC_000913/454304‑454559 | cagATGCGAGGCCTGTGTTTCAATCTTTAAATCAGTAAACTTCATACGCTTGACGGAAAAACCAGGACGAAACCTAAATATTTGTTGTTAAGCTGCAATGGAAACGGTAAAAGCGGCTTGTATTTAAAGGAATGGATGa < 2:771900/137‑1 (MQ=255)cTGATGCGAGGCCTGTGTTTCAATCTTTAAATCAGTAAACTTCATACGCTTGACGGAAAAACCAGGACGAAACCTAAATATTTGTTGTTAAGCTGCAATGGAAACGGTAAAAGCGGCTAGTATTTAAAGGAATGGATGa < 1:1101616/139‑1 (MQ=255)cTGATGCGAGGCCTGTGTTTCAATCTTTAAATCAGTAAACTTCATACGCTTGACGGAAAAACCAGGACGAAACCTAAATATTTGTTGTTAAGCTGCAATGGAAACGGTAAAAGCGGCTAGTATTGAAAGGAATGGATGa < 1:324108/139‑1 (MQ=255) aTGCGAGGCCTGTGTTTCAATCTTTAAATCAGTAAACTTCATACGCTTGACGGAAAAACCAGGACGAAACCTAAATATTTGTTGTTAAGCTGCAATGGAAACGGTAAAAGCGGCTAGTATTTAAAGGAATGGATGACAt > 2:354994/1‑139 (MQ=255) ggCCTGTGTTTCAATCTTTAAATCAGTAAACTTCATACGCTTGACGGAAAAACCAGGACGAAACCTAAATATTTGTTGTTAAGCTGCAATGGAAACGGTAAAAGCGGCTAGTATTTAAAGGAATGGATGACATCTCAGc < 2:715128/139‑1 (MQ=255) tgtgTTTCAATCTTTAAATCAGTAAACTTCATACGCTTGACGGAAAAACCAGGACGAAACCTAAATATTTGTTGTTAAGCTGCAATGGAAACGGTAAAAGCGGCTAGTATTTAAAGGAATGGATGACATCTCAGCGTTg > 1:1034327/1‑139 (MQ=255) tgtgTTTCAATCTTTAAATCAGTAAACTTCATACGCTTGACGGAAAAACCAGGACGAAACCTAAATATTTGTTGTTAAGCTGCAATGGAAACGGTAAAAGCGGCTAGTATTTAAAGGAATGGATGACATCTCAGCGTTg < 1:760758/139‑1 (MQ=255) gtgtTTCAATCTTTAAATCAGTAAACTTCATACGCTTGACGGAAAAACCAGGACGAAACCTAAATATTTGTTGTTAAGCTGCAATGGAAACGGTAAAAGCGGCTAGTATTTAAAGGAATGGATGACATCTCAGCGTTGt < 2:359119/139‑1 (MQ=255) ttCAATCTTTAAATCAGTAAACTTCATACGCTTGACGGAAAAACCAGGACGAAACCTAAATATTTGTTGTTAAGCTGCAATGGAAACGGTAAAAGCGGCTAGTATTTAAAGGAATGGATGACATCTCAGCGTTGTCgga < 2:1034327/139‑1 (MQ=255) tCAATCTTTAAATCAGTAAACTTCATACGCTTGACGGAAAAACCAGGACGAAACCTAAATATTTGTTGTTAAGCTGCAATGGAAACGGTAAAAGCGGCTAGTATTTAAAGGAATGGATGACATCTCAGCGTTGTCggag < 1:1071615/139‑1 (MQ=255) tCAATCTTTAAATCAGTAAACTTCATACGCTTGACGGAAAAACCAGGACGAAACCTAAATATTTGTTGTTAAGCTGCAATGGAAACGGTAAAAGCGGCTAGTATTTAAAGGAATGGATGACATCTCAGCGTTGTCggag < 1:433969/139‑1 (MQ=255) tttAAATCAGTAAACTTCATACGCTTGACGGAAAAACCAGGACGAAACCTAAATATTTGTTGTTAAGCTGCAATGGAAACGGTAAAAGCGGCTAGTATTTAAAGGAATGGATGACATCTCAGCGTTGTCGGAGGAGata < 2:305637/139‑1 (MQ=255) tttAAATCAGTAAACTTCATACGCTTGACGGAAAAACCAGGACGAAACCTAAATATTTGTTGTTAAGCTGCAATGGAAACGGTAAAAGCGGCTAGTATTTAAAGGAATGGATGACATCTCAGCGTTGTCGGAGGAGata > 2:923391/1‑139 (MQ=255) tttAAATCAGTAAACTTCATACGCTTGACGGAAAAACCAGGACGAAACCTAAATATTTGTTGTTAAGCTGCAATGGAAACGGTAAAAGCGGCTAGTATTTAAAGGAATGGATGACATCTCAGCGTTGTCGGAGGAGata > 1:684360/1‑139 (MQ=255) aaTCAGTAAACTTCATACGCTTGACGGAAAAACCAGGACGAAACCTAAATATTTGTTGTTAAGCTGCAATGGAAACGGTAAAAGCGGCTAGTATTTAAAGGAATGGATGACATCTCAGCGTTGTCGGAGGAGATATTTc < 2:256834/139‑1 (MQ=255) tCATACGCTTGACGGAAAAACCAGGACGAAACCTAAATATTTGTTGTTAAGCTGCAATGGAAACGGTAAAAGCGGCTAGTATTTAAAGGAATGGATGACATCTCAGCGTTGTCGGAGGAGATATTTCATGATGATACGt < 1:904545/139‑1 (MQ=255) cATACGCTTGACGGAAAAACCAGGACGAAACCTAAATATTTGTTGTTAAGCTGCAATGGAAACGGTAAAAGCGGCTAGTATTTAAAGGAATGGATGACATCTCAGCGTTGTCGgaggag < 2:475090/119‑1 (MQ=255) cATACGCTTGACGGAAAAACCAGGACGAAACCTAAATATTTGTTGTTAAGCTGCAATGGAAACGGTAAAAGCGGCTAGTATTTAAAGGAATGGATGACATCTCAGCGTTGTCGgaggag > 1:475090/1‑119 (MQ=255) aCGCTTGACGGAAAAACCAGGACGAAACCTAAATATTTGTTGTTAAGCTGCAATGGAAACGGTAAAAGCGGCTAGTATTTAAAGGAATGGATGACATCTCAGCGTTGTCGGAGGAGATATTTCATGATGATACGTGAGc > 2:395156/1‑139 (MQ=255) ttGACGGAAAAACCAGGACGAAACCTAAATATTTGTTGTTAAGCTGCAATGGAAACGGTAAAAGCGGCTAGTATTTAAAGGAATGGATGACATCTCAGCGTTGTCGGAGGAGATATTTCATGATGATACGTGAGCGGAt > 2:727418/1‑139 (MQ=255) tGACGGAAAAACCAGGACGAAACCTAAATATTTGTTGTTAAGCTGCAATGGAAACGGTAAAAGCGGCTAGTATTTAAAGGAATGGATGACATCTCAGCGTTATCGGAGGAGATATTTCATGATGATACGTGAGCGGATa > 1:1211652/1‑139 (MQ=255) aCGGAAAAACCAGGACGAAACCTAAATATTTGTTGTTAAGCTGCAATGGAAACGGTAAAAGCGGCTAGTATTTAAAGGAATGGATGACATCTCAGCGTTGTCGGAGGAGATATTTCATGATGATACGTGAGCGGATaga > 2:439744/1‑139 (MQ=255) cAGGACGAAACCTAAATATTTGTTGTTAAGCTGCAATGGAAACGGTAAAAGCGGCTAGTATTTAAAGGAATGGATGACATCTCAGCGTTGTCGGAGGAGATATTTc > 1:1219034/1‑106 (MQ=255) cAGGACGAAACCTAAATATTTGTTGTTAAGCTGCAATGGAAACGGTAAAAGCGGCTAGTATTTAAAGGAATGGATGACATCTCAGCGTTGTCGGAGGAGATATTTc < 2:1219034/106‑1 (MQ=255) ggACGAAACCTAAATATTTGTTGTTAAGCTGCAATGGAAACGGTAAAAGCGGCTAGTATTTAAAGGAATGGATGACATCTCa > 2:532722/1‑82 (MQ=255) ggACGAAACCTAAATATTTGTTGTTAAGCTGCAATGGAAACGGTAAAAGCGGCTAGTATTTAAAGGAATGGATGACATCTCa < 1:532722/82‑1 (MQ=255) ggACGAAACCTAAATATTTGTTGTTAAGCTGCAATGGAAACGGTAAAAGCGGCTAGTATTTAAAGGAATGGATGACATCTCAGCGTTGTCGGAGGAGATATTTCATGATGATACGTGAGCGGATagaaga > 2:741603/1‑130 (MQ=255) ggACGAAACCTAAATATTTGTTGTTAAGCTGCAATGGAAACGGTAAAAGCGGCTAGTATTTAAAGGAATGGATGACATCTCAGCGTTGTCGGAGGAGATATTTCATGATGATACGTGAGCGGATagaaga < 1:741603/130‑1 (MQ=255) gACGAAACCTAAATATTTGTTGTTAAGCTGCAATGGAAACGGTAAAAGCGGCTAGTATTTAAAGGAATGGATGACAtctc < 2:74630/80‑1 (MQ=255) gACGAAACCTAAATATTTGTTGTTAAGCTGCAATGGAAACGGTAAAAGCGGCTAGTATTTAAAGGAATGGATGACAtctc > 1:74630/1‑80 (MQ=255) aCGAAACCTAAATATTTGTTGTTAAGCTGCAATGGAAACGGTAAAAGCGGCTAGTATTTAAAGGAATGGATGACATCTCAGCGTTGTCGGAGGAGATATTTCATGATGATACGTGAGCGGATAGAAGAAAAATTAAggg > 2:561130/1‑139 (MQ=255) aaaCCTAAATATTTGTTGTTAAGCTGCAATGGAAACGGTAAAAGCGGCTAGTATTTAAAGGAATGGATGACATCTCAGCGTTGTCGGAGGAGATATTTCATGATGATACGTGAGCGGATAGAAGAAAAATTAAGggcgg > 1:47534/1‑139 (MQ=255) cTAAATATTTGTTGTTAAGCTGCAATGGAAACGGTAAAAGCGGCTAGTATTTAAAGGAATGGATGACATCTCAGCGTTGTCGGAGGAGATATTTCATGATGATACGTGAGCGGATAGAAGAAAAATTAAGGGCGGCGtt < 2:684360/139‑1 (MQ=255) aaaTATTTGTTGTTAAGCTGCAATGGAAACGGTAAAAGCGGCTAGTATTTAAAGGAATGGATGACATCTCAGCGTTGTCGGAGGAGATATTTCATGATGATACGTGAGCGGATAGAAGAAAAATTAAGGGCGGCGTTcc < 1:354994/139‑1 (MQ=255) tgttgtTAAGCTGCAATGGAAACGGTAAAAGCGGCTAGTATTTAAAGGAATGGATGACATCTCAGCGTTg > 2:627308/1‑70 (MQ=255) tgttgtTAAGCTGCAATGGAAACGGTAAAAGCGGCTAGTATTTAAAGGAATGGATGACATCTCAGCGTTg < 1:627308/70‑1 (MQ=255) aaGCTGCAATGGAAACGGTAAAAGCGGCTAGTATTTAAAGGAATGGATGACATCTCAGCGTTGACGGAGGAGATATTTCATGATGATACGTGAGCGGATAGAAGAAAAATTAAGGGCGGCGTTCCAACCCGTATTCCTc > 2:385299/1‑139 (MQ=255) aGCTGCAATGGAAACGGTAAAAGCGGCTAGTATTTAAAGGAATGGATGACATCTCAGCGTTGTCGGAGGAGATATTTCATGATGATACGTGAGCGGATAGAAGAAAAATTAAGGGCGGCGTTCCAACCCGTATTCCTCg < 1:561130/139‑1 (MQ=255) cAATGGAAACGGTAAAAGCGGCTAGTATTTAAAGGAATGGATGACATCTCAGCGTTGTCGGAGGAGATATTTCATGATGATACGTGAGCGGAt < 2:418888/93‑1 (MQ=255) cAATGGAAACGGTAAAAGCGGCTAGTATTTAAAGGAATGGATGACATCTCAGCGTTGTCGGAGGAGATATTTCATGATGATACGTGAGCGGAt > 1:418888/1‑93 (MQ=255) cAATGGAAACGGTAAAAGCGGCTAGTATTTAAAGGAATGGATGACATCTCAGCGTTGTCGGAGGAGATATTTCATGATGATACGTGAGCGGATAGAAGAAAAAt < 1:227929/104‑1 (MQ=255) cAATGGAAACGGTAAAAGCGGCTAGTATTTAAAGGAATGGATGACATCTCAGCGTTGTCGGAGGAGATATTTCATGATGATACGTGAGCGGATAGAAGAAAAAt > 2:227929/1‑104 (MQ=255) aaTGGAAACGGTAAAAGCGGCTAGTATTTAAAGGAATGGATGACATCTCAGCGTTGTCGGAGGAGATATTTCATGATGATACGTGAGCGGATAGAAGAAAAATTAAGGGCGGCGTTCCAACCCGTATTCCTCGAagtag < 1:727418/139‑1 (MQ=255) aTGGAAACGGTAAAAGCGGCTAGTATTTAAAGGAATGGATGACATCTCAGCGTTGTCGGAGGAGATATTTCATGATGATACGTGAGCGGATAGAAGAAAAATTAAGGGCGGCGtt > 2:610422/1‑115 (MQ=255) aTGGAAACGGTAAAAGCGGCTAGTATTTAAAGGAATGGATGACATCTCAGCGTTGTCGGAGGAGATATTTCATGATGATACGTGAGCGGATAGAAGAAAAATTAAGGGCGGCGtt < 1:610422/115‑1 (MQ=255) ggAAACGGTAAAAGCGGCTAGTATTTAAAGGAATGGATGACATCTCAGCGTTGTCGGAGGAGATATTTCATGATGATACGTGAGCGGATAGAAGAAAAATTAAGGGCGGCGTTCCAACCCGTATTCCTCGAAGTAGTgg < 2:168950/139‑1 (MQ=255) aaaGCGGCTAGTATTTAAAGGAATGGATGACATCTCAGCGTTGTCGGAGgaga > 1:123118/1‑53 (MQ=255) aaaGCGGCTAGTATTTAAAGGAATGGATGACATCTCAGCGTTGTCGGAGgaga < 2:123118/53‑1 (MQ=255) gctgCTAGTATTTAAAGGAATGGATGACATCTCAGCGTTGTCGGAGGAGATATTTCATGATGATACGTGAGCGGATAGAAGAAAAATTAAGGGCGGCGTTCCAACCCGTATTCCTCGAAGTAGTGGATGAAAGCTATCg < 2:1211652/136‑1 (MQ=255) gCTAGTATTTAAAGGAATGGATGACATCTCAGCGTTGTCGGAGGAGATATTTCATGATGATACGTGAGCGGATAGAAGAAAAATTAAGGGCGGCGTTcc < 1:936146/99‑1 (MQ=255) gCTAGTATTTAAAGGAATGGATGACATCTCAGCGTTGTCGGAGGAGATATTTCATGATGATACGTGAGCGGATAGAAGAAAAATTAAGGGCGGCGTTcc > 2:936146/1‑99 (MQ=255) cTAGTATTTAAAGGAATGGATGACATCTCAGCGTTGTCGGAGGAGATATTTCATGATGATACGTGAGCGGATAGAAGAAAAATTAAGggcg < 2:597019/91‑1 (MQ=255) cTAGTATTTAAAGGAATGGATGACATCTCAGCGTTGTCGGAGGAGATATTTCATGATGATACGTGAGCGGATAGAAGAAAAATTAAGggcg > 1:597019/1‑91 (MQ=255) tAGTATTTAAAGGAATGGATGACATCTCAGCGTTGTCGGAGGAGATATTTCATGATGATACGTGAGCGGATAGAAGAAAAATTAAGGGCGGCGTTCCAACCCGTATTCCTCGAAGTAGTGGATGAAAGCTATCGTcaca > 1:267086/1‑139 (MQ=255) | CTGATGCGAGGCCTGTGTTTCAATCTTTAAATCAGTAAACTTCATACGCTTGACGGAAAAACCAGGACGAAACCTAAATATTTGTTGTTAAGCTGCAATGGAAACGGTAAAAGCGGCTAGTATTTAAAGGGATGGATGACATCTCAGCGTTGTCGGAGGAGATATTTCATGATGATACGTGAGCGGATAGAAGAAAAATTAAGGGCGGCGTTCCAACCCGTATTCCTCGAAGTAGTGGATGAAAGCTATCGTCACA > NC_000913/454304‑454559 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |