Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,926,709	A→G	Y99H (TAT→CAT)	asnC ←	transcriptional activator of asnA, autorepressor

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,926,709	0	A	G	100.0%	305.9 / NA	85	Y99H (TAT→CAT)	asnC	transcriptional activator of asnA, autorepressor
Reads supporting (aligned to +/- strand):  ref base A (0/0);  new base G (41/44);  total (41/44)

TCAATGTCTCGGTGGACTGAATTTCATCAATTGTTTGGATCTTGTTGATAAGTACATGCTGGAGAGCGTCGATCGAACGGCACATCACTTTTATAAAGATGCTGTAGTGGCCGGTTGTGTAATAGGCTTCAGTGACTTCATCAAGGCTTTCCAGCTTTGCCAGCGCGGAAGGGTAGTCTTTGGCGCTCTTTAATATAATGCCGATAAAGCAGCCTACGTCATAACCGAGCTGCTTCGGGCTGACATCAATACGCGCCC  >  NC_000913/3926586‑3926843                                                                                                                            |                                                                                                                                       tCAATGTCTCGGTGGACTGAATTTCATCAATTGTTTGGATCTTGTTGATAAGTACATGCTGGAGAGCGTCGATCGAACGGCACATCACTTTTATAAAGATGCTGTAGTGGCCGGTTGTGTAATGGGCTTCAGTGACTtc                                                                                                                         >  1:1525467/1‑139 (MQ=255)   aaTGTCTCGGTGGACTGAATTTCATCAATTGTTTGGATCTTGTTGATAAGTACATGCTGGAGAGCGTCGATCGAACGGCACATCACTTTTATAAAGATGCTGTAGTGGCCGGTTGTGTAATGGGCTTCAGTGACTtcat                                                                                                                       <  1:310673/139‑1 (MQ=255)      gTCTCGGTGGACTGAATTTCATCAATTGTTTGGATCTTGTTGATAAGTACATGCTGGAGAGCGTCGATCGAACGGCACATCACTTTTATAAAGATGCTGTAGTGGCCGGTTGTGTAATGGGCTTCAGTGACTTCATCaa                                                                                                                    <  2:336161/139‑1 (MQ=255)           ggTGGACTGAATTTCATCAATTGTTTGGATCTTGTTGATAAGTACATGCTGGAGAGCGTCGATCGAACGGCACATCACTTTTATAAAGATGCTGTAGTGGCCGGTTGTGTAATGGGCTTCAGTGACTTCATCAAGGCtt                                                                                                               >  1:1375639/1‑139 (MQ=255)           ggTGGACTGAATTTCATCAATTGTTTGGATCTTGTTGATAAGTACATGCTGGAGAGCGTCGATCGAACGGCACATCACTTTTATAAAGATGCTGTAGTGGCCGGTTGTGTAATGGGCTTCAGTGACTTCATCAAGGCtt                                                                                                               >  1:788865/1‑139 (MQ=255)           ggTGGACTGAATTTCATCAATTGTTTGGATCTTGTTGATAAGTACATGCTGGAGAGCGTCGATCGAACGGCACATCACTTTTATAAAGATGCTGTAGTGGCCGGTTGTGTAATGGGCTTCAGTGACTTCATCAAGGCtt                                                                                                               >  1:1367454/1‑139 (MQ=255)           ggTGGACTGAATTTCATCAATTGTTTGGATCTTGTTGATAAGTACATGCTGGAGAGCGTCGATCGAACGGCACATCACTTTTATAAAGATGCTGTAGTGGCCGGTTGTGTAATGGGCTTCAGTGACTTCATCAAGGCtt                                                                                                               >  2:1481346/1‑139 (MQ=255)           ggTGGACTGAATTTCATCAATTGTTTGGATCTTGTTGATAAGTACATGCTGGAGAGCGTCGATCGAACGGCACATCACTTTTATAAAGATGCTGTAGTGGCCGGTTGTGTAATGGGCTTCAGTGACTTCATCAAGGCtt                                                                                                               >  2:987687/1‑139 (MQ=255)           ggTGGACTGAATTTCATCAATTGTTTGGATCTTGTTGATAAGTACATGCTGGAGAGCGACGATCGAACGGCACATCACTTTTATACAGATGCTGTAGTGGCCGGTTGTGTAATGGGCTTCAGTGACTTCATCAAGGCtt                                                                                                               >  2:1339094/1‑139 (MQ=255)             tGGACTGAATTTCATCAATTGTTTGGATCTTGTTGATAAGTACATGCTGGAGAGCGTCGATCGAACGGCACATCACTTTTATAAAGATGCTGTAGTGGCCGGTTGTGTAATGGGCTTCAGTGACTTCATCAAGGCTTTc                                                                                                             >  2:1359654/1‑139 (MQ=255)             tGGACTGAATTTCATCAATTGTTTGGATCTTGTTGATAAGTACATGCTGGAGAGCGTCGATCGAACGGCACATCACTTTTATAAAGATGCTGTAGTGGCCGGTTGTGTAATGGGCTTCAGTGACTTCATCAAGGCTTTc                                                                                                             >  2:219768/1‑139 (MQ=255)             tGGACTGAATTTCATCAATTGTTTGGATCTTGTTGATAAGTACATGCTGGAGAGCGTCGATCGAACGGCACATCACTTTTATAAAGATGCTGTAGTGGCCGGTTGTGTAATGGGCTTCAGTGACTTCATCAAGGCTTTc                                                                                                             >  1:438154/1‑139 (MQ=255)              ggACTGAATTTCATCAATTGTTTGGATCTTGTTGATAAGTACATGCTGGAGAGCGTCGATCGAACGGCACATCACTTTTATAAAGATGCTGTAGTGGCCGGTTGTGTAATGGGCTTCAGTGACTTCATCAAGGCTTTcc                                                                                                            <  2:207452/139‑1 (MQ=255)               gACTGAATTTCATCAATTGTTTGGATCTTGTTGATAAGTACATGCTGGAGAGCGTCGATCGAACGGCACATCACTTTTATAAAGATGCTGTAGTGGCCGGTTGTGTAATGGGCTTCAGTGACTTCATCaa                                                                                                                    >  1:549331/1‑130 (MQ=255)               gACTGAATTTCATCAATTGTTTGGATCTTGTTGATAAGTACATGCTGGAGAGCGTCGATCGAACGGCACATCACTTTTATAAAGATGCTGTAGTGGCCGGTTGTGTAATGGGCTTCAGTGACTTCATCaa                                                                                                                    <  2:549331/130‑1 (MQ=255)                         catcaATTGTTTGGATCTTGTTGATAAGTACATGCTGGAGAGCGTCGATCGAACGGCACATCACTTTTATAAAGATGCTGTAGTGGCCGGTTGTGTAATGGGCTTCAGTGACTTCATCAAGGCttt                                                                                                              >  1:1116959/1‑126 (MQ=255)                         catcaATTGTTTGGATCTTGTTGATAAGTACATGCTGGAGAGCGTCGATCGAACGGCACATCACTTTTATAAAGATGCTGTAGTGGCCGGTTGTGTAATGGGCTTCAGTGACTTCATCAAGGCttt                                                                                                              <  2:1116959/126‑1 (MQ=255)                           tcaATTGTTTGGATCTTGTTGATAAGTACATGCTGGAGAGCGTCGATCGAACGGCACATCACTTTTATAAAGATGCTGTAGTGGCCGGTTGTGTAATGGGCTTCAGTGACTTCATCAAGGCTTTCCAGCTTTGCCAgcg                                                                                               <  2:438154/139‑1 (MQ=255)                           tcaATTGTTTGGATCTTGTTGATAAGTACATGCTGGAGAGCGTCGATCGAACGGCACATCACTTTTATAAAGATGCTGTAGTGGCCGGTTGTGTAATGGGCTTCAGTGACTTCATCAAGGCTTTCCAGCTTTGCCAgcg                                                                                               <  2:1375639/139‑1 (MQ=255)                             aaTTGTTTGGATCTTGTTGATAAGTACATGCTGGAGAGCGTCGATCGAACGGCACATCACTTTTATAAAGATGCTGTAGTGGCCGGTTGTGTAATGGGCTTCAGTGACTTCATCAAGGCTTTCCAGCTTTGCCAGcgcg                                                                                             <  1:864759/139‑1 (MQ=255)                                  tttGGATCTTGTTGATAAGTACATGCTGGAGAGCGTCGATCGAACGGCACATCACTTTTATAAAGATGCTGTAGTGGCCGGTTGTGTAATGGGCTTCAGTGACTTCATCAAGGCTTTCCAGCTTTGCCAGCGCGGAAgg                                                                                        <  1:1359654/139‑1 (MQ=255)                                    tGGATCTTGTTGATAAGTACATGCTGGAGAGCGTCGATCGAACGGCACATCACTTTTATAAAGATGCTGTAGTGGCCGGTTGTGTAATGGGCTTCAGTGACTTCATCAAGGCTTTCCAGCTTTGCCAGCGCGGAAGGGt                                                                                      <  1:1481346/139‑1 (MQ=255)                                          ttgttgATAAGTACATGCTGGAGAGCGTCGATCGAACGGCACATCACTTTTATAAAGATGCTGTAGTGGCCGGTTGTGTAATGGGCTTCAGTGACTTCATCAAGGCTTTCCAGCTTTGCCAGCGCGGAAGGGTAGTCtt                                                                                <  2:1367454/139‑1 (MQ=255)                                            gttgATAAGTACATGCTGGAGAGCGTCGATCGAACGGCACATCACTTTTATAAAGATGCTGTAGTGGCCGGTTGTGTAATGGGCTTCAGTGACTTCATCAAGGCTTTCCAGCTTTGCCAgcg                                                                                               <  2:1147471/122‑1 (MQ=255)                                            gttgATAAGTACATGCTGGAGAGCGTCGATCGAACGGCACATCACTTTTATAAAGATGCTGTAGTGGCCGGTTGTGTAATGGGCTTCAGTGACTTCATCAAGGCTTTCCAGCTTTGCCAgcg                                                                                               >  1:1147471/1‑122 (MQ=255)                                            gttgATAAGTACATGCTGGAGAGCGTCGATCGAACGGCACATCACTTTTATAAAGATGCTGTAGTGGCCGGTTGTGTAATGGGCTTCAGTGACTTCATCAAGGCTTTCCAGCTTTGCCAGCGCGGAAgg                                                                                        <  1:208588/129‑1 (MQ=255)                                            gttgATAAGTACATGCTGGAGAGCGTCGATCGAACGGCACATCACTTTTATAAAGATGCTGTAGTGGCCGGTTGTGTAATGGGCTTCAGTGACTTCATCAAGGCTTTCCAGCTTTGCCAGCGCGGAAgg                                                                                        >  2:208588/1‑129 (MQ=255)                                               gATAAGTACATGCTGGAGAGCGTCGTTCGAACGGCACATCACTTTTATAAAGATGCTGTAGTGGCCGGTTGTGTAATGGGCTTCAGTGACTTCATCAAGACTTTCCAGCTTTGCCAGCGCGGAAGGGTAGTCTTTGgcg                                                                           <  1:809322/139‑1 (MQ=255)                                               gATAAGTACATGCTGGAGAGCGTCGATCGAACGGCACATCACTTTTATAAAGATGCTGTGGTGGCCGGTTGTGTAATGGGCTTCAGTGACTTCATCAAGGCTTTCCAGCTTTGCCAGCGCGGAAGGGTAGTCTTTGgcg                                                                           <  2:390382/139‑1 (MQ=255)                                               gATAAGTACATGCTGGAGAGCGTCGATCGAACGGCACATCACTTTTATAAAGATGCTGTAGTGGCCGGTTGTGTAATGGGCTTCAGTGACTTCATCAAGGCTTTCCAGCTTTGCCAGCGCGGAAGGGTAGTCTTTGgcg                                                                           <  2:123458/139‑1 (MQ=255)                                               gATAAGTACATGCTGGAGAGCGTCGATCGAACGGCACATCACTTTTATAAAGATGCTGTAGTGGCCGGTTGTGTAATGGGCTTCAGTGACTTCATCAAGGCTTTCCAGCTTTGCCAGCGCGGAAGGGTAGTCTTTGgcg                                                                           <  2:1596748/139‑1 (MQ=255)                                               gATAAGTACATGCTGGAGAGCGTCGATCGAACGGCACATCACTTTTATAAAGATGCTGTAGTGGCCGGTTGTGTAATGGGCTTCAGTGACTTCATCAAGGCTTTCCAGCTTTGCCAGCGCGGAAGGGTAGTCTTTGgcg                                                                           <  2:116857/139‑1 (MQ=255)                                               gATAAGTACATGCTGGAGAGCGTCGATCGAACGGCACATCACTTTTATAAAGATGCTGTAGTGGCCGGTTGTGTAATGGGCTTCAGTGACTTCATCAAGGCTTTCCAGCTTTGCCAGCGCGGAAGGGTAGTCTTTGgcg                                                                           <  2:866652/139‑1 (MQ=255)                                               gATAAGTACATGCTGGAGAGCGTCGATCGAACGGCACATCACTTTTATAAAGATGCTGTAGTGGCCGGTTGTGTAATGGGCTTCAGTGACTTCATCAAGGCTTTCCAGCTTTGCCAGCGCGGAAGGGTAGTCTTTGgcg                                                                           <  1:987687/139‑1 (MQ=255)                                               gATAAGTACATGCTGGAGAGCGTCGATCGAACGGCACATCACTTTTATAAAGATGCTGTAGTGGCCGGTTGTGTAATGGGCTTCAGTGACTTCATCAAGGCTTTCCAGCTTTGCCAGCGCGGAAGGGTAGTCTTTGgcg                                                                           <  1:882589/139‑1 (MQ=255)                                               gATAAGTACATGCTGGAGAGCGTCGATCGAACGGCACATCACTTTTATAAAGATGCTGTAGTGGCCGGTTGTGTAATGGGCTTCAGTGACTTCATCAAGGCTTTCCAGCTTTGCCAGCGCGGAAGGGTAGTCTTTGgcg                                                                           <  2:788865/139‑1 (MQ=255)                                                 tAAGTACATGCTGGAGAGCGTCGATCGAACGGCACATCACTTTTATAAAGATGCTGTAGTGGCCGGTTGTGTAATGGGCTTCAGTGACTTCATCAAGGCTTTCCAGCTTTGCCAGCGCGGAAGGGTAGTCTTTGgcgtt                                                                         <  1:1339094/139‑3 (MQ=255)                                                      aCATGCTGGAGAGCGTCGATCGAACGGCACATCACTTTTATAAAGATGCTGTAGTGGCCGGTTGTGTAATGGGCTTCAGTGACTTCATCAAGGCTTTCCAGCTTTGCCAGCGCGGAAGGGTAGTCTTTGgcg                                                                           >  2:1357781/1‑132 (MQ=255)                                                      aCATGCTGGAGAGCGTCGATCGAACGGCACATCACTTTTATAAAGATGCTGTAGTGGCCGGTTGTGTAATGGGCTTCAGTGACTTCATCAAGGCTTTCCAGCTTTGCCAGCGCGGAAGGGTAGTCTTTGgcg                                                                           <  1:1357781/132‑1 (MQ=255)                                                          gCTGGAGAGCGTCGATCGAACGGCACATCACTTTTATAAAGATGCTGTAGTGGCCGGTTGTGTAATGGGCTTCAGTGACTTCATCAAGGCTTTCCAGCTTTGCCAGCGCGGAAGGGTAGTCTTTGGCGCTCTTTAatat                                                                <  1:820320/139‑1 (MQ=255)                                                          gCTGGAGAGCGTCGATCGAACGGCACATCACTTTTATAAAGATGCTGTAGTGGCCGGTTGTGTAATGGGCCTCAGTGACTTCATCAAGGCTTTCCAGCTTTGCCAGCGCGGAAGGGTAGTCTTTGGCGCTCTTTAatat                                                                >  2:465114/1‑139 (MQ=255)                                                              gagaGCGTCGATCGAACGGCACATCACTTTTATAAAGATGCTGTAGTGGCCGGTTGTGTAATGGGCTTCAGTGACTTCATCAAGGCTTTCCAGCTTTGCCAGCGCGGAAGGGTAGTCTTTGGCGct                                                                         >  2:244332/1‑126 (MQ=255)                                                              gagaGCGTCGATCGAACGGCACATCACTTTTATAAAGATGCTGTAGTGGCCGGTTGTGTAATGGGCTTCAGTGACTTCATCAAGGCTTTCCAGCTTTGCCAGCGCGGAAGGGTAGTCTTTGGCGct                                                                         <  1:244332/126‑1 (MQ=255)                                                               agagCGTCGATCGAACGGCACATCACTTTTATAAAGATGCTGTAGTGGCCGGTTGTGTAATGGGCTTCAGTGACTTCATCAAGGCTTTCCAGCTTTGCCAGCGCGGAAGGGt                                                                                      >  2:630380/1‑112 (MQ=255)                                                               agagCGTCGATCGAACGGCACATCACTTTTATAAAGATGCTGTAGTGGCCGGTTGTGTAATGGGCTTCAGTGACTTCATCAAGGCTTTCCAGCTTTGCCAGCGCGGAAGGGt                                                                                      <  1:630380/112‑1 (MQ=255)                                                               agagCGTCGATCGAACGGCACATCACTTTTATAAAGATGCTGTAGTGGCCGGTTGTGTAATGGGCTTCAGTGACTTCATCAAGGCTTTCCAGCTTTGCCAGCGCGGAAGGGTAGTCTTTGGCGCTCTTTAATATAATGc                                                           >  2:250773/1‑139 (MQ=255)                                                                   cGTCGATCGAACGGCACATCACTTTTATAAAGATGCTGTAGTGGCCGGTTGTGTAATGGGCTTCAGTGAc                                                                                                                            <  1:170767/70‑1 (MQ=255)                                                                   cGTCGATCGAACGGCACATCACTTTTATAAAGATGCTGTAGTGGCCGGTTGTGTAATGGGCTTCAGTGAc                                                                                                                            >  2:170767/1‑70 (MQ=255)                                                                   cGTCGATCGAACGGCACATCACTTTTATAAAGATGCTGTAGTGGCCGGTTGTGTAATGGGCTTCAGTGACTTCATCAAGGCTTTCCAGCTTTGCCAGCGCGGAAGGGTAGTCTTTGgcg                                                                           >  1:1476014/1‑119 (MQ=255)                                                                   cGTCGATCGAACGGCACATCACTTTTATAAAGATGCTGTAGTGGCCGGTTGTGTAATGGGCTTCAGTGACTTCATCAAGGCTTTCCAGCTTTGCCAGCGCGGAAGGGTAGTCTTTGgcg                                                                           <  2:1476014/119‑1 (MQ=255)                                                                   cGTCGATCGAACGGCACATCACTTTTATAAAGATGCTGTAGTGGCCGGTTGTGTAATGGGCTTCAGTGACTTCATCAAGGCTTTCCAGCTTTGCCAGCGCGGAAGGGTAGTCTTTGGCGCTCTTTAATATAATGCCGAt                                                       >  2:1212526/1‑139 (MQ=255)                                                                         tcgaACGGCACATCACTTTTATAAAGATGCTGTAGTGGCCGGTTGTGTAATGGGCTTCAGTGACTTCATCAAGGCTTTCCAGCTTTGCCAGCGCGGAAGGGTAGTCTTTGGCGCTCTTTAATATAATGCCGATAAagca                                                 <  1:465114/139‑1 (MQ=255)                                                                                              taAAGATGCTGTAGTGGCCGGTTGTGTAATGGGCTTCAGTGACTTCATCAAGGCTTTCCAGCTTTGCCAGCGCGGAAGGGTAGTCTTTGGCGCTCTTTAATATAATGCCGATAAAGCAGCCTACGTCATAACCGAgctg                            >  2:38318/1‑139 (MQ=255)                                                                                                aaGATGCTGTAGTGGCCGGTTGTGTAATGGGCTTCAGTGACTTCATCAAGGCTTTCCAGCTTTGCCAGCGCGGAAGGGTAGTCTTTGGCGCTCTTTAATATAATGCCGATAAAGCAGCCTACGTCATAACCGAgctgct                          >  2:870195/1‑139 (MQ=255)                                                                                                  gATGCTGTAGTGGCCGGTTGTGTAATGGGCTTCAGTGACTTCATCAAGGCTTTCCAGCTTTGCCAGCGCGGAAGGGTAGTCTTTGGCGCTCTTTAATATAATGCCGATAAAGCAGCCTACGTCATAACCGAGCTGCTTc                        <  2:847416/139‑1 (MQ=255)                                                                                                   aTGCTGTAGTGGCCGGTTGTGTAATGGGCTTCAGTGACTTCATCAAGGCTTTCCAGCTTTGCCAGCGCgg                                                                                            >  1:196340/1‑70 (MQ=255)                                                                                                   aTGCTGTAGTGGCCGGTTGTGTAATGGGCTTCAGTGACTTCATCAAGGCTTTCCAGCTTTGCCAGCGCgg                                                                                            <  2:196340/70‑1 (MQ=255)                                                                                                   aTGCTGTAGTGGCCGGTTGTGTAATGGGCTTCAGTGACTTCATCAAGGCTTTCCAGCTTTGCCAGCGCGGAAGGGTAGTCTTTGgcg                                                                           >  2:1470081/1‑87 (MQ=255)                                                                                                   aTGCTGTAGTGGCCGGTTGTGTAATGGGCTTCAGTGACTTCATCAAGGCTTTCCAGCTTTGCCAGCGCGGAAGGGTAGTCTTTGgcg                                                                           <  1:1470081/87‑1 (MQ=255)                                                                                                   aTGCTGTAGTGGCCGGTTGTGTAATGGGCTTCAGTGACTTCATCAAGGCTTTCCAGCTTTGCCAGCGCGGAAGGGTAGTCTTTGgcg                                                                           <  2:1210294/87‑1 (MQ=255)                                                                                                   aTGCTGTAGTGGCCGGTTGTGTAATGGGCTTCAGTGACTTCATCAAGGCTTTCCAGCTTTGCCAGCGCGGAAGGGTAGTCTTTGgcg                                                                           >  1:1210294/1‑87 (MQ=255)                                                                                                   aTGCTGTAGTGGCCGGTTGTGTAATGGGCTTCAGTGACTTCATCAAGGCTTTCCAGCTTTGCCAGCGCGGAAGGGTAGTCTTTGGCGCTCTTTAATATAATGCCGATAAAGCAGCCTACGTCATAACCGAGCTGCTTCg                       >  1:55666/1‑139 (MQ=255)                                                                                                   aTGCTGTAGTGGCCGGTTGTGTAATGGGCTTCAGTGACTTCATCAAGGCTTTCCAGCTTTGCCAGCGCGGAAGGGTAGTCTTTGGCGCTCTTTAATATAATGCCGATAAAGCAGCCTACGTCATAACCGAGCTGCTTCg                       >  2:534048/1‑139 (MQ=255)                                                                                                   aTGCTGTAGTGGCCGGTTGTGTAATGGGCTTCAGTGACTTCATCAAGGCTTTCCAGCTTTGCCAGCGCGGAAGGGTAGTCTTTGGCGCTCTTTAATATAATGCCGATAAAGCAGCCTACGTCATAACCGAGCTGCTTCg                       >  2:736089/1‑139 (MQ=255)                                                                                                             ggCCGGTTGTGTAATGGGCTTCAGTGACTTCATCAAGGCTTTCCAGCTTTGCCAGCGCGGAAGGGTAGTCTTTGGCGct                                                                         >  1:697982/1‑79 (MQ=255)                                                                                                             ggCCGGTTGTGTAATGGGCTTCAGTGACTTCATCAAGGCTTTCCAGCTTTGCCAGCGCGGAAGGGTAGTCTTTGGCGct                                                                         <  2:697982/79‑1 (MQ=255)                                                                                                              gCCGGTTGTGTAATGGGCTTCAGTGACTTCATCaa                                                                                                                    >  1:999318/1‑35 (MQ=255)                                                                                                              gCCGGTTGTGTAATGGGCTTCAGTGACTTCATCAAGGCTTTCCAGCTTTGCCAGCGCGGAAGGGTAGTCTTTGGCGCTCTTTAATATAATGCCGATAAAGCAGCCTACGTCATAACCGAGCTGCTTCGGGCTGACATCa            >  1:374877/1‑139 (MQ=255)                                                                                                              gCCGGTTGTGTAATGGGCTTCAGTGACTTCATCAAGGCTTTCCAGCTTTGCCAGCGCGGAAGGGTAGTCTTTGGCGCTCTTTAATATAATGCCGATAAAGCAGCCTACGTCATAACCGAGCTGCTTCGGGCTGACATCa            >  1:1392561/1‑139 (MQ=255)                                                                                                              gCCGGTCGTGTAATGGGCTTCAGTGACTTCATCaa                                                                                                                    <  2:999318/35‑1 (MQ=255)                                                                                                                 ggTTGTGTAATGGGCTTCAGTGACTTCATCAAGGCTTTCCAGCTTTGCCAGCGCGGAAGGGTAGTCTTTGGCGCTCTTTAATATAATGCCGATAAAGCAGCCTACGTCATAACCGAGCTGCTTCGGGCTGACATCAATa         >  1:66779/1‑139 (MQ=255)                                                                                                                   ttGTGTAATGGGCTTCAGTGACTTCATCAAGGCTTTCCAGCTTTGCCAGcgcg                                                                                             >  1:801998/1‑53 (MQ=255)                                                                                                                   ttGTGTAATGGGCTTCAGTGACTTCATCAAGGCTTTCCAGCTTTGCCAGcgcg                                                                                             <  2:801998/53‑1 (MQ=255)                                                                                                                   ttGTGTAATGGGCTTCAGTGACTTCATCAAGGCTTTCCAGCTTTGCCAGCGCGGAAGGGTAGTCTTTGgcg                                                                           <  1:836740/71‑1 (MQ=255)                                                                                                                   ttGTGTAATGGGCTTCAGTGACTTCATCAAGGCTTTCCAGCTTTGCCAGCGCGGAAGGGTAGTCTTTGgcg                                                                           >  2:836740/1‑71 (MQ=255)                                                                                                                   ttGTGTAATGGGCTTCAGTGACTTCATCAAGGCTTTCCAGCTTTGCCAGCGCGGAAGGGTAGTCTTTGGCGCTCTTTAATATAATGCCGATAAAGCAGTCTACGTCATAACCGAGCTGCTTCGGGC‑‑ACATCAATAcgcg     >  1:1015009/1‑139 (MQ=255)                                                                                                                   ttGTGTAATGGGCTTCAGTGACTTCATCAAGGCTTTCCAGCTTTGCCAGCGCGGAAGGGTAGTCTTTGGCGCTCTTTAATATAATGCCGATAAAGCAGCCTACGTCATAACCGAGCTGCTTCGGGCTGACATCAATAcg       >  2:1229678/1‑139 (MQ=255)                                                                                                                   ttGTGTAATGGGCTTCAGTGACTTCATCAAGGCTTTCCAGCTTTGCCAGCGCGGAAGGGTAGTCTTTGGCGCTCTTTAATATAATGCCGATAAAGCAGCCTACGTCATAACCGAGCTGCTTCGGGCTGACATCAATAcg       >  1:576296/1‑139 (MQ=255)                                                                                                                   ttGTGTAATGGGCTTCAGTGACTTCATCAAGGCTTTCCAGCTTTGCCAGCGCGGAAGGGTAGTCTTTGGCGCTCTTTAATATAATGCCGATAAAGCAGCCTACGTCATAACCGAGCTGCTTCGGGCTGACATCAATAcg       <  1:250773/139‑1 (MQ=255)                                                                                                                   ttGTGTAATGGGCTTCAGTGACTTCATCAAGGCTTTCCAGCTTTGCCAGCGCGGAAGGGTAGTCTTTGGCGCTCTTTAATATAATGCCGATAAAGCAGCCTACGTCATAACCGAGCTGCTTCGGGCTGACATCAATAcg       <  1:219768/139‑1 (MQ=255)                                                                                                                     gtgtAATGGGCTTCAGTGACTTCATCAAGGCTTTCCAGCTTTGCCAGCGCGGAAGGGTAGTCTTTGGCGCTCTTTAATATAATGCCGATAAAGCAGCCTACGTCATAACCGAGCTGCTTCGGGCTGACATCAATAcgcg     <  2:1392561/139‑1 (MQ=255)                                                                                                                      tgtAATGGGCTTCAGTGACTTCATCAAGGCTTTCCAGCTTTGCCAGCGCGGAAGGGTAGTCTTTGGCGCTCTTTAATATAATGCCGATAAAGCAGCCTACGTCATAACCGAGCTGCTTCGGGCTGACATCAATACgcgc    <  1:38318/139‑1 (MQ=255)                                                                                                                        tAATGGGCTTCAGTGACTTCATCAAGGCTTTCCAGCTTTGCCAGCGCGGAAGGGTAGTCTTTGgcg                                                                           <  2:1471751/66‑1 (MQ=255)                                                                                                                        tAATGGGCTTCAGTGACTTCATCAAGGCTTTCCAGCTTTGCCAGCGCGGAAGGGTAGTCTTTGgcg                                                                           >  1:1471751/1‑66 (MQ=255)                                                                                                                        tAATGGGCTTCAGTGACTTCATCAAGGCTTTCCAGCTTTGCCAGCGCGGAAGGGTAGTCTTTGGCGCTCTTTAATATAATGCCGATAAAGCAGCCTACGTCATAACCGAGCTGCTTCGGGCTGACATCAATACGCGccc  <  1:736089/139‑1 (MQ=255)                                                                                                                            |                                                                                                                                       TCAATGTCTCGGTGGACTGAATTTCATCAATTGTTTGGATCTTGTTGATAAGTACATGCTGGAGAGCGTCGATCGAACGGCACATCACTTTTATAAAGATGCTGTAGTGGCCGGTTGTGTAATAGGCTTCAGTGACTTCATCAAGGCTTTCCAGCTTTGCCAGCGCGGAAGGGTAGTCTTTGGCGCTCTTTAATATAATGCCGATAAAGCAGCCTACGTCATAACCGAGCTGCTTCGGGCTGACATCAATACGCGCCC  >  NC_000913/3926586‑3926843

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑