| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 4,442,007 | T→C | E57G (GAG→GGG) | msrA ← | methionine sulfoxide reductase A |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,442,007 | 0 | T | C | 100.0% | 246.9 / NA | 72 | E57G (GAG→GGG) | msrA | methionine sulfoxide reductase A |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (34/38); total (34/38) | |||||||||||
TCGTAAACAATGCGTACCGCTTCGGCATGACCCGTATCACCGGAGCACACTTCCCGATAAGTCGGATTTGGCGTATAGCCGCCGGTATAGCCTGCGGCGGTGCTGTAAACGCCGGGTAACTGCCAGAACAGACGCTCCACACCCCAGAAACAACCCATCGCAAAAATGGCAATCTCCATTCCGTCAGGTACATTGGTCATTGAGTGACCGTTGACCGCATGCAGCGTGGCTACGGGCATCGGGGTGTTACGTCCAGGCAGGGCATCGGCG > NC_000913/4441872‑4442141 | tCGTAAACAATGCGTACCGCTTCGGCATGACCCGTATCACCGGAGCACACTTCCCGATAAGTCGGATTTGGCGTATAGCCGCCGGTATAGCCTGCGGCGGTGCTGTAAACGCCGGGTAACTGCCAGAACAGACGCCCca < 2:536445/139‑1 (MQ=255)tCGTAAACAATGCGTACCGCTTCGGCATGACCCGTATCACCGGAGCACACTTCCCGATAAGTCGGATTTGGCGTATAGCCGCCGGTATAGCCTGCGGCGGTGCTGTAAACGCCGGGTAACTGCCAGAACAGACGCCCca < 1:1438643/139‑1 (MQ=255) cGTAAACAATGCGTACCGCTTCGGCATGACCCGTATCACCGGAGCACACTTCCCGATAAGTCGGATTTGGCGTATAGCCGCCGGTATAGCCTGCGGCGGTGCTGTAAACGCCGGGTAACTGCCAGAACAGACGCCCcac > 1:841648/1‑139 (MQ=255) cGTAAACAATGCGTACCGCTTCGGCATGACCCGTATCACCGGAGCACACTTCCCGATAAGTCGGATTTGGCGTATAGCCGCCGGTATAGCCTGCGGCGGTGCTGTAAACGCCGGGTAACTGCCAGAACAGACGCCCcac < 1:1043719/139‑1 (MQ=255) aCAATGCGTACCGCTTCGGCATGACCCGTATCACCGGAGCACACTTCCCGATAAGTCGGATTTGGCGTATAGCCGCCGGTATAGCCTGCGGCGGTGCTGTAAACGCCGGGTAACTGCCAGAACAGACGCCCCACAcccc < 1:1474385/139‑1 (MQ=255) aTGCGTACCGCTTCGGCATGACCCGTATCACCGGAGCACACTTCCCGATAAGTCGGATTTGGCGTATAGCCGCCGGTATAGCCTGCGGCGGTGCTGTAAACGCCGGGTAACTGCCAGAACAGACGCCCCACACCCCAGa > 1:1539905/1‑139 (MQ=255) aTGCGTACCGCTTCGGCATGACCCGTATCACCGGAGCACACTTCCCGATAAGTCGGATTTGGCGTATAGCCGCCGGTATAGCCTGCGGCGGTGCTGTAAACGCCGGGTAACTGCCAGAACAGACGCCCCACACCCCAGa > 2:410489/1‑139 (MQ=255) tGCGTACCGCTTCGGCATGACCCGTATCACCGGAGCACACTTCCCGATAAGTCGGATTTGGCGTATAGCCGCCGGTATAGCCTGCGGCGGTGCTGTAAACGCCGGGTAACTGCCAGAACAGACGCCCCACACCCCAGaa > 1:746722/1‑139 (MQ=255) tGCGTACCGCTTCGGCATGACCCGTATCACCGCAGCACACTTCCCGATAAGTCGGATTTGGCGTATAGCCGCCGGTATAGCCTGCGGCGGGGCTGTATACGCCGGGTAACTGCCAGAACAGACGCCCCACACCCCAGaa > 2:1490655/1‑139 (MQ=255) gCGTACCGCTTCGGCATGACCCGTATCACCGGAGCACACTTCCCGATAAGTCGGATTTGGCGTATAGCCGCCGGTATAGCCTGCGGCGGTGCTGTAAACGCCGGGTAACTGCCAGAACAGACGCCCCACACCCCAGaaa > 1:996770/1‑139 (MQ=255) ttCGGCATGACCCGTATCACCGGAGCACACTTCCCGATAAGTCGGATTTGGCGTATAGCCGCCGGTATAGCCTGCGGCGGTGCTGTAAACGCCGGGTAACTGCCAGAACAGACGCCCCACACCCCAGAAACAACCCATc > 2:1256268/1‑139 (MQ=255) ttCGGCATGACCCGTATCACCGGAGCACACTTCCCGATAAGTCGGATTTGGCGTATAGCCGCCGGTATAGCCTGCGGCGGTGCTGTAAACGCCGGGTAACTGCCAGAACAGACGCCCCACACCCCAGAAACAACCCATc > 2:815928/1‑139 (MQ=255) aTGACCCGTATCACCGGAGCACACTTCCCGATAAGTCGGATTTGGCGTATAGCCGCCGGTATAGCCTGCGGCGGTGCTGTAAACGCCGGGTAACTGCCAGAACAGACGCCCCACACCCCAGAAACAACCCATCGCaaaa < 1:461502/139‑1 (MQ=255) cccGTATCACCGGAGCACACTTCCCGATAAGTCGGATTTGGCGTATAGCCGCCGGTATAGCCTGCGGCGGTGCTGTAAACGCCGGGTAACTGCCAGAACAGACGCCCca > 2:1484407/1‑109 (MQ=255) cccGTATCACCGGAGCACACTTCCCGATAAGTCGGATTTGGCGTATAGCCGCCGGTATAGCCTGCGGCGGTGCTGTAAACGCCGGGTAACTGCCAGAACAGACGCCCca < 1:1484407/109‑1 (MQ=255) ccGTATCACCGGAGCACACTTCCCGATAAGTCGGATTTGGCGTATAGCCGCCGGTATAGCCTGCGGCGGTGCTGTAAACGCCGGGTAACTGCCAGAACAGACGCCCCACACCCCAGAAACAACCCATCGCAAAAATGGc < 2:831117/139‑1 (MQ=255) ccGTATCACCGGAGCACACTTCCCGATAAGTCGGATTTGGCGTATAGCCGCCGGTATAGCCTGCGGCGGTGCTGTAAACGCCGGGTAACTGCCAGAACAGACGCCCCACACCCCAGAAACAACCCATCGCAAAAATGGc < 2:798733/139‑1 (MQ=255) ccGTATCACCGGAGCACACTTCCCGATAAGTCGGATTTGGCGTATAGCCGCCGGTATAGCCTGCGGCGGTGCTGTAAACGCCGGGTAACTGCCAGAACAGACGCCCCACACCCCAGAAACAACCCATCGCAAAAATGGc < 1:410489/139‑1 (MQ=255) ccGTATCACCGGAGCACACTTCCCGATAAGTCGGATTTGGCGTATAGCCGCCGGTATAGCCTGCGGCGGTGCTGTAAACGCCGGGTAACTGCCAGAACAGACGCCCCACACCCCAGAAACAACCCATCGCAAAAATGGc < 1:525695/139‑1 (MQ=255) ccGTATCACCGGAGCACACTTCCCGATAAGTCGGATTTGGCGTATAGCCGCCGGTATAGCCTGCGGCGGTGCTGTAAACGCCGGGTAACTGCCAGAACAGACGCCCCACACCCCAGAAACAACCCATCGCAAAAATGGc < 2:1065277/139‑1 (MQ=255) cGGAGCACACTTCCCGATAAGTCGGATTTGGCGTATAGCCGCCGGTATAGCCTGCGGCGGTGCTGTAAACGCCGGGTAACTGCCAGAACAGACGCCCCACACCCCAGAAACAACCCATCGCAAAAATGGCAATCTCCAt > 2:1285750/1‑139 (MQ=255) ggAGCACACTTCCCGATAAGTCGGATTTGGCGTATAGCCGCCGGTATAGCCTGCGGCGGTGCTGTAAACGCCGGGTAACTGCCAGAACAGACGCCCCACACCCCAGAAACAACCCATCGCAAAAATGGCAATCTCCAtt > 2:567509/1‑139 (MQ=255) ggAGCACACTTCCCGATAAGTCGGATTTGGCGTATAGCCGCCGGTATAGCCTGCGGCGGTGCTGTAAACGCCGGGTAACTGCCAGAACAGACGCCCCACACCCCAGAAACAACCCATCGCAAAAATGGCAATCTCCAtt < 1:815928/139‑1 (MQ=255) aGCACACTTCCCGATAAGTCGGATTTGGCGTATAGCCGCCGGTATAGCCTGCGGCGGTGCTGTAAACGCCGGGTAACTGCCAGAACAGACGCCCCACACCCCAGAAACTACCCATCGCAAAAATGGAAATCTCCATTca < 1:148673/139‑2 (MQ=255) cacaCTTCCCGATAAGTCGGATTTGGCGTATAGCCGCCGGTATAGCCTGCGGCGGTGCTGTAAACGCCGGGTAACTGCCAGAACAGACGCCCCACACCCCAGAAACAACCCATCGCAAAAATGGCAATCTCCATTCCGt > 1:517831/1‑139 (MQ=255) acacTTCCCGATAAGTCGGATTTGGCGTATAGCCGCCGGTATAGCCTGCGGCGGTGCTGTAAACGCCGGGTAACTGCCAGAACAGACGCCCCACACCCCAGAAACAACCCATCGCAAAAATGGCAATCTCCATTCCGTc < 1:154295/139‑1 (MQ=255) acttcctcgcaaGTCGGATTTGGCGTATAGCCGCCGGTATAGCCTGCGGCCGTGCTGTGAACGCCGGGTAATTGTCAGAACAGACGCCGCACACCCCAGAAGCAACCCACCGCAAAAATGGCAATCTCCATTCCGCCAg < 1:1490655/129‑1 (MQ=255) cccGATAAGTCGGATTTGGCGTATAGCCGCCGGTATAGCCTGCGGCGGTGCTGTAAACGCCGGGTAACTGCCAGAACAGACGCCCCACACCCCAGAAACAACCCATCGCAAAAATGGCAATCTCCATTCCGTCAGGTAc > 2:1606665/1‑139 (MQ=255) cGATAAGTCGGATTTGGCGTATAGCCGCCGGTATAGCCTGCGGCGGTGCTGTAAACGCCGGGTAACTGCCAGAACAGACGCCCCACACCCCAGAAACAACCCATCGCAAAAATGGCAATCTCCATTCCGTCAGGTACAt < 2:746722/139‑1 (MQ=255) cGATAAGTCGGATTTGGCGTATAGCCGCCGGTATAGCCTGCGGCGGTGCTGTAAACGCCGGGTAACTGCCAGAACAGACGCCCCACACCCCAGAAACAACCCATCGCAAAAATGGCAATCTCCATTCCGTCAGGTACAt < 2:684578/139‑1 (MQ=255) aaGTCGGATTTGGCGTATAGCCGCCGGTATAGCCTGCGGCGGTGCTGTAAACGCCGGGTAACTGCCAGAACAGACGCCCCACACCCCAGAAACAACCCATCGCAAAAATGGCAATCTCCATTCCGTCAGGTACATTGGt > 2:1279694/1‑139 (MQ=255) gTCGGATTTGGCGTATAGCCGCCGGTATAGCCTGCGGCGGTGCTGTAAACGCCGGGTAACTGCCAGAACAGACGCCCCACACCCCAGAAACAACCCATCGCAAAAATGGCAATCTCCATTCCGTCAGGTACAt < 1:534037/133‑1 (MQ=255) gTCGGATTTGGCGTATAGCCGCCGGTATAGCCTGCGGCGGTGCTGTAAACGCCGGGTAACTGCCAGAACAGACGCCCCACACCCCAGAAACAACCCATCGCAAAAATGGCAATCTCCATTCCGTCAGGTACAt > 2:534037/1‑133 (MQ=255) gTCGGATTTGGCGTATAGCCGCCGGTATAGCCTGCGGCGGTGCTGTAAACGCCGGGTAACTGCCAGAACAGACGCCCCACACCCCAGAAACAACCCATCGCAAAAATGGCAATCTCCATTCCGTCAGGTACATTGGTCa > 1:793350/1‑139 (MQ=255) gTCGGATTTGGCGTATAGCCGCCGGTATAGCCTGCGGCGGTGCTGTAAACGCCGGGTAACTGCCAGAACAGACGCCCCACACCCCAGAAACAACCCATCGCAAAAATGGCAATCTCCATTCCGTCAGGTACATTGGTCa < 2:517831/139‑1 (MQ=255) gTCGGATTTGGCGTATAGCCGCCGGTATAGCCTGCGGCGGTGCTGTAAACGCCGGGTAACTGCCAGAACAGACGCCCCACACCCCAGAAACAACCCATCGCAAAAATGGCAATCTCCATTCCGTCAGGTACATTGGTCa < 1:1279694/139‑1 (MQ=255) gTCGGATTTGGCGTATAGCCGCCGGTATAGCCTGCGGCGGTGCTGTAAACGCCGGGTAACTGCCAGAACAGACGCCCCACACCCCAGAAACAACCCATCGCAAAAATGGCAATCTCCATTCCGTCAGGTACATTGGTCa > 1:547001/1‑139 (MQ=255) aTTTGGCGTATAGTCGCCGGTATAGCCTGCGGCGGTGCTGTAAACGCCGGGTAACTGCCAGAACAGACGCCCCACACCCCAGAAACAACCCATCGCAAAAATGGCAATCTCCATTCCGTCAGGTACATTGGTCATTGAg < 1:501563/139‑1 (MQ=255) taGCCGCCGGTATAGCCTGCGGCGGTGCTGTAAACGCCGGGTAACTGCCAGAACAGACGCCCCACAcccc < 1:1113954/70‑1 (MQ=255) taGCCGCCGGTATAGCCTGCGGCGGTGCTGTAAACGCCGGGTAACTGCCAGAACAGACGCCCCACAcccc > 2:1113954/1‑70 (MQ=255) taGCCGCCGGTATAGCCTGCGGCGGTGCTGTAAACGCCGGGTAACTGCCAGAACAGACGCCCCACACCCCAGAAACAACCCATCGCAAAAATGGCAATCTCCATTcc > 1:1366020/1‑107 (MQ=255) taGCCGCCGGTATAGCCTGCGGCGGTGCTGTAAACGCCGGGTAACTGCCAGAACAGACGCCCCACACCCCAGAAACAACCCATCGCAAAAATGGCAATCTCCATTcc < 2:1366020/107‑1 (MQ=255) aGCCGCCGGTATAGCCTGCGGCGGTGCTGTAAACGCCGGGTAACTGCCAGAACAGACGCCCCACACCCCAGAAACAACCCATCGCAAAAATGGCAATCTCCATTCCGTCAGGTACATTGGTCATTGAGTGACCGTTGAc < 1:567509/139‑1 (MQ=255) gccgGTATAGCCTGCGGCGGTGCTGTAAACGCCGGGTAACTGCCAGAACAGACGCCCCACACCCCAGAAACAACCCATCGCAAAAATGGCAATCTCCATTCCGTCAGGTACATTGGTCATTGAGTGACCGTTGACCGCa < 2:841648/139‑1 (MQ=255) ccgGTATAGCCTGCGGCGGTGCTGTAAACGCCGGGTAACTGCCAGAACAGACGCCCCACACCCCAGAAACAACCCATCGCAAAAATGGCAATCTCCATTCCGTc > 2:952128/1‑104 (MQ=255) ccgGTATAGCCTGCGGCGGTGCTGTAAACGCCGGGTAACTGCCAGAACAGACGCCCCACACCCCAGAAACAACCCATCGCAAAAATGGCAATCTCCATTCCGTc < 1:952128/104‑1 (MQ=255) ccgGTATAGCCTGCGGCGGTGCTGTAAACGCCGGGTAACTGCCAGAACAGACGCCCCACACCCCAGAAACAACCCATCGCAAAAATGGCAATCTCCATTCCGTCAGGTACATTGGTCATTGAGTGACCGTTGACCGCAt > 1:1013261/1‑139 (MQ=255) ataGCCTGCGGCGGTGCTGTAAACGCCGGGTAACTGCCAGAACAGACGCCCCACACCCCAGAAACAACCCATCGCAAAAATGGCAATCTCCATTCCGTCAGGTACATTGGTCATTGAGTGACCGTTGACCGCATGCAGc < 2:1013261/139‑1 (MQ=255) tGCGGCGGTGCTGTAAACGCCGGGTAACTGCCAGAACAGACGCCCCACACCCCAGAAACAACCCATCGCAAAAATGGCAATCTCCAtt > 2:1458770/1‑88 (MQ=255) tGCGGCGGTGCTGTAAACGCCGGGTAACTGCCAGAACAGACGCCCCACACCCCAGAAACAACCCATCGCAAAAATGGCAATCTCCAtt < 1:1458770/88‑1 (MQ=255) cggcggTGCTGTAAACGCCGGGTAACTGCCAGAACAGACGCCCCACACCCCAGAAACAACCCATCGCAAAAATGGCAATCTCCATTCCGTCAGGTACATTGGTCATTGAGTGACCGTTGACCGCATGCAGCGTGGCTAc > 2:746731/1‑139 (MQ=255) cggcggTGCTGTAAACGCCGGGTAACTGCCAGAACAGACGCCCCACACCCCAGAAACAACCCATCGCAAAAATGGCAATCTCCATTCCGTCAGGTACATTGGTCATTGAGTGACCGTTGACCGCATGCAGCGTGGCTAc > 1:1184880/1‑139 (MQ=255) cggcggTGCTGTAAACGCCGGGTAACTGCCAGAACAGACGCCCCACACCACAGAAACAACCCATCGCAAAAATGGCAATCTcc > 1:302581/1‑83 (MQ=255) cggcggTGCTGTAAACGCCGGGTAACTGCCAGAACAGACGCCCCACACCACAGAAACAACCCATCGCAAAAATGGCAATCTcc < 2:302581/83‑1 (MQ=255) gTGCTGTAAACGTCGGGTAACTGCCAGAACAGACGCCCCACACCCCAGAAACAACCCATCGCAAAAATGGCAATCTCCATTCCGTCAGGTACATTGGTCa > 2:1031199/1‑100 (MQ=255) gTGCTGTAAACGTCGGGTAACTGCCAGAACAGACGCCCCACACCCCAGAAACAACCCATCGCAAAAATGGCAATCTCCATTCCGTCAGGTACATTGGTCa < 1:1031199/100‑1 (MQ=255) tGCTGTAAACGCCGGGTAACTGCCAGAACAGACGCCCCACACCCCAGAAACAACCCATCGCaaa > 2:1209390/1‑64 (MQ=255) tGCTGTAAACGCCGGGTAACTGCCAGAACAGACGCCCCACACCCCAGAAACAACCCATCGCaaa < 1:1209390/64‑1 (MQ=255) tGCTGTAAACGCCGGGTAACTGCCAGAACAGACGCCCCACACCCCAGAAACAACCCATCGCAAAAATGGCAATCTCCATTCCGTCAGGTACATTGGTCATTGAGTGACCGTTGACCGCATGCAGCGTGGCTACGGGCAt < 1:729860/139‑1 (MQ=255) aCGCCGGGTAACTGCCAGAACAGACGCCCCACACCCCAGAAACAACCCATCGCAAAAATGGCAATCTCCATTCCGTCAGGTACATTGGTCATTGAGTGACCGTTGACCGCATGCAGCGTGGCTACGGGCATCGGGgtgt < 2:1539905/139‑1 (MQ=255) cGGGTAACTGCCAGAACAGACGCCCCACACCCCAGAAACAACCCATCGCAAAAATGGCAATCTCCATTCCGTc > 1:1580612/1‑73 (MQ=255) cGGGTAACTGCCAGAACAGACGCCCCACACCCCAGAAACAACCCATCGCAAAAATGGCAATCTCCATTCCGTc < 2:1580612/73‑1 (MQ=255) cGGGTAACTGCCAGAACAGACGCCCCACACCCCAGAAACAACCCATCGCAAAAATGGCAATCTCCATTCCGTCAgg < 1:981832/76‑1 (MQ=255) cGGGTAACTGCCAGAACAGACGCCCCACACCCCAGAAACAACCCATCGCAAAAATGGCAATCTCCATTCCGTCAgg > 2:981832/1‑76 (MQ=255) gTAACTGCCAGAACAGACGCCCCACACCCCAGAAACAACCCATCGCAAAAATGGCAATCTCCATTCCGTCAGGTACATTGGTCATTGAGTGACCGTTGACCGCATGCAGCGTGGCTACGGGCATCGGGGTGTTACGTcc > 2:1411536/1‑139 (MQ=255) gCCAGAACAGACGCCCCACACCCCAGAAACAACCCATCGCAAAAATGGCAATCTCCATTcc > 2:1045231/1‑61 (MQ=255) gCCAGAACAGACGCCCCACACCCCAGAAACAACCCATCGCAAAAATGGCAATCTCCATTcc < 1:1045231/61‑1 (MQ=255) aGACGCCCCACACCCCAGAAACAACCCATCGCAAAAATGGCAATCTCCATTCCGTCAGGTACATTGGTCATTGAGTGACCGTTGACCGCATGCAGCGTGGCTACGGGCATCGGGGTGTTACGTCCAGGCAGGGCATcgg < 1:746731/139‑1 (MQ=255) aGACGCCCCACACCCCAGAAACAACCCATCGCAAAAATGGCAATCTCCATTCCGTCAGGTACATTGGTCATTGAGTGACCGTTGACCGCATGCAGCGTGGCTACGGGCATCGGGGTGTTACGTCCAGGCAGGGCATcgg < 2:996770/139‑1 (MQ=255) gACGCCCCACACCCCAGAAACAACCCATCGCAAAAATGGCAAt > 2:376196/1‑43 (MQ=255) gACGCCCCACACCCCAGAAACAACCCATCGCAAAAATGGCAAt < 1:376196/43‑1 (MQ=255) gACGCCCCACACCCCAGAAACAACCCATCGCAAAAATGGCAATCTCCATTCCGTCAGGTACATTGGTCATTGAGTGACCGTTGACCGCATGCAGCGTGGCTACGGGCATCGGGGTGTTACGTCCAGGCAGGGCATcggc > 2:163964/1‑139 (MQ=255) aCGCCCCACACCCCAGAAACAACCCATCGCAAAAATGGCAATCTCCATTCCGTCAGGTACATTGGTCATTGAGTGACCGTTGACCGCATGCAGCGTGGCTACGGGCATCGGGGTGTTACGTCCAGGCAGGGCATcggcg > 1:77201/1‑139 (MQ=255) | TCGTAAACAATGCGTACCGCTTCGGCATGACCCGTATCACCGGAGCACACTTCCCGATAAGTCGGATTTGGCGTATAGCCGCCGGTATAGCCTGCGGCGGTGCTGTAAACGCCGGGTAACTGCCAGAACAGACGCTCCACACCCCAGAAACAACCCATCGCAAAAATGGCAATCTCCATTCCGTCAGGTACATTGGTCATTGAGTGACCGTTGACCGCATGCAGCGTGGCTACGGGCATCGGGGTGTTACGTCCAGGCAGGGCATCGGCG > NC_000913/4441872‑4442141 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |