Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 1,287,152 T→C noncoding (85/171 nt)
T9A (ACT→GCT) 
rttR ←
tpr ←
rtT sRNA, processed from tyrT transcript
protamine‑like protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009131,287,1520TC100.0% 60.1 / NA 23noncoding (85/171 nt)
T9A (ACT→GCT) 
rttR
tpr
rtT sRNA, processed from tyrT transcript
protamine‑like protein
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base C (11/12);  total (11/12)

TTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTCGAACCTTCGAAGTCGATGACGG  >  NC_000913/1287045‑1287285
                                                                                                           |                                                                                                                                     
ttCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGCCGAACCTTAATCGAAGCTTCTCATCCTTccc                                                                                                        >  1:1291023/1‑139 (MQ=12)
  cAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGCCGAACCTTAATCGAAGCTTCTCATCCTTCCCCg                                                                                                      >  1:144133/1‑139 (MQ=2)
                                          tCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAATCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTc                                                              <  1:1309887/139‑1 (MQ=255)
                                             gcgcTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAATCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAgg                                                           <  2:644952/139‑1 (MQ=255)
                                              cgcTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAATCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAggg                                                          <  2:298074/139‑1 (MQ=255)
                                                 tGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAATCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACt                                                       >  1:407243/1‑139 (MQ=11)
                                                   cgcgcTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAATCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACttt                                                     >  2:782488/1‑139 (MQ=11)
                                                       cTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAATCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGaa                                                 <  1:782488/139‑1 (MQ=11)
                                                                      cGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAATCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTgatggtggtggg                                  >  2:76311‑M2/1‑127 (MQ=255)
                                                                        ttGCCTGCGGTAACGGTTCCTCGCCGGCGCTAGAGCCGAAACTTAAACAAAGCTTCTCCCCCTTCCCCGCATTGTCAGAATGTTTAATTGCGGATTCGTTAGGAAGTTCAAGGACTTTTGAAAGCGATGGTGGTggggg                                <  1:683655/139‑1 (MQ=255)
                                                                        ttGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAATCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTgatggtggtggggg                                >  2:407243‑M2/1‑125 (MQ=255)
                                                                        ttGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAATCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTgatggtggtggggg                                >  2:330475‑M2/1‑125 (MQ=255)
                                                                              gCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAATCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTACTTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTgatggtggtgggggaaggat                          <  1:102925‑M2/139‑21 (MQ=255)
                                                                                  cAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAATCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTgatggtggtgggggaaggattact                      <  1:199223‑M2/139‑25 (MQ=255)
                                                                                          tttcgcTGACGCTCGAGCCGAACCTAAATCGCAGCTTCTCATCCTTCCCCGCATGTGCAGAATATTTCATTGCGGCTTCGTTGGGAAGTTCACGGACTTTTGAAAGGgatggtggtgggggaaggattactcagcgctg              <  1:1384377‑M2/137‑33 (MQ=255)
                                                                                               cTGACGCTCGAGCCGAACCTTAATCGAAGCTTCTCATCCTTCCCCGCGTGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTgatggtggtggggg                                >  2:1001733‑M2/1‑102 (MQ=255)
                                                                                               cTGACGCTCGAGCCGAACCTTAATCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTgatggtggtggggg                                <  1:1001733‑M2/116‑15 (MQ=255)
                                                                                                  acgctCGAGCCGAACCTTAATCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTgatggtggtggggg                                >  2:961608‑M2/2‑99 (MQ=255)
                                                                                                  acgctCGAGCCGAACCTTAATCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTgatggtggtggggg                                <  1:961608‑M2/112‑15 (MQ=255)
                                                                                                      tCGAGCCGAACCTTAATCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTATTTGCGGATTCGTTGGGAAGTTCTGGGACTTTTGAAAGTgatggtggtggggg                                >  1:931620‑M2/1‑95 (MQ=255)
                                                                                                      tCGAGCCGAACCTTAATCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTgatggtggtgggggaaggattactcagcgctgcgcgcttcgccc  <  2:853900‑M2/139‑45 (MQ=255)
                                                                                                      tCGAGCCGAACCTTAATCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTgatggtggtggggg                                >  2:693849‑M2/1‑95 (MQ=255)
                                                                                                      tCGAGCCGAACCTTAATCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTgatggtggtggggg                                <  2:931620‑M2/109‑15 (MQ=255)
                                                                                                      tCGAGCCGAACCTTAATCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTgatggtggtggggg                                <  1:693849‑M2/109‑15 (MQ=255)
                                                                                                           |                                                                                                                                     
TTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTCGAACCTTCGAAGTCGATGACGG  >  NC_000913/1287045‑1287285

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: